jgi.p|Nanoce1779_2|610741, mRNA_10486 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610741
Unique NamemRNA_10486
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1356
Alignment locationscaffold_52:62697..64146 +

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Properties
Property NameValue
TranscriptId610827
TrackFilteredModels2
ProteinId610741
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:62697..64146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610741gene_10486Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610741mRNA_10486-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10486CDS_10486Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10486 ID=mRNA_10486|Name=jgi.p|Nanoce1779_2|610741|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp
CAACAGACTTCTACCAATTTACAGCCTTATTTGTGAGAATATGAAGAAGA
ATAATGCACCCAAAAGCATAGGAAAGACCGCTGCTTTCATTTTAACCTTC
ATCATGGTCTATATCTTCCTATCACACGGCGAGAGCGTGCTCATGAATTT
TTTTCAAACAAGTGGTCATGCTAAGGAGAGTACCCACCTATTTGGTGGTA
TTGATTACAAATTGCCTTTTCCTGTGTACTATATCAACATGAATGGCAGC
GAAGATCGTCGGCAGCGTACTGAACTCCTCTTTGGGAACTTATGGGATCT
TCGACGGAGTCCGGCGGTAGCAGGGAGTGATTCAGAAGCTTTAATGGAGC
TCATGGGTGTGGATAATTATCAGCGAACCGCCAACTACATTCAGCATGAG
AGATATGATGATGAAGATGTGGCGTGGAACGAAGCTGGATGCACGTTGTC
CCATTTGACCACTATCCGGAAGGCATATTTGGATAGCAATGAGGTGGTCA
TGGTTATGGAGGACGATGTATCGCCAGCTTTGATGCCGTTTTGGTCATCG
TCCATAGTCGACCTCATAAATGAGGCCGATAGGATGAACTCTTCTATTCC
CTGGCACTTGATCCAAGCAGGATGGACTTGGGAAAAGGATAAGGAGATCT
ATATTAAAAATCGTCCCCACCCAGGACGGCAACTAGTACAGGAACGGTTT
CAATGGGGACTTTTTGCGTATATTATAAATAGACGCGGGATGGAGACGTT
CTTAGATGCCTATTTCTCCGACAGATCCCCGACAGGCTTGATCCGCCACT
TAAACGTGGGTGAAGTGGCTGAAAACTACTTTAATATATTAGAGACCAGC
ATCTACGTTGCTCTTCCTTCTTTATTTGTCATTCACGGGGGCGAAAGCAC
TATTGCTGGTGGACACGAGCATCGCATGCATATTCACCTCCGCTCTAATA
GCGTTCACACACAGGAAACCTTGCGGCTCATGGTTGAGCGCCTCAGAAAT
GAAAACATAGGACAAGAGAATCGTTACAACTGACTTATCCTTTCTACAAG
AAAGCTTCCACAGATTAAGAATGTATGAGGCAAAAAAGTCAACTGGATGT
GGCCCCTTGTGTAAGTTCTCTATTAAGGAACCATGTGTACGCAACCCAGA
ATACTTAGATACCTTGAGTTGGCGTTTCTAGTCGCCAAGAAAAAATGCGA
AAAATGCAATTCTTCGTTGAACTTACTAGAAAAGAAACAATGTTCAGAAT
TACTGCTCACAAGGAAAAAAGCACTAACTTCGAATTTGGATAGGGAAAGG
GGAAGGAGGAGAAGAAGGCAGAAGGAGGCCGGCCCCCTTGAACATCTTGA
TACTGG
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protein sequence of jgi.p|Nanoce1779_2|610741

>mRNA_10486-protein ID=mRNA_10486-protein|Name=jgi.p|Nanoce1779_2|610741|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MKKNNAPKSIGKTAAFILTFIMVYIFLSHGESVLMNFFQTSGHAKESTHL
FGGIDYKLPFPVYYINMNGSEDRRQRTELLFGNLWDLRRSPAVAGSDSEA
LMELMGVDNYQRTANYIQHERYDDEDVAWNEAGCTLSHLTTIRKAYLDSN
EVVMVMEDDVSPALMPFWSSSIVDLINEADRMNSSIPWHLIQAGWTWEKD
KEIYIKNRPHPGRQLVQERFQWGLFAYIINRRGMETFLDAYFSDRSPTGL
IRHLNVGEVAENYFNILETSIYVALPSLFVIHGGESTIAGGHEHRMHIHL
RSNSVHTQETLRLMVERLRNENIGQENRYN*
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mRNA from alignment at scaffold_52:62697..64146+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10486 ID=mRNA_10486|Name=jgi.p|Nanoce1779_2|610741|organism=Nannochloropsis oceanica|type=mRNA|length=1450bp|location=Sequence derived from alignment at scaffold_52:62697..64146+ (Nannochloropsis oceanica)
CAACAGACTTCTACCAATTTACAGCCTTATTTGTGAGAATATGAAGAAGA
ATAATGCACCCAAAAGCATAGGAAAGACCGCTGCTTTCATTTTAACCTTC
ATCATGGTCTATATCTTCCTATCACACGGCGAGAGCGTGCTCATGAATTT
TTTTCAAACAAGTGGTCATGCTAAGGAGAGTACCCACCTATTTGGTGGTA
TTGATTACAAATTGCCTTTTCCTGTGTACTATATCAACATGAATGGCAGC
GAAGATCGTCGGCAGCGTACTGAACTCCTCTTTGGGAACTTATGGGATCT
TCGACGGAGTCCGGCGGTAGCAGGGAGTGATTCAGAAGCTTTAATGGAGC
TCATGGGTGTGGATAATTATCAGCGAACCGCCAACTACATTCAGCATGAG
AGATATGATGATGAAGATGTGGCGTGGAACGAAGCTGGATGCACGTTGTC
CCATTTGACCACTATCCGGAAGGCATATTTGGATAGCAATGAGGTGGTCA
TGGTTATGGAGGACGATGTATCGCCAGCTTTGATGTGAGTTGGTCTCATT
TTGTAACGATGCATTCGCAAATTTCTCTCCTTATCTTCATCACACGACCA
TCTTATATCTCATATCATGCGGATACAGGCCGTTTTGGTCATCGTCCATA
GTCGACCTCATAAATGAGGCCGATAGGATGAACTCTTCTATTCCCTGGCA
CTTGATCCAAGCAGGATGGACTTGGGAAAAGGATAAGGAGATCTATATTA
AAAATCGTCCCCACCCAGGACGGCAACTAGTACAGGAACGGTTTCAATGG
GGACTTTTTGCGTATATTATAAATAGACGCGGGATGGAGACGTTCTTAGA
TGCCTATTTCTCCGACAGATCCCCGACAGGCTTGATCCGCCACTTAAACG
TGGGTGAAGTGGCTGAAAACTACTTTAATATATTAGAGACCAGCATCTAC
GTTGCTCTTCCTTCTTTATTTGTCATTCACGGGGGCGAAAGCACTATTGC
TGGTGGACACGAGCATCGCATGCATATTCACCTCCGCTCTAATAGCGTTC
ACACACAGGAAACCTTGCGGCTCATGGTTGAGCGCCTCAGAAATGAAAAC
ATAGGACAAGAGAATCGTTACAACTGACTTATCCTTTCTACAAGAAAGCT
TCCACAGATTAAGAATGTATGAGGCAAAAAAGTCAACTGGATGTGGCCCC
TTGTGTAAGTTCTCTATTAAGGAACCATGTGTACGCAACCCAGAATACTT
AGATACCTTGAGTTGGCGTTTCTAGTCGCCAAGAAAAAATGCGAAAAATG
CAATTCTTCGTTGAACTTACTAGAAAAGAAACAATGTTCAGAATTACTGC
TCACAAGGAAAAAAGCACTAACTTCGAATTTGGATAGGGAAAGGGGAAGG
AGGAGAAGAAGGCAGAAGGAGGCCGGCCCCCTTGAACATCTTGATACTGG
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Coding sequence (CDS) from alignment at scaffold_52:62697..64146+

>mRNA_10486 ID=mRNA_10486|Name=jgi.p|Nanoce1779_2|610741|organism=Nannochloropsis oceanica|type=CDS|length=1986bp|location=Sequence derived from alignment at scaffold_52:62697..64146+ (Nannochloropsis oceanica)
ATGAAGAAGAATAATGCACCCAAAAGCATAGGAAAGACCGCTGCTTTCAT
TTTAACCTTCATCATGGTCTATATCTTCCTATCACACGGCGAGAGCGTGC
TCATGAATTTTTTTCAAACAAGTGGTCATGCTAAGGAGAGTACCCACCTA
TTTGGTGGTATTGATTACAAATTGCCTTTTCCTGTGTACTATATCAACAT
GAATGGCAGCGAAGATCGTCGGCAGCGTACTGAACTCCTCTTTGGGAACT
TATGGGATCTTCGACGGAGTCCGGCGGTAGCAGGGAGTGATTCAGAAGCT
TTAATGGAGCTCATGGGTGTGGATAATTATCAGCGAACCGCCAACTACAT
TCAGCATGAGAGATATGATGATGAAGATGTGGCGTGGAACGAAGCTGGAT
GCACGTTGTCCCATTTGACCACTATCCGGAAGGCATATTTGGATAGCAAT
GAGGTGGTCATGGTTATGGAGGACGATGTATCGCCAGCTTTGATGCCGTT
TTGGTCATCGTCCATAGTCGACCTCATAAATGAGGCCGATAGGATGAACT
CTTCTATTCCCTGGCACTTGATCCAAGCAGGATGGACTTGGGAAAAGGAT
AAGGAGATCTATATTAAAAATCGTCCCCACCCAGGACGGCAACTAGTACA
GGAACGGTTTCAATGGGGACTTTTTGCGTATATTATAAATAGACGCGGGA
TGGAGACGTTCTTAGATGCCTATTTCTCCGACAGATCCCCGACAGGCTTG
ATCCGCCACTTAAACGTGGGTGAAGTGGCTGAAAACTACTTTAATATATT
AGAGACCAGCATCTACGTTGCTCTTCCTTCTTTATTTGTCATTCACGGGG
GCGAAAGCACTATTGCTGGTGGACACGAGCATCGCATGCATATTCACCTC
CGCTCTAATAGCGTTCACACACAGGAAACCTTGCGGCTCATGGTTGAGCG
CCTCAGAAATGAAAACATAGGACAAGAGAATCGTTACAACTGAATGAAGA
AGAATAATGCACCCAAAAGCATAGGAAAGACCGCTGCTTTCATTTTAACC
TTCATCATGGTCTATATCTTCCTATCACACGGCGAGAGCGTGCTCATGAA
TTTTTTTCAAACAAGTGGTCATGCTAAGGAGAGTACCCACCTATTTGGTG
GTATTGATTACAAATTGCCTTTTCCTGTGTACTATATCAACATGAATGGC
AGCGAAGATCGTCGGCAGCGTACTGAACTCCTCTTTGGGAACTTATGGGA
TCTTCGACGGAGTCCGGCGGTAGCAGGGAGTGATTCAGAAGCTTTAATGG
AGCTCATGGGTGTGGATAATTATCAGCGAACCGCCAACTACATTCAGCAT
GAGAGATATGATGATGAAGATGTGGCGTGGAACGAAGCTGGATGCACGTT
GTCCCATTTGACCACTATCCGGAAGGCATATTTGGATAGCAATGAGGTGG
TCATGGTTATGGAGGACGATGTATCGCCAGCTTTGATGCCGTTTTGGTCA
TCGTCCATAGTCGACCTCATAAATGAGGCCGATAGGATGAACTCTTCTAT
TCCCTGGCACTTGATCCAAGCAGGATGGACTTGGGAAAAGGATAAGGAGA
TCTATATTAAAAATCGTCCCCACCCAGGACGGCAACTAGTACAGGAACGG
TTTCAATGGGGACTTTTTGCGTATATTATAAATAGACGCGGGATGGAGAC
GTTCTTAGATGCCTATTTCTCCGACAGATCCCCGACAGGCTTGATCCGCC
ACTTAAACGTGGGTGAAGTGGCTGAAAACTACTTTAATATATTAGAGACC
AGCATCTACGTTGCTCTTCCTTCTTTATTTGTCATTCACGGGGGCGAAAG
CACTATTGCTGGTGGACACGAGCATCGCATGCATATTCACCTCCGCTCTA
ATAGCGTTCACACACAGGAAACCTTGCGGCTCATGGTTGAGCGCCTCAGA
AATGAAAACATAGGACAAGAGAATCGTTACAACTGA
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Synonyms
Publications