jgi.p|Nanoce1779_2|634020, mRNA_10485 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|634020
Unique NamemRNA_10485
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length986
Alignment locationscaffold_52:60603..61741 -

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Properties
Property NameValue
TranscriptId634106
TrackFilteredModels2
ProteinId634020
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:60603..61741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634020gene_10485Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634020mRNA_10485-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10485CDS_10485Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10485 ID=mRNA_10485|Name=jgi.p|Nanoce1779_2|634020|organism=Nannochloropsis oceanica|type=mRNA|length=986bp
ATGGCGTCGACCGAGTGCTTTTTTAAGAACGACTTCCCGCTCACCGAGCA
TGTGGAGACCAAGCTCTACCGACCGATTGCACCGCTTGGCGAGACCCCCC
TGCCGCTGCAAGAGATCCAGGCGGGTGCAGTAGGTTTTTTGAGCACAGGG
AAGCAGCAGCAAACTACGAAAGAGGACGTATCGAAATTAACGGCGGAAGC
AAGGCGGAGCGACTCAAGGTACGCGCACGCATGTACAAATTGCTTGTCTC
GCCATCGCCGCAAACAGCTACATGGTGACCTGCGCAGTGACGGGAATTGC
ATGGGAATATACAGGGATATTATCGACAATGCGCTGGACATGATGTGTGT
CATTCCATCAAACAATCGAAGCCAGATACTGTACATCAATAAGACCGCTC
AATACATCCTACAGACTGAGCCCGCGCATTTAGTGGAATCCAACTTCTGG
GACATCGTCCACACGGAAGAAGATGGCGCTATTCAGGGCCCTCACCACCG
TCACCACCTTCAAGTCGGCTGGGAAAGTAGTGAGGCTAGACTGTCGTATC
GTCACTTATCTTCCCGGTATCTATGTGTCTGTCTGGATGGCGCTAGCAAA
TGGGATGCAGGGCATTGTCTGCGTTATGTGCCATTCACACGTTTCGCCTG
ATGGACGACCGTGTGTAATGTAGGGCGCACTTTTTGGGGTTTGATCAACT
AATTTGAGAACGGAAAGTCATGCAGATTAGCTACTATACGATCCTTCATC
AAGATCTCTAAGGCCAGTTCCAAGAGTTCCTCGTAAGCCGCTGCGGTCTT
CGACGCCACCCAACTGGCCTCTGCATTTGCCTTATTCTCATGCGTTAGCT
ATTGCTACGCCCGCCATTTTTTTGGGGGTCGGAATCTAAGGCCGAAATTG
TGCGATGCAAAACGTCGCAGCAGGGCACATGCACAACATGTGTATAGACC
ATATAAAACTCAACTGTTTGTGGCCGATCATTCAGC
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protein sequence of jgi.p|Nanoce1779_2|634020

>mRNA_10485-protein ID=mRNA_10485-protein|Name=jgi.p|Nanoce1779_2|634020|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MASTECFFKNDFPLTEHVETKLYRPIAPLGETPLPLQEIQAGAVGFLSTG
KQQQTTKEDVSKLTAEARRSDSRYAHACTNCLSRHRRKQLHGDLRSDGNC
MGIYRDIIDNALDMMCVIPSNNRSQILYINKTAQYILQTEPAHLVESNFW
DIVHTEEDGAIQGPHHRHHLQVGWESSEARLSYRHLSSRYLCVCLDGASK
WDAGHCLRYVPFTRFA*
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mRNA from alignment at scaffold_52:60603..61741-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10485 ID=mRNA_10485|Name=jgi.p|Nanoce1779_2|634020|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp|location=Sequence derived from alignment at scaffold_52:60603..61741- (Nannochloropsis oceanica)
ATGGCGTCGACCGAGTGCTTTTTTAAGAACGACTTCCCGCTCACCGAGCA
TGTGGAGACCAAGCTCTACCGACCGATTGCACCGCTTGGCGAGACCCCCC
TGCCGCTGCAAGAGATCCAGGCGGGTGCAGTAGGTTTTTTGGTGAGACTG
TTGCCTGGCAGATGCTCCGAGATCATGGGAAAATACTTCCGGTGAGAGGC
ATGAGTGATATGTGCTTAGCGCTTGCAGCTTTGGTGTAGCCTCTTTTGAG
AACTCATTTTTCCTCTCCATTCGCTCCTTCTTCCTGTACAACAGAGCACA
GGGAAGCAGCAGCAAACTACGAAAGAGGACGTATCGAAATTAACGGCGGA
AGCAAGGCGGAGCGACTCAAGGTACGCGCACGCATGTACAAATTGCTTGT
CTCGCCATCGCCGCAAACAGCTACATGGTGACCTGCGCAGTGACGGGAAT
TGCATGGGAATATACAGGGATATTATCGACAATGCGCTGGACATGATGTG
TGTCATTCCATCAAACAATCGAAGCCAGATACTGTACATCAATAAGACCG
CTCAATACATCCTACAGACTGAGCCCGCGCATTTAGTGGAATCCAACTTC
TGGGACATCGTCCACACGGAAGAAGATGGCGCTATTCAGGGCCCTCACCA
CCGTCACCACCTTCAAGTCGGCTGGGAAAGTAGTGAGGCTAGACTGTCGT
ATCGTCACTTATCTTCCCGGTATCTATGTGTCTGTCTGGATGGCGCTAGC
AAATGGGATGCAGGGCATTGTCTGCGTTATGTGCCATTCACACGTTTCGC
CTGATGGACGACCGTGTGTAATGTAGGGCGCACTTTTTGGGGTTTGATCA
ACTAATTTGAGAACGGAAAGTCATGCAGATTAGCTACTATACGATCCTTC
ATCAAGATCTCTAAGGCCAGTTCCAAGAGTTCCTCGTAAGCCGCTGCGGT
CTTCGACGCCACCCAACTGGCCTCTGCATTTGCCTTATTCTCATGCGTTA
GCTATTGCTACGCCCGCCATTTTTTTGGGGGTCGGAATCTAAGGCCGAAA
TTGTGCGATGCAAAACGTCGCAGCAGGGCACATGCACAACATGTGTATAG
ACCATATAAAACTCAACTGTTTGTGGCCGATCATTCAGC
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Coding sequence (CDS) from alignment at scaffold_52:60603..61741-

>mRNA_10485 ID=mRNA_10485|Name=jgi.p|Nanoce1779_2|634020|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at scaffold_52:60603..61741- (Nannochloropsis oceanica)
AGCACAGGGAAGCAGCAGCAAACTACGAAAGAGGACGTATCGAAATTAAC
GGCGGAAGCAAGGCGGAGCGACTCAAGGTACGCGCACGCATGTACAAATT
GCTTGTCTCGCCATCGCCGCAAACAGCTACATGGTGACCTGCGCAGTGAC
GGGAATTGCATGGGAATATACAGGGATATTATCGACAATGCGCTGGACAT
GATGTGTGTCATTCCATCAAACAATCGAAGCCAGATACTGTACATCAATA
AGACCGCTCAATACATCCTACAGACTGAGCCCGCGCATTTAGTGGAATCC
AACTTCTGGGACATCGTCCACACGGAAGAAGATGGCGCTATTCAGGGCCC
TCACCACCGTCACCACCTTCAAGTCGGCTGGGAAAGTAGTGAGGCTAGAC
TGTCGTATCGTCACTTATCTTCCCGGTATCTATGTGTCTGTCTGGATGGC
GCTAGCAAATGGGATGCAGGGCATTGTCTGCGTTATGTGCCATTCACACG
TTTCGCCTGAATGGCGTCGACCGAGTGCTTTTTTAAGAACGACTTCCCGC
TCACCGAGCATGTGGAGACCAAGCTCTACCGACCGATTGCACCGCTTGGC
GAGACCCCCCTGCCGCTGCAAGAGATCCAGGCGGGTGCAGTAGGTTTTTT
GAGCACAGGGAAGCAGCAGCAAACTACGAAAGAGGACGTATCGAAATTAA
CGGCGGAAGCAAGGCGGAGCGACTCAAGGTACGCGCACGCATGTACAAAT
TGCTTGTCTCGCCATCGCCGCAAACAGCTACATGGTGACCTGCGCAGTGA
CGGGAATTGCATGGGAATATACAGGGATATTATCGACAATGCGCTGGACA
TGATGTGTGTCATTCCATCAAACAATCGAAGCCAGATACTGTACATCAAT
AAGACCGCTCAATACATCCTACAGACTGAGCCCGCGCATTTAGTGGAATC
CAACTTCTGGGACATCGTCCACACGGAAGAAGATGGCGCTATTCAGGGCC
CTCACCACCGTCACCACCTTCAAGTCGGCTGGGAAAGTAGTGAGGCTAGA
CTGTCGTATCGTCACTTATCTTCCCGGTATCTATGTGTCTGTCTGGATGG
CGCTAGCAAATGGGATGCAGGGCATTGTCTGCGTTATGTGCCATTCACAC
GTTTCGCCTGAATGGCGTCGACCGAGTGCTTTTTTAAGAACGACTTCCCG
CTCACCGAGCATGTGGAGACCAAGCTCTACCGACCGATTGCACCGCTTGG
CGAGACCCCCCTGCCGCTGCAAGAGATCCAGGCGGGTGCAGTAGGTTTTT
TG
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Synonyms
Publications