jgi.p|Nanoce1779_2|634024, mRNA_10489 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|634024
Unique NamemRNA_10489
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1053
Alignment locationscaffold_52:70222..71462 +

Link to JBrowse

Properties
Property NameValue
TranscriptId634110
TrackFilteredModels2
ProteinId634024
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:70222..71462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634024gene_10489Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634024mRNA_10489-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10489CDS_10489Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10489 ID=mRNA_10489|Name=jgi.p|Nanoce1779_2|634024|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp
CAGATCCAATACGGCCGAAGGGAAAAATCAATTCAGCTTGTACACCACGA
CTGTCTTTGCTTAGATCTTTATAATAATATAATGCCTTATTCCAAATACA
AAGAAAAGTACACCCATAAGAGGCGAGTTTCCTCACCGATGGTTATGATC
AGGGTTTGGATGGTTTCTATGGCAATGATCGCTGGCGTCATTTTAATAGC
ATTCATAACCAAATATCCGAATGAAGCGTTCTACCTTGGTGATGAAGGTC
GCATTCGCCAAGCGACTCCTCCTTCACGTGCTCCAGTCCATACCAAGCTT
GTGTTTGTGACGGCCTGGATCGATCTGGGACCCGAACATACGGAAAAGAC
GCCGGCTTCGAGGCTAGAACACTTTCAAAGACTGGCTACAAGCGGTATTT
CTTTGTTTGTATTTGCCAGCCCTACTTATATTGCTATCATGGAGGAAGTC
CGGACCCAGTTCCCCAACATTGTCGGGCTACAGTCTGTGGAAATGGAGGA
CCTTCAGTCAGTGCAAACCATTAGGTCTTTTACTGACTTGAGACTCCCTA
CCGTTTTGACCAAGATAAAGGACACGCACGGCTATCTTGAGCTCATGCTA
GCAAAAATCGACTTCGTCTACCAAGCTCTCGCTTATACGGACGCAACCCA
CCTTGCATGGATAGACTTTAGTATAGCCCATGTATTTGATGATTCAGTTA
ATGCTCTGGAAGCATTACAAGACTTGCAGCAGAGGGATCTCGTGCCTTCC
CTTCTTACATTCCCTGTTATCTGGGATCGCTCCGGTATCAATATGGAGGA
ACTGATCCAACGAGTCAACTGGCGATTTGCCGGGAGTTTATTTATGGGCG
ATAGAAGATCTTTGGAACAGTGGTATAACTTGTGCTCCGACACCCTCAAG
TTATTCCTTTCCCAGACTCAAACGCTTGTGTGGGAGGTAAATTTCTGGGC
ATGGCTTGAAAATGTCTATCCTAACTCATTTCACCCGCAGGTGTACACAT
CAGATCATGACAACAGTCTCGTAGCAATCCCGCCCACTTTAGATCTTTTT
TGA
back to top

protein sequence of jgi.p|Nanoce1779_2|634024

>mRNA_10489-protein ID=mRNA_10489-protein|Name=jgi.p|Nanoce1779_2|634024|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MPYSKYKEKYTHKRRVSSPMVMIRVWMVSMAMIAGVILIAFITKYPNEAF
YLGDEGRIRQATPPSRAPVHTKLVFVTAWIDLGPEHTEKTPASRLEHFQR
LATSGISLFVFASPTYIAIMEEVRTQFPNIVGLQSVEMEDLQSVQTIRSF
TDLRLPTVLTKIKDTHGYLELMLAKIDFVYQALAYTDATHLAWIDFSIAH
VFDDSVNALEALQDLQQRDLVPSLLTFPVIWDRSGINMEELIQRVNWRFA
GSLFMGDRRSLEQWYNLCSDTLKLFLSQTQTLVWEVNFWAWLENVYPNSF
HPQVYTSDHDNSLVAIPPTLDLF*
back to top

mRNA from alignment at scaffold_52:70222..71462+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10489 ID=mRNA_10489|Name=jgi.p|Nanoce1779_2|634024|organism=Nannochloropsis oceanica|type=mRNA|length=1241bp|location=Sequence derived from alignment at scaffold_52:70222..71462+ (Nannochloropsis oceanica)
CAGATCCAATACGGCCGAAGGGAAAAATCAATTCAGCTTGTACACCACGA
CTGTCTTTGCTTAGATCTTTATAATAATATGTAAGTGCTTGAGTAGACTG
ATGATCAAGCGTCTTAAAAAACTTTCCTAAGACGAAGGGCACAAAAACTC
TTCTGAATTGTTTGCACGTCCACGGTCTTTGTTTTGTAATAATCTACATC
CCCTGTCTTCATTCTAAAGTCTCATTAATACAGTAATACTCACCCATTTT
CTTGGTCTTCTAAAACAGAATGCCTTATTCCAAATACAAAGAAAAGTACA
CCCATAAGAGGCGAGTTTCCTCACCGATGGTTATGATCAGGGTTTGGATG
GTTTCTATGGCAATGATCGCTGGCGTCATTTTAATAGCATTCATAACCAA
ATATCCGAATGAAGCGTTCTACCTTGGTGATGAAGGTCGCATTCGCCAAG
CGACTCCTCCTTCACGTGCTCCAGTCCATACCAAGCTTGTGTTTGTGACG
GCCTGGATCGATCTGGGACCCGAACATACGGAAAAGACGCCGGCTTCGAG
GCTAGAACACTTTCAAAGACTGGCTACAAGCGGTATTTCTTTGTTTGTAT
TTGCCAGCCCTACTTATATTGCTATCATGGAGGAAGTCCGGACCCAGTTC
CCCAACATTGTCGGGCTACAGTCTGTGGAAATGGAGGACCTTCAGTCAGT
GCAAACCATTAGGTCTTTTACTGACTTGAGACTCCCTACCGTTTTGACCA
AGATAAAGGACACGCACGGCTATCTTGAGCTCATGCTAGCAAAAATCGAC
TTCGTCTACCAAGCTCTCGCTTATACGGACGCAACCCACCTTGCATGGAT
AGACTTTAGTATAGCCCATGTATTTGATGATTCAGTTAATGCTCTGGAAG
CATTACAAGACTTGCAGCAGAGGGATCTCGTGCCTTCCCTTCTTACATTC
CCTGTTATCTGGGATCGCTCCGGTATCAATATGGAGGAACTGATCCAACG
AGTCAACTGGCGATTTGCCGGGAGTTTATTTATGGGCGATAGAAGATCTT
TGGAACAGTGGTATAACTTGTGCTCCGACACCCTCAAGTTATTCCTTTCC
CAGACTCAAACGCTTGTGTGGGAGGTAAATTTCTGGGCATGGCTTGAAAA
TGTCTATCCTAACTCATTTCACCCGCAGGTGTACACATCAGATCATGACA
ACAGTCTCGTAGCAATCCCGCCCACTTTAGATCTTTTTTGA
back to top

Coding sequence (CDS) from alignment at scaffold_52:70222..71462+

>mRNA_10489 ID=mRNA_10489|Name=jgi.p|Nanoce1779_2|634024|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_52:70222..71462+ (Nannochloropsis oceanica)
ATGCCTTATTCCAAATACAAAGAAAAGTACACCCATAAGAGGCGAGTTTC
CTCACCGATGGTTATGATCAGGGTTTGGATGGTTTCTATGGCAATGATCG
CTGGCGTCATTTTAATAGCATTCATAACCAAATATCCGAATGAAGCGTTC
TACCTTGGTGATGAAGGTCGCATTCGCCAAGCGACTCCTCCTTCACGTGC
TCCAGTCCATACCAAGCTTGTGTTTGTGACGGCCTGGATCGATCTGGGAC
CCGAACATACGGAAAAGACGCCGGCTTCGAGGCTAGAACACTTTCAAAGA
CTGGCTACAAGCGGTATTTCTTTGTTTGTATTTGCCAGCCCTACTTATAT
TGCTATCATGGAGGAAGTCCGGACCCAGTTCCCCAACATTGTCGGGCTAC
AGTCTGTGGAAATGGAGGACCTTCAGTCAGTGCAAACCATTAGGTCTTTT
ACTGACTTGAGACTCCCTACCGTTTTGACCAAGATAAAGGACACGCACGG
CTATCTTGAGCTCATGCTAGCAAAAATCGACTTCGTCTACCAAGCTCTCG
CTTATACGGACGCAACCCACCTTGCATGGATAGACTTTAGTATAGCCCAT
GTATTTGATGATTCAGTTAATGCTCTGGAAGCATTACAAGACTTGCAGCA
GAGGGATCTCGTGCCTTCCCTTCTTACATTCCCTGTTATCTGGGATCGCT
CCGGTATCAATATGGAGGAACTGATCCAACGAGTCAACTGGCGATTTGCC
GGGAGTTTATTTATGGGCGATAGAAGATCTTTGGAACAGTGGTATAACTT
GTGCTCCGACACCCTCAAGTTATTCCTTTCCCAGACTCAAACGCTTGTGT
GGGAGGTAAATTTCTGGGCATGGCTTGAAAATGTCTATCCTAACTCATTT
CACCCGCAGGTGTACACATCAGATCATGACAACAGTCTCGTAGCAATCCC
GCCCACTTTAGATCTTTTTTGA
back to top
Synonyms
Publications