jgi.p|Nanoce1779_2|610753, mRNA_10496 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610753
Unique NamemRNA_10496
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length507
Alignment locationscaffold_52:84273..84854 -

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Properties
Property NameValue
TranscriptId610839
TrackFilteredModels2
ProteinId610753
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:84273..84854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610753gene_10496Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610753mRNA_10496-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10496CDS_10496Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10496 ID=mRNA_10496|Name=jgi.p|Nanoce1779_2|610753|organism=Nannochloropsis oceanica|type=mRNA|length=507bp
CGCAGAGAAGAGCTGCTTGGTCTGGTCGGGGTTGATGAAGGCGGAAGTAT
AAGTCTTCTAATACTGCTGGGTGAACGTTTGAGCTGTGTAACTTCCCTTG
AAGAAGCTCTTCTCCATCGCATCCGCCATGGCGCTAATCGTCATCTTCTC
GTCGTGGGGCCATTAGCGCCTTTATTCTCGACAGGAAACGACATTCTGAA
AATTACGTGGGGCTCTTCCACCCTTTGGGCTTTCGGCCTCCTGCACTTGA
CCTACCCGTTCTCGCGGTTGAGCCTGAATGTGCACTGCTTGCATCCCTCG
TGGCGGAAATTCCCCTGGAAGATGCCCGTGAGCCTGCATTCTCCCATCAC
ATTGAAGGGCTCGGTCGGGTCGGAGACAAGGGAGTTCTTGCGCACTCCTC
TCTTCCGTTGTTCAATGCTCTTAGTGACATCTTGGTGGCATCTTTCCGGT
CGTTGGGTAGTGATCGATATGGTGAGTAACACATGCGTTCTGATGTTCAG
GCGGTAG
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protein sequence of jgi.p|Nanoce1779_2|610753

>mRNA_10496-protein ID=mRNA_10496-protein|Name=jgi.p|Nanoce1779_2|610753|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
RREELLGLVGVDEGGSISLLILLGERLSCVTSLEEALLHRIRHGANRHLL
VVGPLAPLFSTGNDILKITWGSSTLWAFGLLHLTYPFSRLSLNVHCLHPS
WRKFPWKMPVSLHSPITLKGSVGSETREFLRTPLFRCSMLLVTSWWHLSG
RWVVIDMVSNTCVLMFRR*
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mRNA from alignment at scaffold_52:84273..84854-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10496 ID=mRNA_10496|Name=jgi.p|Nanoce1779_2|610753|organism=Nannochloropsis oceanica|type=mRNA|length=582bp|location=Sequence derived from alignment at scaffold_52:84273..84854- (Nannochloropsis oceanica)
CGCAGAGAAGAGCTGCTTGGTCTGGTCGGGGTTGATGAAGGCGGAAGTAT
AAGTCTTCTAATACTGCTGGGTGAACGTTTGAGCTGTGTAACTTCCCTTG
AAGAAGCTCTTCTCCATCGCATCCGCCATGGCGCTAATCGTCATCTTCTC
GTCGTGGGGCCATTAGCGCCTTTATTCTCGACAGGAAACGACATTCTGAA
AATTACGTGGGGCTCTTCCACCCTTTGGGCTTTCGGCCTCCTGCACTTGA
CCTACCCGTTCTCGCGGTTGAGCCTGAATGTGCACTGCTTGCATCCCTCG
TGGCGGAAATTCCCCTGGAAGATGCCCGTGAGCCTGCATTCTCCCATCAC
ATTGAAGGGCTCGGTCGGGTCGGAGACAAGGGAGTTCTTGCGCACTCCTC
TCTTCCGTTGTTCAATGCTCTTAGTGACATCTTGGTGGCATCTTTCCGGT
CGTTGGGTAGTGATCGATATGGTGAGTAAGTGCGTTGTGTACTTTATGCA
AAGGGATGGTGAGAGGAGCCTCGGGGTCGGACTGCCTTCTTCGCTCAAAA
GCAGCACATGCGTTCTGATGTTCAGGCGGTAG
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Coding sequence (CDS) from alignment at scaffold_52:84273..84854-

>mRNA_10496 ID=mRNA_10496|Name=jgi.p|Nanoce1779_2|610753|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_52:84273..84854- (Nannochloropsis oceanica)
CACATGCGTTCTGATGTTCAGGCGGTAGCGCAGAGAAGAGCTGCTTGGTC
TGGTCGGGGTTGATGAAGGCGGAAGTATAAGTCTTCTAATACTGCTGGGT
GAACGTTTGAGCTGTGTAACTTCCCTTGAAGAAGCTCTTCTCCATCGCAT
CCGCCATGGCGCTAATCGTCATCTTCTCGTCGTGGGGCCATTAGCGCCTT
TATTCTCGACAGGAAACGACATTCTGAAAATTACGTGGGGCTCTTCCACC
CTTTGGGCTTTCGGCCTCCTGCACTTGACCTACCCGTTCTCGCGGTTGAG
CCTGAATGTGCACTGCTTGCATCCCTCGTGGCGGAAATTCCCCTGGAAGA
TGCCCGTGAGCCTGCATTCTCCCATCACATTGAAGGGCTCGGTCGGGTCG
GAGACAAGGGAGTTCTTGCGCACTCCTCTCTTCCGTTGTTCAATGCTCTT
AGTGACATCTTGGTGGCATCTTTCCGGTCGTTGGGTAGTGATCGATATGG
TGAGTAACACATGCGTTCTGATGTTCAGGCGGTAGCGCAGAGAAGAGCTG
CTTGGTCTGGTCGGGGTTGATGAAGGCGGAAGTATAAGTCTTCTAATACT
GCTGGGTGAACGTTTGAGCTGTGTAACTTCCCTTGAAGAAGCTCTTCTCC
ATCGCATCCGCCATGGCGCTAATCGTCATCTTCTCGTCGTGGGGCCATTA
GCGCCTTTATTCTCGACAGGAAACGACATTCTGAAAATTACGTGGGGCTC
TTCCACCCTTTGGGCTTTCGGCCTCCTGCACTTGACCTACCCGTTCTCGC
GGTTGAGCCTGAATGTGCACTGCTTGCATCCCTCGTGGCGGAAATTCCCC
TGGAAGATGCCCGTGAGCCTGCATTCTCCCATCACATTGAAGGGCTCGGT
CGGGTCGGAGACAAGGGAGTTCTTGCGCACTCCTCTCTTCCGTTGTTCAA
TGCTCTTAGTGACATCTTGGTGGCATCTTTCCGGTCGTTGGGTAGTGATC
GATATGGTGAGTAA
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Synonyms
Publications