jgi.p|Nanoce1779_2|610751, mRNA_10494 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610751
Unique Name	mRNA_10494
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	745
Alignment location	scaffold_52:82591..83335 +

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Properties


Property Name	Value
TranscriptId	610837
Track	FilteredModels2
ProteinId	610751

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_52	supercontig	scaffold_52:82591..83335 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610751	gene_10494	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610751	mRNA_10494-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10494	CDS_10494	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_52:82591..83335+
coding sequence from alignment at scaffold_52:82591..83335+

mRNA sequence

>mRNA_10494 ID=mRNA_10494|Name=jgi.p|Nanoce1779_2|610751|organism=Nannochloropsis oceanica|type=mRNA|length=745bp
ACAGTTAAACAGATGGTGAAAAAGCTTACCCAGACGTTCAAAACCTTGGT
AGACCTTCCCAACAATGTGAGGCATCAATATGGCTGATGGAGCATGCGCG
GCCTTGAAGTCTTCGTCCTTCCCTCGACCTCCTCCTCCACCTGCATTACC
CATTCCGACCTTAGAGGCGGCCTTGAGCAAGCAGCAAGCCATCATAAGTG
TGTTCATGGCGACGATGTCGGTATCTCCTGGCCTTTCCACAACTTGTCCG
GCTCCTCTTCCTGCTCCTCTTCCTTTCTCCTCCTCTGCCAAAGGTTTGAT
GACTGATGTTGAGAAGGAGAGCATACGTCGTCCCTTCATGGTTGGCCGGA
ATACTACTGAGGGCATGTGCCCGTTGCAGGACGCGGCGAGTGATGCCTAC
TATAGTTTTTCTTCGGATGATGATGATCTTCAAGGCGATGGCTACGACGA
CGATGGTGACCCCATGGTACAGGAGCTGAAGGAAAATAGGATACAGCAGC
GGGACCAGCGAGACCCCGAGAAGTCCTTGACAACTCGTATAACTATTGAC
AAGGACAAAACAGGGGAAGGACTTAGTGGGATACTGGTCGAGGCCAACAA
GAAATGCACCGACTTCCACCATCTCCTCAAAGAAATAGAGCAGGACCGTA
AAGAGATTGACGGGCTTACCATTCAAATAAAAGACTTACTCCAAATTATG
AGAACGATATAAGAGCCGAGAGTAAAAGGGGTACTTGAGTGAGTG

protein sequence of jgi.p|Nanoce1779_2|610751

>mRNA_10494-protein ID=mRNA_10494-protein|Name=jgi.p|Nanoce1779_2|610751|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MADGACAALKSSSFPRPPPPPALPIPTLEAALSKQQAIISVFMATMSVSP
GLSTTCPAPLPAPLPFSSSAKGLMTDVEKESIRRPFMVGRNTTEGMCPLQ
DAASDAYYSFSSDDDDLQGDGYDDDGDPMVQELKENRIQQRDQRDPEKSL
TTRITIDKDKTGEGLSGILVEANKKCTDFHHLLKEIEQDRKEIDGLTIQI
KDLLQIMRTI*

mRNA from alignment at scaffold_52:82591..83335+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10494 ID=mRNA_10494|Name=jgi.p|Nanoce1779_2|610751|organism=Nannochloropsis oceanica|type=mRNA|length=745bp|location=Sequence derived from alignment at scaffold_52:82591..83335+ (Nannochloropsis oceanica)
ACAGTTAAACAGATGGTGAAAAAGCTTACCCAGACGTTCAAAACCTTGGT
AGACCTTCCCAACAATGTGAGGCATCAATATGGCTGATGGAGCATGCGCG
GCCTTGAAGTCTTCGTCCTTCCCTCGACCTCCTCCTCCACCTGCATTACC
CATTCCGACCTTAGAGGCGGCCTTGAGCAAGCAGCAAGCCATCATAAGTG
TGTTCATGGCGACGATGTCGGTATCTCCTGGCCTTTCCACAACTTGTCCG
GCTCCTCTTCCTGCTCCTCTTCCTTTCTCCTCCTCTGCCAAAGGTTTGAT
GACTGATGTTGAGAAGGAGAGCATACGTCGTCCCTTCATGGTTGGCCGGA
ATACTACTGAGGGCATGTGCCCGTTGCAGGACGCGGCGAGTGATGCCTAC
TATAGTTTTTCTTCGGATGATGATGATCTTCAAGGCGATGGCTACGACGA
CGATGGTGACCCCATGGTACAGGAGCTGAAGGAAAATAGGATACAGCAGC
GGGACCAGCGAGACCCCGAGAAGTCCTTGACAACTCGTATAACTATTGAC
AAGGACAAAACAGGGGAAGGACTTAGTGGGATACTGGTCGAGGCCAACAA
GAAATGCACCGACTTCCACCATCTCCTCAAAGAAATAGAGCAGGACCGTA
AAGAGATTGACGGGCTTACCATTCAAATAAAAGACTTACTCCAAATTATG
AGAACGATATAAGAGCCGAGAGTAAAAGGGGTACTTGAGTGAGTG

Coding sequence (CDS) from alignment at scaffold_52:82591..83335+

>mRNA_10494 ID=mRNA_10494|Name=jgi.p|Nanoce1779_2|610751|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at scaffold_52:82591..83335+ (Nannochloropsis oceanica)
ATGGCTGATGGAGCATGCGCGGCCTTGAAGTCTTCGTCCTTCCCTCGACC
TCCTCCTCCACCTGCATTACCCATTCCGACCTTAGAGGCGGCCTTGAGCA
AGCAGCAAGCCATCATAAGTGTGTTCATGGCGACGATGTCGGTATCTCCT
GGCCTTTCCACAACTTGTCCGGCTCCTCTTCCTGCTCCTCTTCCTTTCTC
CTCCTCTGCCAAAGGTTTGATGACTGATGTTGAGAAGGAGAGCATACGTC
GTCCCTTCATGGTTGGCCGGAATACTACTGAGGGCATGTGCCCGTTGCAG
GACGCGGCGAGTGATGCCTACTATAGTTTTTCTTCGGATGATGATGATCT
TCAAGGCGATGGCTACGACGACGATGGTGACCCCATGGTACAGGAGCTGA
AGGAAAATAGGATACAGCAGCGGGACCAGCGAGACCCCGAGAAGTCCTTG
ACAACTCGTATAACTATTGACAAGGACAAAACAGGGGAAGGACTTAGTGG
GATACTGGTCGAGGCCAACAAGAAATGCACCGACTTCCACCATCTCCTCA
AAGAAATAGAGCAGGACCGTAAAGAGATTGACGGGCTTACCATTCAAATA
AAAGACTTACTCCAAATTATGAGAACGATATAA

Synonyms

Publications