jgi.p|Nanoce1779_2|610750, mRNA_10493 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610750
Unique NamemRNA_10493
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1011
Alignment locationscaffold_52:80516..81526 -

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Properties
Property NameValue
TranscriptId610836
TrackFilteredModels2
ProteinId610750
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:80516..81526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610750gene_10493Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610750mRNA_10493-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10493CDS_10493Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10493 ID=mRNA_10493|Name=jgi.p|Nanoce1779_2|610750|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp
CAGCACCGCAGTTCTCGTTCGCTTGGGGATCTCCGCACCGACCATGCATT
CGTTCGTCACTTCCCGCGTGACCCGGCTGCTGGCCACCGTGGTCGCCCTA
TGTTTCATGGTGACCTGTGGGCATATAATAGTGGAAGACAATTTTGTCGA
CGACACCGCGCGCAAGAGCCTCCTTGCCCAGCTTCCGGCTCAAGTCCGGT
TTAGGCACACACTGGAGCTGCCCGGTCAGCTCTATGAGCGGCTTGTCACT
GTCCTTAACCCCATCGACGCGGCCAGGACAACTGCTCCGACGTTCGTCCC
GGCCAGTGGAAAATGGGATGCCGTGGCTGCTCATAAAGATAGCTTTGGCG
ACAAGTCTTTGGTCGGAGGGCAGGTGGGCTTGGTCTACCTGGAAGGGGAT
GGGCACATACTCTTCCAGCATGAGGTGACGGGAAAGAAGACGGTGGTGGA
CGTGAAGCCTGGACGATTTTTGTCGTGGGACAATGAGATCTATACGCATA
CATTGATTCCTGGTAACATGCCCCGCCGCCTTTTGGGCCCCATGGCCTTT
CGCGGTGGAGGAATGCAGTGCATTGGTACCGCCCCCCCTGAAAGTCAGAC
GAAACGGGTGTATTATATGATTGTGAAGAAAGATGATCTCACGAAAACTT
TCCTTTTTGATAGTTTAGTGCCGCAGCTCGAGGATTGGTGCCACAAAATC
ACTCTCCATGTTACGATTGGAATTGTGAGTGCAAACTGCACAACAGCGTT
AATTGAATCCAGCAGTAAAAGCAAAGATTCAAACGCCATTGACATCCTTA
ATGGGCTGCCAGAAGTAGTCACCCTTATATCTGGTCTGCCAGATCCAACA
ATGTCAGAAGCTGTTGTATGAAATTTTAATTCTAGCGTGTGAAAGGCGAT
TCAAGATTTACGTCCAGTCGCCACTTCTCATTCGAGAACGAGGGCTACTC
CGCTGCCCATCCTTTCTCGCCAATTTGCTCTGTATGGGCTGCTTTAGAGC
CATTTCTCCCT
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protein sequence of jgi.p|Nanoce1779_2|610750

>mRNA_10493-protein ID=mRNA_10493-protein|Name=jgi.p|Nanoce1779_2|610750|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MHSFVTSRVTRLLATVVALCFMVTCGHIIVEDNFVDDTARKSLLAQLPAQ
VRFRHTLELPGQLYERLVTVLNPIDAARTTAPTFVPASGKWDAVAAHKDS
FGDKSLVGGQVGLVYLEGDGHILFQHEVTGKKTVVDVKPGRFLSWDNEIY
THTLIPGNMPRRLLGPMAFRGGGMQCIGTAPPESQTKRVYYMIVKKDDLT
KTFLFDSLVPQLEDWCHKITLHVTIGIVSANCTTALIESSSKSKDSNAID
ILNGLPEVVTLISGLPDPTMSEAVV*
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mRNA from alignment at scaffold_52:80516..81526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10493 ID=mRNA_10493|Name=jgi.p|Nanoce1779_2|610750|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp|location=Sequence derived from alignment at scaffold_52:80516..81526- (Nannochloropsis oceanica)
CAGCACCGCAGTTCTCGTTCGCTTGGGGATCTCCGCACCGACCATGCATT
CGTTCGTCACTTCCCGCGTGACCCGGCTGCTGGCCACCGTGGTCGCCCTA
TGTTTCATGGTGACCTGTGGGCATATAATAGTGGAAGACAATTTTGTCGA
CGACACCGCGCGCAAGAGCCTCCTTGCCCAGCTTCCGGCTCAAGTCCGGT
TTAGGCACACACTGGAGCTGCCCGGTCAGCTCTATGAGCGGCTTGTCACT
GTCCTTAACCCCATCGACGCGGCCAGGACAACTGCTCCGACGTTCGTCCC
GGCCAGTGGAAAATGGGATGCCGTGGCTGCTCATAAAGATAGCTTTGGCG
ACAAGTCTTTGGTCGGAGGGCAGGTGGGCTTGGTCTACCTGGAAGGGGAT
GGGCACATACTCTTCCAGCATGAGGTGACGGGAAAGAAGACGGTGGTGGA
CGTGAAGCCTGGACGATTTTTGTCGTGGGACAATGAGATCTATACGCATA
CATTGATTCCTGGTAACATGCCCCGCCGCCTTTTGGGCCCCATGGCCTTT
CGCGGTGGAGGAATGCAGTGCATTGGTACCGCCCCCCCTGAAAGTCAGAC
GAAACGGGTGTATTATATGATTGTGAAGAAAGATGATCTCACGAAAACTT
TCCTTTTTGATAGTTTAGTGCCGCAGCTCGAGGATTGGTGCCACAAAATC
ACTCTCCATGTTACGATTGGAATTGTGAGTGCAAACTGCACAACAGCGTT
AATTGAATCCAGCAGTAAAAGCAAAGATTCAAACGCCATTGACATCCTTA
ATGGGCTGCCAGAAGTAGTCACCCTTATATCTGGTCTGCCAGATCCAACA
ATGTCAGAAGCTGTTGTATGAAATTTTAATTCTAGCGTGTGAAAGGCGAT
TCAAGATTTACGTCCAGTCGCCACTTCTCATTCGAGAACGAGGGCTACTC
CGCTGCCCATCCTTTCTCGCCAATTTGCTCTGTATGGGCTGCTTTAGAGC
CATTTCTCCCT
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Coding sequence (CDS) from alignment at scaffold_52:80516..81526-

>mRNA_10493 ID=mRNA_10493|Name=jgi.p|Nanoce1779_2|610750|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_52:80516..81526- (Nannochloropsis oceanica)
ATGCATTCGTTCGTCACTTCCCGCGTGACCCGGCTGCTGGCCACCGTGGT
CGCCCTATGTTTCATGGTGACCTGTGGGCATATAATAGTGGAAGACAATT
TTGTCGACGACACCGCGCGCAAGAGCCTCCTTGCCCAGCTTCCGGCTCAA
GTCCGGTTTAGGCACACACTGGAGCTGCCCGGTCAGCTCTATGAGCGGCT
TGTCACTGTCCTTAACCCCATCGACGCGGCCAGGACAACTGCTCCGACGT
TCGTCCCGGCCAGTGGAAAATGGGATGCCGTGGCTGCTCATAAAGATAGC
TTTGGCGACAAGTCTTTGGTCGGAGGGCAGGTGGGCTTGGTCTACCTGGA
AGGGGATGGGCACATACTCTTCCAGCATGAGGTGACGGGAAAGAAGACGG
TGGTGGACGTGAAGCCTGGACGATTTTTGTCGTGGGACAATGAGATCTAT
ACGCATACATTGATTCCTGGTAACATGCCCCGCCGCCTTTTGGGCCCCAT
GGCCTTTCGCGGTGGAGGAATGCAGTGCATTGGTACCGCCCCCCCTGAAA
GTCAGACGAAACGGGTGTATTATATGATTGTGAAGAAAGATGATCTCACG
AAAACTTTCCTTTTTGATAGTTTAGTGCCGCAGCTCGAGGATTGGTGCCA
CAAAATCACTCTCCATGTTACGATTGGAATTGTGAGTGCAAACTGCACAA
CAGCGTTAATTGAATCCAGCAGTAAAAGCAAAGATTCAAACGCCATTGAC
ATCCTTAATGGGCTGCCAGAAGTAGTCACCCTTATATCTGGTCTGCCAGA
TCCAACAATGTCAGAAGCTGTTGTATGA
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Synonyms
Publications