jgi.p|Nanoce1779_2|576233, mRNA_105 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576233
Unique Name	mRNA_105
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1775
Alignment location	scaffold_3:282881..284843 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576319
Track	FilteredModels2
ProteinId	576233

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:282881..284843 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576233	gene_105	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576233	mRNA_105-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_105	CDS_105	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:282881..284843-
coding sequence from alignment at scaffold_3:282881..284843-

mRNA sequence

>mRNA_105 ID=mRNA_105|Name=jgi.p|Nanoce1779_2|576233|organism=Nannochloropsis oceanica|type=mRNA|length=1775bp
AGGCACACACCACCATCTCCATCACTGCCACTACATCCACAACGCACGCA
TTGCCATGAGCTGGAACGACTCCCGGCAAAGCTTGGGCCCGCGTGCCTCG
ATGGGGCCTCGTCCTAGCATGGGTCCCCGGGCAAGCATCGGCGGCCGGCA
GCAGCAGCAGCCAGTCCAAGCCTTCTCATTTCCCATCCTCAAGACCCCTG
ATATTTTGCAGTGCATGCACGAACTGCAGGTGCGCTTGACGGAGGCGGAG
ATTAATGAGGCAGACAAGCATCGGGACTCCATTCGACGGGCATACGAGCA
TTTGGTGGAGATTTGCACAGGCATCACCAAGGAAGAAATGAGCCAGCCGG
CCTTCAGTGGTATTAACGCCCTCAACTACCCCGAGCTGCACGAGGAATCC
ATCCCCGAACTCGCCTTCTTCCGTGCATGTACCAAAATGATGACTGTGTG
TGGTGTGCATGACTTTAGCATGAAAGACCTCCTTGCCCCGGAGCCGAAGC
GAGTGAGGAGGCACTTGAGCGCTATCATTAACTTTGCCAAGTTCCGAGAG
GAGCGTCTGGTGATGTATTCGGAGCTGGCTGTGAAAAGGGATCAATTACT
CGATACCCTCAAGAGGCTCCAGGACGAGGAGGTGGGGGTGAGCAAGGAAC
TCGGTGCCTTGCGGGAGCAGGCGGCGGAAGAAAACGAGGAGATGGAGGGT
TTGGAAAGGGAGTGCGAGATCGCAGAGGCGGAGCTTGACCAACTGAATAA
ACGGCAAGCAGAAATAAGAGCGCAGGGCGGGGAGTTGAAGAAACAGAGTC
AAGAGCTGAAGGAGAGCATTGGGAAGGTTACTGTAGTGTTGGAGGGAGCG
ATCGAGGAGAGGGAGAGGACGAGGGGCCAGATAGTCCGTAGCCCCGAGAG
GGTGAGGAGGGAGCTGGCCAAGGCGGGGGAGGAGGTGGAGATGGAGAAGA
AGGAGGGATTGATTGCAGAGAGGGATGCGAGGGAGATGCATTTGAGGGTG
CAGGCGGTGCAAAAGGGAGAGAAGGAGGTGGGGAAGGCGATCAAGTCGAT
CGAAGACGTGGAGGTGGAGTTGAACAAGCAGAAGGCGGCGAGCAAGGAGC
TGAAGGACGCGACGAGGAATGTGCAAGGGAACCGACAGAAGGTGGTGGAA
ACGAAACAGGAAATGGAGAACCTGAAGAGGCAGGCGTCCAGGTACGAAGA
GCGGCTGGCGCACTTGCGGAGGTCGGGGAAGGCCAAGGACGAGGCTTTGG
AGGAGGCAGGGAGGGAGGCACAGGCCGAGCTGCTGGCTGTGGAGAAGGTG
CGGAGGGCGCACCAGGGAGCAGTGGAGGAGAGCGAAGGAGAAGTGGCACG
AAAGATGGCGGAGCTGGAGGGGGAGAAGGGGGAGAACAGCTTGAGGGTGA
GTGAGATGGTGGGGGCACTCAAGACGCTGAACGAGACTGTGGCGGAGCAC
CAGCAACGGTTGAGGGATACGTTAGGGGACGCGACGAATACGCCGTTGGC
TGGGGCCAGTGTGGTGACCAATACCCCGATTTTGAGCCGCTTGTCGATGG
CGGCGGCGGCCAGAAAGGGGGGGGAGAGTGGGGGAATGGGGGGAGGGATG
ATGAAGCCAGTGCTCTAGAGTGGGACCGAGGGAGGGACAGGATGTGTGTG
TGTGTGTGTGGGCGCGCGCAGGGATGAAGGACACTGCAAGATAAGGCGGA
AAAAGAGGCTTACGGAGGATGAAACGGATTAACGCACAGTAGCCGGGTGT
AAGTGTGCGTGACTGTAGGAGTGAC

protein sequence of jgi.p|Nanoce1779_2|576233

>mRNA_105-protein ID=mRNA_105-protein|Name=jgi.p|Nanoce1779_2|576233|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MSWNDSRQSLGPRASMGPRPSMGPRASIGGRQQQQPVQAFSFPILKTPDI
LQCMHELQVRLTEAEINEADKHRDSIRRAYEHLVEICTGITKEEMSQPAF
SGINALNYPELHEESIPELAFFRACTKMMTVCGVHDFSMKDLLAPEPKRV
RRHLSAIINFAKFREERLVMYSELAVKRDQLLDTLKRLQDEEVGVSKELG
ALREQAAEENEEMEGLERECEIAEAELDQLNKRQAEIRAQGGELKKQSQE
LKESIGKVTVVLEGAIEERERTRGQIVRSPERVRRELAKAGEEVEMEKKE
GLIAERDAREMHLRVQAVQKGEKEVGKAIKSIEDVEVELNKQKAASKELK
DATRNVQGNRQKVVETKQEMENLKRQASRYEERLAHLRRSGKAKDEALEE
AGREAQAELLAVEKVRRAHQGAVEESEGEVARKMAELEGEKGENSLRVSE
MVGALKTLNETVAEHQQRLRDTLGDATNTPLAGASVVTNTPILSRLSMAA
AARKGGESGGMGGGMMKPVL*

mRNA from alignment at scaffold_3:282881..284843-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_105 ID=mRNA_105|Name=jgi.p|Nanoce1779_2|576233|organism=Nannochloropsis oceanica|type=mRNA|length=1963bp|location=Sequence derived from alignment at scaffold_3:282881..284843- (Nannochloropsis oceanica)
AGGCACACACCACCATCTCCATCACTGCCACTACATCCACAACGCACGCA
TTGCCATGAGCTGGAACGACTCCCGGCAAAGCTTGGGCCCGCGTGCCTCG
ATGGGGCCTCGTCCTAGCATGGGTCCCCGGGCAAGCATCGGCGGCCGGCA
GCAGCAGCAGCCAGTCCAAGCCTTCTCATTTCCCATCCTCAAGACCCCTG
ATATTTTGCAGTGCATGCACGAACTGCAGGTGCGCTTGACGGAGGCGGAG
ATTAATGAGGCAGACAAGCATCGGGACTCCATTCGACGGGCATACGAGCA
TTTGGTGGAGATTTGCACAGGTGCGTAGGATGACGGTGGCGTTCGAAGCT
CTGGGGTGTTTCTCCCTCCCCTGCCGCCTCCCTCCTTCCCGCGTGTCTCC
CTGGTCATCCCCACTGCCTCTCGACCTGCCCTTCTCTATGATCCACAATG
CTACTTTTGACGTATTTCCCCTTCCCCGCCCATCCCTCCCCTCCTACTTG
CGACCAAGGCATCACCAAGGAAGAAATGAGCCAGCCGGCCTTCAGTGGTA
TTAACGCCCTCAACTACCCCGAGCTGCACGAGGAATCCATCCCCGAACTC
GCCTTCTTCCGTGCATGTACCAAAATGATGACTGTGTGTGGTGTGCATGA
CTTTAGCATGAAAGACCTCCTTGCCCCGGAGCCGAAGCGAGTGAGGAGGC
ACTTGAGCGCTATCATTAACTTTGCCAAGTTCCGAGAGGAGCGTCTGGTG
ATGTATTCGGAGCTGGCTGTGAAAAGGGATCAATTACTCGATACCCTCAA
GAGGCTCCAGGACGAGGAGGTGGGGGTGAGCAAGGAACTCGGTGCCTTGC
GGGAGCAGGCGGCGGAAGAAAACGAGGAGATGGAGGGTTTGGAAAGGGAG
TGCGAGATCGCAGAGGCGGAGCTTGACCAACTGAATAAACGGCAAGCAGA
AATAAGAGCGCAGGGCGGGGAGTTGAAGAAACAGAGTCAAGAGCTGAAGG
AGAGCATTGGGAAGGTTACTGTAGTGTTGGAGGGAGCGATCGAGGAGAGG
GAGAGGACGAGGGGCCAGATAGTCCGTAGCCCCGAGAGGGTGAGGAGGGA
GCTGGCCAAGGCGGGGGAGGAGGTGGAGATGGAGAAGAAGGAGGGATTGA
TTGCAGAGAGGGATGCGAGGGAGATGCATTTGAGGGTGCAGGCGGTGCAA
AAGGGAGAGAAGGAGGTGGGGAAGGCGATCAAGTCGATCGAAGACGTGGA
GGTGGAGTTGAACAAGCAGAAGGCGGCGAGCAAGGAGCTGAAGGACGCGA
CGAGGAATGTGCAAGGGAACCGACAGAAGGTGGTGGAAACGAAACAGGAA
ATGGAGAACCTGAAGAGGCAGGCGTCCAGGTACGAAGAGCGGCTGGCGCA
CTTGCGGAGGTCGGGGAAGGCCAAGGACGAGGCTTTGGAGGAGGCAGGGA
GGGAGGCACAGGCCGAGCTGCTGGCTGTGGAGAAGGTGCGGAGGGCGCAC
CAGGGAGCAGTGGAGGAGAGCGAAGGAGAAGTGGCACGAAAGATGGCGGA
GCTGGAGGGGGAGAAGGGGGAGAACAGCTTGAGGGTGAGTGAGATGGTGG
GGGCACTCAAGACGCTGAACGAGACTGTGGCGGAGCACCAGCAACGGTTG
AGGGATACGTTAGGGGACGCGACGAATACGCCGTTGGCTGGGGCCAGTGT
GGTGACCAATACCCCGATTTTGAGCCGCTTGTCGATGGCGGCGGCGGCCA
GAAAGGGGGGGGAGAGTGGGGGAATGGGGGGAGGGATGATGAAGCCAGTG
CTCTAGAGTGGGACCGAGGGAGGGACAGGATGTGTGTGTGTGTGTGTGGG
CGCGCGCAGGGATGAAGGACACTGCAAGATAAGGCGGAAAAAGAGGCTTA
CGGAGGATGAAACGGATTAACGCACAGTAGCCGGGTGTAAGTGTGCGTGA
CTGTAGGAGTGAC

Coding sequence (CDS) from alignment at scaffold_3:282881..284843-

>mRNA_105 ID=mRNA_105|Name=jgi.p|Nanoce1779_2|576233|organism=Nannochloropsis oceanica|type=CDS|length=3126bp|location=Sequence derived from alignment at scaffold_3:282881..284843- (Nannochloropsis oceanica)
GCATCACCAAGGAAGAAATGAGCCAGCCGGCCTTCAGTGGTATTAACGCC
CTCAACTACCCCGAGCTGCACGAGGAATCCATCCCCGAACTCGCCTTCTT
CCGTGCATGTACCAAAATGATGACTGTGTGTGGTGTGCATGACTTTAGCA
TGAAAGACCTCCTTGCCCCGGAGCCGAAGCGAGTGAGGAGGCACTTGAGC
GCTATCATTAACTTTGCCAAGTTCCGAGAGGAGCGTCTGGTGATGTATTC
GGAGCTGGCTGTGAAAAGGGATCAATTACTCGATACCCTCAAGAGGCTCC
AGGACGAGGAGGTGGGGGTGAGCAAGGAACTCGGTGCCTTGCGGGAGCAG
GCGGCGGAAGAAAACGAGGAGATGGAGGGTTTGGAAAGGGAGTGCGAGAT
CGCAGAGGCGGAGCTTGACCAACTGAATAAACGGCAAGCAGAAATAAGAG
CGCAGGGCGGGGAGTTGAAGAAACAGAGTCAAGAGCTGAAGGAGAGCATT
GGGAAGGTTACTGTAGTGTTGGAGGGAGCGATCGAGGAGAGGGAGAGGAC
GAGGGGCCAGATAGTCCGTAGCCCCGAGAGGGTGAGGAGGGAGCTGGCCA
AGGCGGGGGAGGAGGTGGAGATGGAGAAGAAGGAGGGATTGATTGCAGAG
AGGGATGCGAGGGAGATGCATTTGAGGGTGCAGGCGGTGCAAAAGGGAGA
GAAGGAGGTGGGGAAGGCGATCAAGTCGATCGAAGACGTGGAGGTGGAGT
TGAACAAGCAGAAGGCGGCGAGCAAGGAGCTGAAGGACGCGACGAGGAAT
GTGCAAGGGAACCGACAGAAGGTGGTGGAAACGAAACAGGAAATGGAGAA
CCTGAAGAGGCAGGCGTCCAGGTACGAAGAGCGGCTGGCGCACTTGCGGA
GGTCGGGGAAGGCCAAGGACGAGGCTTTGGAGGAGGCAGGGAGGGAGGCA
CAGGCCGAGCTGCTGGCTGTGGAGAAGGTGCGGAGGGCGCACCAGGGAGC
AGTGGAGGAGAGCGAAGGAGAAGTGGCACGAAAGATGGCGGAGCTGGAGG
GGGAGAAGGGGGAGAACAGCTTGAGGGTGAGTGAGATGGTGGGGGCACTC
AAGACGCTGAACGAGACTGTGGCGGAGCACCAGCAACGGTTGAGGGATAC
GTTAGGGGACGCGACGAATACGCCGTTGGCTGGGGCCAGTGTGGTGACCA
ATACCCCGATTTTGAGCCGCTTGTCGATGGCGGCGGCGGCCAGAAAGGGG
GGGGAGAGTGGGGGAATGGGGGGAGGGATGATGAAGCCAGTGCTCTAGAT
GAGCTGGAACGACTCCCGGCAAAGCTTGGGCCCGCGTGCCTCGATGGGGC
CTCGTCCTAGCATGGGTCCCCGGGCAAGCATCGGCGGCCGGCAGCAGCAG
CAGCCAGTCCAAGCCTTCTCATTTCCCATCCTCAAGACCCCTGATATTTT
GCAGTGCATGCACGAACTGCAGGTGCGCTTGACGGAGGCGGAGATTAATG
AGGCAGACAAGCATCGGGACTCCATTCGACGGGCATACGAGCATTTGGTG
GAGATTTGCACAGGCATCACCAAGGAAGAAATGAGCCAGCCGGCCTTCAG
TGGTATTAACGCCCTCAACTACCCCGAGCTGCACGAGGAATCCATCCCCG
AACTCGCCTTCTTCCGTGCATGTACCAAAATGATGACTGTGTGTGGTGTG
CATGACTTTAGCATGAAAGACCTCCTTGCCCCGGAGCCGAAGCGAGTGAG
GAGGCACTTGAGCGCTATCATTAACTTTGCCAAGTTCCGAGAGGAGCGTC
TGGTGATGTATTCGGAGCTGGCTGTGAAAAGGGATCAATTACTCGATACC
CTCAAGAGGCTCCAGGACGAGGAGGTGGGGGTGAGCAAGGAACTCGGTGC
CTTGCGGGAGCAGGCGGCGGAAGAAAACGAGGAGATGGAGGGTTTGGAAA
GGGAGTGCGAGATCGCAGAGGCGGAGCTTGACCAACTGAATAAACGGCAA
GCAGAAATAAGAGCGCAGGGCGGGGAGTTGAAGAAACAGAGTCAAGAGCT
GAAGGAGAGCATTGGGAAGGTTACTGTAGTGTTGGAGGGAGCGATCGAGG
AGAGGGAGAGGACGAGGGGCCAGATAGTCCGTAGCCCCGAGAGGGTGAGG
AGGGAGCTGGCCAAGGCGGGGGAGGAGGTGGAGATGGAGAAGAAGGAGGG
ATTGATTGCAGAGAGGGATGCGAGGGAGATGCATTTGAGGGTGCAGGCGG
TGCAAAAGGGAGAGAAGGAGGTGGGGAAGGCGATCAAGTCGATCGAAGAC
GTGGAGGTGGAGTTGAACAAGCAGAAGGCGGCGAGCAAGGAGCTGAAGGA
CGCGACGAGGAATGTGCAAGGGAACCGACAGAAGGTGGTGGAAACGAAAC
AGGAAATGGAGAACCTGAAGAGGCAGGCGTCCAGGTACGAAGAGCGGCTG
GCGCACTTGCGGAGGTCGGGGAAGGCCAAGGACGAGGCTTTGGAGGAGGC
AGGGAGGGAGGCACAGGCCGAGCTGCTGGCTGTGGAGAAGGTGCGGAGGG
CGCACCAGGGAGCAGTGGAGGAGAGCGAAGGAGAAGTGGCACGAAAGATG
GCGGAGCTGGAGGGGGAGAAGGGGGAGAACAGCTTGAGGGTGAGTGAGAT
GGTGGGGGCACTCAAGACGCTGAACGAGACTGTGGCGGAGCACCAGCAAC
GGTTGAGGGATACGTTAGGGGACGCGACGAATACGCCGTTGGCTGGGGCC
AGTGTGGTGACCAATACCCCGATTTTGAGCCGCTTGTCGATGGCGGCGGC
GGCCAGAAAGGGGGGGGAGAGTGGGGGAATGGGGGGAGGGATGATGAAGC
CAGTGCTCTAGATGAGCTGGAACGACTCCCGGCAAAGCTTGGGCCCGCGT
GCCTCGATGGGGCCTCGTCCTAGCATGGGTCCCCGGGCAAGCATCGGCGG
CCGGCAGCAGCAGCAGCCAGTCCAAGCCTTCTCATTTCCCATCCTCAAGA
CCCCTGATATTTTGCAGTGCATGCACGAACTGCAGGTGCGCTTGACGGAG
GCGGAGATTAATGAGGCAGACAAGCATCGGGACTCCATTCGACGGGCATA
CGAGCATTTGGTGGAGATTTGCACAG

Synonyms

Publications