jgi.p|Nanoce1779_2|344990, mRNA_10499 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|344990
Unique NamemRNA_10499
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length569
Alignment locationscaffold_52:101070..101845 +

Link to JBrowse

Properties
Property NameValue
TranscriptId345076
TrackFilteredModels2
ProteinId344990
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:101070..101845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|344990gene_10499Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|344990mRNA_10499-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10499CDS_10499Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10499 ID=mRNA_10499|Name=jgi.p|Nanoce1779_2|344990|organism=Nannochloropsis oceanica|type=mRNA|length=569bp
CCCTCACTCTTCCTCGCCCTTGACTGCACCCTCCCTCCCGATCATCCGGA
TCCCTCTTCTTGATCTTCATTACTAAGTTCTCTACCCTCTCGGAATCATC
GGCATGCTTATCATAATATGGAATGTCATTACACTCGCTGCATTCCCTCC
ACGTCTTGGACATGTCTTTTCCATCCCGACAGCAGTTCTCTACCCTCTCG
GAATCATCGGCATGCTTATCATAATATGGAATGTCATTACACTCGCTGCA
TTCCCTCCACGTCTTGGACATGTCTTTTCCATCCCGACAGCAGGAAACTT
TCCCTCACTCTTCCTCGCCCTTGACTGCACCCTCCCTCCCGCTACGCGCT
GCTTTGGCAGCTCCACGATTTTAACAAGCCGGAAACGACCACGACATATT
CAATTCTTCGGCTTGATGTCCGAATACACTTTGTGCTGGCCTTCGTCCGC
GCACATCAGCACCGAGGTGTAAATTGCTGTCGCTTCGCTTTTTTTTCGCC
TCTCCAGAGCTTAGGGAGGTCCACCGACACTCTGTCTTGATGTCCATGTG
GGTAAAGTCTTGTCTTATC
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protein sequence of jgi.p|Nanoce1779_2|344990

>mRNA_10499-protein ID=mRNA_10499-protein|Name=jgi.p|Nanoce1779_2|344990|organism=Nannochloropsis oceanica|type=polypeptide|length=123bp
MLIIIWNVITLAAFPPRLGHVFSIPTAVLYPLGIIGMLIIIWNVITLAAF
PPRLGHVFSIPTAGNFPSLFLALDCTLPPATRCFGSSTILTSRKRPRHIQ
FFGLMSEYTLCWPSSAHISTEV*
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mRNA from alignment at scaffold_52:101070..101845+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10499 ID=mRNA_10499|Name=jgi.p|Nanoce1779_2|344990|organism=Nannochloropsis oceanica|type=mRNA|length=776bp|location=Sequence derived from alignment at scaffold_52:101070..101845+ (Nannochloropsis oceanica)
CCCTCACTCTTCCTCGCCCTTGACTGCACCCTCCCTCCCGATCATCCGGA
TCCCTCTTCTTGATCTTCATTACTAAGTTCTCTACCCTCTCGGAATCATC
GGCATGCTTATCATAATATGGAATGTCATTACACTCGCTGCATTCCCTCC
ACGTCTTGGACATGTCTTTTCCATCCCGACAGCAGGTAGATGCTGATTTA
AAGAGCCATTCTTTTTCTTTCTTGACCTCTTGCACATAGTACACAGGAAA
CTTTCCCTCACTCTTCCTCGCCCTTGACTGCACCCTCCCTCCCGATCATC
CGGATCCCTCTTCTTGATCTTCATTACTAAGTTCTCTACCCTCTCGGAAT
CATCGGCATGCTTATCATAATATGGAATGTCATTACACTCGCTGCATTCC
CTCCACGTCTTGGACATGTCTTTTCCATCCCGACAGCAGGTAGATGCTGA
TTTAAAGAGCCATTCTTTTTCTTTCTTGACCTCTTGCACATAGTACACAG
GAAACTTTCCCTCACTCTTCCTCGCCCTTGACTGCACCCTCCCTCCCGCT
ACGCGCTGCTTTGGCAGCTCCACGATTTTAACAAGCCGGAAACGACCACG
ACATATTCAATTCTTCGGCTTGATGTCCGAATACACTTTGTGCTGGCCTT
CGTCCGCGCACATCAGCACCGAGGTGTAAATTGCTGTCGCTTCGCTTTTT
TTTCGCCTCTCCAGAGCTTAGGGAGGTCCACCGACACTCTGTCTTGATGT
CCATGTGGGTAAAGTCTTGTCTTATC
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Coding sequence (CDS) from alignment at scaffold_52:101070..101845+

>mRNA_10499 ID=mRNA_10499|Name=jgi.p|Nanoce1779_2|344990|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_52:101070..101845+ (Nannochloropsis oceanica)
ATGCTTATCATAATATGGAATGTCATTACACTCGCTGCATTCCCTCCACG
TCTTGGACATGTCTTTTCCATCCCGACAGCAGTTCTCTACCCTCTCGGAA
TCATCGGCATGCTTATCATAATATGGAATGTCATTACACTCGCTGCATTC
CCTCCACGTCTTGGACATGTCTTTTCCATCCCGACAGCAGGAAACTTTCC
CTCACTCTTCCTCGCCCTTGACTGCACCCTCCCTCCCGCTACGCGCTGCT
TTGGCAGCTCCACGATTTTAACAAGCCGGAAACGACCACGACATATTCAA
TTCTTCGGCTTGATGTCCGAATACACTTTGTGCTGGCCTTCGTCCGCGCA
CATCAGCACCGAGGTGTAAATGCTTATCATAATATGGAATGTCATTACAC
TCGCTGCATTCCCTCCACGTCTTGGACATGTCTTTTCCATCCCGACAGCA
GTTCTCTACCCTCTCGGAATCATCGGCATGCTTATCATAATATGGAATGT
CATTACACTCGCTGCATTCCCTCCACGTCTTGGACATGTCTTTTCCATCC
CGACAGCAGGAAACTTTCCCTCACTCTTCCTCGCCCTTGACTGCACCCTC
CCTCCCGCTACGCGCTGCTTTGGCAGCTCCACGATTTTAACAAGCCGGAA
ACGACCACGACATATTCAATTCTTCGGCTTGATGTCCGAATACACTTTGT
GCTGGCCTTCGTCCGCGCACATCAGCACCGAGGTGTAAATGCTTATCATA
ATATGGAATGTCATTACACTCGCTGCATTCCCTCCACGTCTTGGACATGT
CTTTTCCATCCCGACAGCAGTTCTCTACCCTCTCGGAATCATCGGCATGC
TTATCATAATATGGAATGTCATTACACTCGCTGCATTCCCTCCACGTCTT
GGACATGTCTTTTCCATCCCGACAGCAGGAAACTTTCCCTCACTCTTCCT
CGCCCTTGACTGCACCCTCCCTCCCGCTACGCGCTGCTTTGGCAGCTCCA
CGATTTTAACAAGCCGGAAACGACCACGACATATTCAATTCTTCGGCTTG
ATGTCCGAATACACTTTGTGCTGGCCTTCGTCCGCGCACATCAGCACCGA
GGTGTAA
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Synonyms
Publications