jgi.p|Nanoce1779_2|634025, mRNA_10490 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|634025
Unique NamemRNA_10490
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1461
Alignment locationscaffold_52:71248..72855 -

Link to JBrowse

Properties
Property NameValue
TranscriptId634111
TrackFilteredModels2
ProteinId634025
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:71248..72855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634025gene_10490Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634025mRNA_10490-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10490CDS_10490Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10490 ID=mRNA_10490|Name=jgi.p|Nanoce1779_2|634025|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp
AGGGGCATATTCGACCCTCGTAAAGGCCTCGCAGTGGGTATAGATATACT
TGCTGTTTGAGTGAAAACAAGATGACCATGTTAGGACTCAAAGCGCATCC
CCGCCATTTGCCAAATACGGCGTCATCGATCCTTCTGTTTACGCCGCGTA
CCTTTATAACCACATTTCTCATTTTATCCTTCTCATGGACCTTGTTCCTG
GTGGCACTACAACAATTTTCTGAAAGACGGTGTTCTCAATTGAGACCAGA
TCTTACCCTTTTCGCTGGTCATATTAACTATGAACTTCCCTTCCCAGTGT
ATTATATTAACATGGAGCAAAGCTCTGGGCGGCGAGAGAGAATGGAGCTC
GATTTCGGTGGTATATGGGACTTGCGAAGAAGTCCGGCCGTGGATGGAAT
GGATATAGATATCGTCCTCCAGCTCATGGGCCGGATGAACTACGACGATA
TTCATTCGTCTATCTCAGACGACAGGCGTCAAGGCACCATCAACGGCGCA
GAGCTTGGCTGTGTGCTATCACATCTTACAGCGATAAGGCGCGCGTACCT
CGAAGGGAACGAGATTGCCATGATTGTAGAAGATGATATCACCCCGTTAC
TCATGCCATTTTGGACGAACTCACTCGTCGACGTTATCAACGAGGCAGGA
AACTATTCAGCTGGCACGTGGGACATGGTTCAGATGGCTTGGATTTGGGG
CATGGATGAGACCTTATATGATCGAGATGCGCATAATTTTGGTCCAGACC
GTCATCTGTTACAAACACGATTTCAATTCGGCACCTCAGCGTATGTCATT
TCCAAGGGAGGAATGGGAAAAATCCTCAATGCCTACTTCACTGACAGAAC
AGAGACCGGGCAGATTCGCCTTCGAAAAGGGGGCGACCAAGCAGAGCTCT
ACATTTACGGTGCTATTTCGAATCTCTATGTTGCTATGCCCTCGTTTTTC
ACTATTGAGGGATCTGATACTACCATTTCTGTAGGAGAAGAAAGCCAACG
ACGCTTATCAAGCCATCGAGAGTCGAACAGTATCCACATCAAGACCACCT
TTGACCTTTTTCATGAGATGAAAAAGGAAAAGCTCATCTCCAAGGAAAAC
CTAGAGTGAGCAATGGACCACTTGGGCTCTGTGAAACAGTCCAAATGCCA
TAACAAAGAAAATACGAGTTCCTTCTACATTGCTCTTGTAGCTCATTTGT
GTGTTTGTTTGTTTCTGTTTCCCACGTACAAATCATTCTGCCATCGTCAA
AAAAGATCTAAAGTGGGCGGGATTGCTACGAGACTGTTGTCATGATCTGA
TGTGTACACCTGCGGGTGAAATGAGTTAGGATAGACATTTTCAAGCCATG
CCCAGAAATTTACCTCCCACACAAGCGTTTGAGTCTGGGAAAGGAATAAC
TTGAGGGTGTCGGAGCACAAGTTATACCACTGTTCCAAAGATCTTCTATC
GCCCATAAATA
back to top

protein sequence of jgi.p|Nanoce1779_2|634025

>mRNA_10490-protein ID=mRNA_10490-protein|Name=jgi.p|Nanoce1779_2|634025|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MTMLGLKAHPRHLPNTASSILLFTPRTFITTFLILSFSWTLFLVALQQFS
ERRCSQLRPDLTLFAGHINYELPFPVYYINMEQSSGRRERMELDFGGIWD
LRRSPAVDGMDIDIVLQLMGRMNYDDIHSSISDDRRQGTINGAELGCVLS
HLTAIRRAYLEGNEIAMIVEDDITPLLMPFWTNSLVDVINEAGNYSAGTW
DMVQMAWIWGMDETLYDRDAHNFGPDRHLLQTRFQFGTSAYVISKGGMGK
ILNAYFTDRTETGQIRLRKGGDQAELYIYGAISNLYVAMPSFFTIEGSDT
TISVGEESQRRLSSHRESNSIHIKTTFDLFHEMKKEKLISKENLE*
back to top

mRNA from alignment at scaffold_52:71248..72855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10490 ID=mRNA_10490|Name=jgi.p|Nanoce1779_2|634025|organism=Nannochloropsis oceanica|type=mRNA|length=1608bp|location=Sequence derived from alignment at scaffold_52:71248..72855- (Nannochloropsis oceanica)
AGGGGCATATTCGACCCTCGTAAAGGCCTCGCAGTGGGTATAGATATACT
TGCTGTTTGAGTGAAAACAAGATGACCATGTTAGGACTCAAAGCGCATCC
CCGCCATTTGCCAAATACGGCGTCATCGATCCTTCTGTTTACGCCGCGTA
CCTTTATAACCACATTTCTCATTTTATCCTTCTCATGGACCTTGTTCCTG
GTGGCACTACAACAATTTTCTGAAAGACGGTGTTCTCAATTGAGGTACGA
CGAAAGATGATACTCCAGCTTTCAAAATGTCTGCCCGTACCTAATCAATC
ACCGAAACCCACAGACCAGATCTTACCCTTTTCGCTGGTCATATTAACTA
TGAACTTCCCTTCCCAGTGTATTATATTAACATGGAGCAAAGCTCTGGGC
GGCGAGAGAGAATGGAGCTCGATTTCGGTGGTATATGGGACTTGCGAAGA
AGTCCGGCCGTGGATGGAATGGATATAGATATCGTCCTCCAGCTCATGGG
CCGGATGAACTACGACGATATTCATTCGTCTATCTCAGACGACAGGCGTC
AAGGCACCATCAACGGCGCAGAGCTTGGCTGTGTGCTATCACATCTTACA
GCGATAAGGCGCGCGTACCTCGAAGGGAACGAGATTGCCATGATTGTAGA
AGATGATATCACCCCGTTACTCATGTTAGTACGCGTGGGATGGCTGATTT
GCATTCTTTCTTCTTGTCCTTACATGCACATTTCATTCACACCACCTGTA
GGCCATTTTGGACGAACTCACTCGTCGACGTTATCAACGAGGCAGGAAAC
TATTCAGCTGGCACGTGGGACATGGTTCAGATGGCTTGGATTTGGGGCAT
GGATGAGACCTTATATGATCGAGATGCGCATAATTTTGGTCCAGACCGTC
ATCTGTTACAAACACGATTTCAATTCGGCACCTCAGCGTATGTCATTTCC
AAGGGAGGAATGGGAAAAATCCTCAATGCCTACTTCACTGACAGAACAGA
GACCGGGCAGATTCGCCTTCGAAAAGGGGGCGACCAAGCAGAGCTCTACA
TTTACGGTGCTATTTCGAATCTCTATGTTGCTATGCCCTCGTTTTTCACT
ATTGAGGGATCTGATACTACCATTTCTGTAGGAGAAGAAAGCCAACGACG
CTTATCAAGCCATCGAGAGTCGAACAGTATCCACATCAAGACCACCTTTG
ACCTTTTTCATGAGATGAAAAAGGAAAAGCTCATCTCCAAGGAAAACCTA
GAGTGAGCAATGGACCACTTGGGCTCTGTGAAACAGTCCAAATGCCATAA
CAAAGAAAATACGAGTTCCTTCTACATTGCTCTTGTAGCTCATTTGTGTG
TTTGTTTGTTTCTGTTTCCCACGTACAAATCATTCTGCCATCGTCAAAAA
AGATCTAAAGTGGGCGGGATTGCTACGAGACTGTTGTCATGATCTGATGT
GTACACCTGCGGGTGAAATGAGTTAGGATAGACATTTTCAAGCCATGCCC
AGAAATTTACCTCCCACACAAGCGTTTGAGTCTGGGAAAGGAATAACTTG
AGGGTGTCGGAGCACAAGTTATACCACTGTTCCAAAGATCTTCTATCGCC
CATAAATA
back to top

Coding sequence (CDS) from alignment at scaffold_52:71248..72855-

>mRNA_10490 ID=mRNA_10490|Name=jgi.p|Nanoce1779_2|634025|organism=Nannochloropsis oceanica|type=CDS|length=3114bp|location=Sequence derived from alignment at scaffold_52:71248..72855- (Nannochloropsis oceanica)
GCCATTTTGGACGAACTCACTCGTCGACGTTATCAACGAGGCAGGAAACT
ATTCAGCTGGCACGTGGGACATGGTTCAGATGGCTTGGATTTGGGGCATG
GATGAGACCTTATATGATCGAGATGCGCATAATTTTGGTCCAGACCGTCA
TCTGTTACAAACACGATTTCAATTCGGCACCTCAGCGTATGTCATTTCCA
AGGGAGGAATGGGAAAAATCCTCAATGCCTACTTCACTGACAGAACAGAG
ACCGGGCAGATTCGCCTTCGAAAAGGGGGCGACCAAGCAGAGCTCTACAT
TTACGGTGCTATTTCGAATCTCTATGTTGCTATGCCCTCGTTTTTCACTA
TTGAGGGATCTGATACTACCATTTCTGTAGGAGAAGAAAGCCAACGACGC
TTATCAAGCCATCGAGAGTCGAACAGTATCCACATCAAGACCACCTTTGA
CCTTTTTCATGAGATGAAAAAGGAAAAGCTCATCTCCAAGGAAAACCTAG
AGTGAACCAGATCTTACCCTTTTCGCTGGTCATATTAACTATGAACTTCC
CTTCCCAGTGTATTATATTAACATGGAGCAAAGCTCTGGGCGGCGAGAGA
GAATGGAGCTCGATTTCGGTGGTATATGGGACTTGCGAAGAAGTCCGGCC
GTGGATGGAATGGATATAGATATCGTCCTCCAGCTCATGGGCCGGATGAA
CTACGACGATATTCATTCGTCTATCTCAGACGACAGGCGTCAAGGCACCA
TCAACGGCGCAGAGCTTGGCTGTGTGCTATCACATCTTACAGCGATAAGG
CGCGCGTACCTCGAAGGGAACGAGATTGCCATGATTGTAGAAGATGATAT
CACCCCGTTACTCATATGACCATGTTAGGACTCAAAGCGCATCCCCGCCA
TTTGCCAAATACGGCGTCATCGATCCTTCTGTTTACGCCGCGTACCTTTA
TAACCACATTTCTCATTTTATCCTTCTCATGGACCTTGTTCCTGGTGGCA
CTACAACAATTTTCTGAAAGACGGTGTTCTCAATTGAGGCCATTTTGGAC
GAACTCACTCGTCGACGTTATCAACGAGGCAGGAAACTATTCAGCTGGCA
CGTGGGACATGGTTCAGATGGCTTGGATTTGGGGCATGGATGAGACCTTA
TATGATCGAGATGCGCATAATTTTGGTCCAGACCGTCATCTGTTACAAAC
ACGATTTCAATTCGGCACCTCAGCGTATGTCATTTCCAAGGGAGGAATGG
GAAAAATCCTCAATGCCTACTTCACTGACAGAACAGAGACCGGGCAGATT
CGCCTTCGAAAAGGGGGCGACCAAGCAGAGCTCTACATTTACGGTGCTAT
TTCGAATCTCTATGTTGCTATGCCCTCGTTTTTCACTATTGAGGGATCTG
ATACTACCATTTCTGTAGGAGAAGAAAGCCAACGACGCTTATCAAGCCAT
CGAGAGTCGAACAGTATCCACATCAAGACCACCTTTGACCTTTTTCATGA
GATGAAAAAGGAAAAGCTCATCTCCAAGGAAAACCTAGAGTGAACCAGAT
CTTACCCTTTTCGCTGGTCATATTAACTATGAACTTCCCTTCCCAGTGTA
TTATATTAACATGGAGCAAAGCTCTGGGCGGCGAGAGAGAATGGAGCTCG
ATTTCGGTGGTATATGGGACTTGCGAAGAAGTCCGGCCGTGGATGGAATG
GATATAGATATCGTCCTCCAGCTCATGGGCCGGATGAACTACGACGATAT
TCATTCGTCTATCTCAGACGACAGGCGTCAAGGCACCATCAACGGCGCAG
AGCTTGGCTGTGTGCTATCACATCTTACAGCGATAAGGCGCGCGTACCTC
GAAGGGAACGAGATTGCCATGATTGTAGAAGATGATATCACCCCGTTACT
CATATGACCATGTTAGGACTCAAAGCGCATCCCCGCCATTTGCCAAATAC
GGCGTCATCGATCCTTCTGTTTACGCCGCGTACCTTTATAACCACATTTC
TCATTTTATCCTTCTCATGGACCTTGTTCCTGGTGGCACTACAACAATTT
TCTGAAAGACGGTGTTCTCAATTGAGGCCATTTTGGACGAACTCACTCGT
CGACGTTATCAACGAGGCAGGAAACTATTCAGCTGGCACGTGGGACATGG
TTCAGATGGCTTGGATTTGGGGCATGGATGAGACCTTATATGATCGAGAT
GCGCATAATTTTGGTCCAGACCGTCATCTGTTACAAACACGATTTCAATT
CGGCACCTCAGCGTATGTCATTTCCAAGGGAGGAATGGGAAAAATCCTCA
ATGCCTACTTCACTGACAGAACAGAGACCGGGCAGATTCGCCTTCGAAAA
GGGGGCGACCAAGCAGAGCTCTACATTTACGGTGCTATTTCGAATCTCTA
TGTTGCTATGCCCTCGTTTTTCACTATTGAGGGATCTGATACTACCATTT
CTGTAGGAGAAGAAAGCCAACGACGCTTATCAAGCCATCGAGAGTCGAAC
AGTATCCACATCAAGACCACCTTTGACCTTTTTCATGAGATGAAAAAGGA
AAAGCTCATCTCCAAGGAAAACCTAGAGTGAACCAGATCTTACCCTTTTC
GCTGGTCATATTAACTATGAACTTCCCTTCCCAGTGTATTATATTAACAT
GGAGCAAAGCTCTGGGCGGCGAGAGAGAATGGAGCTCGATTTCGGTGGTA
TATGGGACTTGCGAAGAAGTCCGGCCGTGGATGGAATGGATATAGATATC
GTCCTCCAGCTCATGGGCCGGATGAACTACGACGATATTCATTCGTCTAT
CTCAGACGACAGGCGTCAAGGCACCATCAACGGCGCAGAGCTTGGCTGTG
TGCTATCACATCTTACAGCGATAAGGCGCGCGTACCTCGAAGGGAACGAG
ATTGCCATGATTGTAGAAGATGATATCACCCCGTTACTCATATGACCATG
TTAGGACTCAAAGCGCATCCCCGCCATTTGCCAAATACGGCGTCATCGAT
CCTTCTGTTTACGCCGCGTACCTTTATAACCACATTTCTCATTTTATCCT
TCTCATGGACCTTGTTCCTGGTGGCACTACAACAATTTTCTGAAAGACGG
TGTTCTCAATTGAG
back to top
Synonyms
Publications