jgi.p|Nanoce1779_2|610749, mRNA_10492 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610749
Unique NamemRNA_10492
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1421
Alignment locationscaffold_52:77215..78635 +

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Properties
Property NameValue
TranscriptId610835
TrackFilteredModels2
ProteinId610749
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:77215..78635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610749gene_10492Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610749mRNA_10492-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10492CDS_10492Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10492 ID=mRNA_10492|Name=jgi.p|Nanoce1779_2|610749|organism=Nannochloropsis oceanica|type=mRNA|length=1421bp
TGTAATAGCTTATACGGGTCGTGCACCTCATCTCCGTCTGCGCCCGCTCC
GATTCCCACGCCGCCTCCGACACCAGCACCTGCGCCTGCTTCGACATCGG
CACCGTCCACTTCCACAGTGTCGGCAAATGGAGCATGTGGCGCCTCTGCC
GGTGTGTGTCCAGCAGGCTTGTGCTGTAGCCAGTACGGTTGGTGTGGTAC
GACACCAGCTTATTGTGGCTTTGGATGTAATAGCTTATACGGGTCGTGTA
CCGAAATCGGTGATGTCGATACGGTTCCCGCAGGTATCGCTATCTACGAG
TGCAATCTTCCAGGTGTCGTGGCCTTGACATTCGATGATGGCCCCGCGCC
GGCAACATCCGCCATCTTAGATACGTTGAAAACGAAAGCTGCCATTGCTA
CATTCTTCATTGTGGGTGACATGTTCAATGGAGTTGTAGGGCCCACCTCG
CGCACAGCCGTTGTAAGGCGCACTTATGCTGAAGGACATATGGTTGGAAT
TCACGACACGATCCATGCTGATTTGACAACGCTTTCTGCCGCTGAGGTAA
GTTTGCACATGACAACGATGAAGTCGGTGATTGAGGGAGCCATCAGTGAA
ACACCTCGTTATATGCGTTGTCCTTATGGCTACTACAACGACAATATTTT
GTCTGTGCTAGCTGCTCGAAACCTACGTCATACTCACTGGACCATGGACC
CGAGAGACTGGGAAAGTCGTAATGCTGCTGTTACACTGGATAGAATCAAT
TCTTACTTGGACACTGTGACAAGGTCATCTCCAGGATCGATTATCTTGCT
TCATGACGTTTACGATGAGACAGTGGTCGCAGTTGGTCCGATCATTGACA
AAATTCGGGCAAAGGGTTTAAAATTGGTCACTGTCGCGGAATGCATGAAC
GATAAAGATGGTGCCTATGTTGCCAAGTAAAATCTTTTTCTCCGTGTACT
CCGTGTACACCGAGTCTGTGGCAGAACTTTGGATGGGCTCATTAAAGATT
AATCACAGTAAGGTGAAGAAGGCGAGAATAATTGTCTTCTTGACCTCCAC
ATGCCACTTCAATTCAACGCTGGCGGGAAAGGCCGTGTAAGCATAATGGT
CATTCATCTCCTCGCGATGCACCCTTACAACTGAGCACTTCCCCCCCTTC
AGGGAGAGTGCTGCTCCACTACCGACGTAATGTCGGTCTTGCCCGTCAAG
TCTTCCATGCCGTCGATGCATATCCGTTTCCTAGCCGACTTCCTCTCATG
ATCAACCTCGGCCATTCTATATTTCGGCTTCTCTCCTACTCCTCCGGTCT
TAGGTGACCATAAACGACGTCGACGCTAGTTCTTGAGGCAGATGACACCC
AGGAGTTTTGCTGCAGCTGTACCTCCGTAGAGAAGTCAACGTTATTGACT
TTATAATAGACTCGTTTGTCA
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protein sequence of jgi.p|Nanoce1779_2|610749

>mRNA_10492-protein ID=mRNA_10492-protein|Name=jgi.p|Nanoce1779_2|610749|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MFNGVVGPTSRTAVVRRTYAEGHMVGIHDTIHADLTTLSAAEVSLHMTTM
KSVIEGAISETPRYMRCPYGYYNDNILSVLAARNLRHTHWTMDPRDWESR
NAAVTLDRINSYLDTVTRSSPGSIILLHDVYDETVVAVGPIIDKIRAKGL
KLVTVAECMNDKDGAYVAK*
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mRNA from alignment at scaffold_52:77215..78635+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10492 ID=mRNA_10492|Name=jgi.p|Nanoce1779_2|610749|organism=Nannochloropsis oceanica|type=mRNA|length=1421bp|location=Sequence derived from alignment at scaffold_52:77215..78635+ (Nannochloropsis oceanica)
TGTAATAGCTTATACGGGTCGTGCACCTCATCTCCGTCTGCGCCCGCTCC
GATTCCCACGCCGCCTCCGACACCAGCACCTGCGCCTGCTTCGACATCGG
CACCGTCCACTTCCACAGTGTCGGCAAATGGAGCATGTGGCGCCTCTGCC
GGTGTGTGTCCAGCAGGCTTGTGCTGTAGCCAGTACGGTTGGTGTGGTAC
GACACCAGCTTATTGTGGCTTTGGATGTAATAGCTTATACGGGTCGTGTA
CCGAAATCGGTGATGTCGATACGGTTCCCGCAGGTATCGCTATCTACGAG
TGCAATCTTCCAGGTGTCGTGGCCTTGACATTCGATGATGGCCCCGCGCC
GGCAACATCCGCCATCTTAGATACGTTGAAAACGAAAGCTGCCATTGCTA
CATTCTTCATTGTGGGTGACATGTTCAATGGAGTTGTAGGGCCCACCTCG
CGCACAGCCGTTGTAAGGCGCACTTATGCTGAAGGACATATGGTTGGAAT
TCACGACACGATCCATGCTGATTTGACAACGCTTTCTGCCGCTGAGGTAA
GTTTGCACATGACAACGATGAAGTCGGTGATTGAGGGAGCCATCAGTGAA
ACACCTCGTTATATGCGTTGTCCTTATGGCTACTACAACGACAATATTTT
GTCTGTGCTAGCTGCTCGAAACCTACGTCATACTCACTGGACCATGGACC
CGAGAGACTGGGAAAGTCGTAATGCTGCTGTTACACTGGATAGAATCAAT
TCTTACTTGGACACTGTGACAAGGTCATCTCCAGGATCGATTATCTTGCT
TCATGACGTTTACGATGAGACAGTGGTCGCAGTTGGTCCGATCATTGACA
AAATTCGGGCAAAGGGTTTAAAATTGGTCACTGTCGCGGAATGCATGAAC
GATAAAGATGGTGCCTATGTTGCCAAGTAAAATCTTTTTCTCCGTGTACT
CCGTGTACACCGAGTCTGTGGCAGAACTTTGGATGGGCTCATTAAAGATT
AATCACAGTAAGGTGAAGAAGGCGAGAATAATTGTCTTCTTGACCTCCAC
ATGCCACTTCAATTCAACGCTGGCGGGAAAGGCCGTGTAAGCATAATGGT
CATTCATCTCCTCGCGATGCACCCTTACAACTGAGCACTTCCCCCCCTTC
AGGGAGAGTGCTGCTCCACTACCGACGTAATGTCGGTCTTGCCCGTCAAG
TCTTCCATGCCGTCGATGCATATCCGTTTCCTAGCCGACTTCCTCTCATG
ATCAACCTCGGCCATTCTATATTTCGGCTTCTCTCCTACTCCTCCGGTCT
TAGGTGACCATAAACGACGTCGACGCTAGTTCTTGAGGCAGATGACACCC
AGGAGTTTTGCTGCAGCTGTACCTCCGTAGAGAAGTCAACGTTATTGACT
TTATAATAGACTCGTTTGTCA
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Coding sequence (CDS) from alignment at scaffold_52:77215..78635+

>mRNA_10492 ID=mRNA_10492|Name=jgi.p|Nanoce1779_2|610749|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_52:77215..78635+ (Nannochloropsis oceanica)
ATGTTCAATGGAGTTGTAGGGCCCACCTCGCGCACAGCCGTTGTAAGGCG
CACTTATGCTGAAGGACATATGGTTGGAATTCACGACACGATCCATGCTG
ATTTGACAACGCTTTCTGCCGCTGAGGTAAGTTTGCACATGACAACGATG
AAGTCGGTGATTGAGGGAGCCATCAGTGAAACACCTCGTTATATGCGTTG
TCCTTATGGCTACTACAACGACAATATTTTGTCTGTGCTAGCTGCTCGAA
ACCTACGTCATACTCACTGGACCATGGACCCGAGAGACTGGGAAAGTCGT
AATGCTGCTGTTACACTGGATAGAATCAATTCTTACTTGGACACTGTGAC
AAGGTCATCTCCAGGATCGATTATCTTGCTTCATGACGTTTACGATGAGA
CAGTGGTCGCAGTTGGTCCGATCATTGACAAAATTCGGGCAAAGGGTTTA
AAATTGGTCACTGTCGCGGAATGCATGAACGATAAAGATGGTGCCTATGT
TGCCAAGTAA
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Synonyms
Publications