jgi.p|Nanoce1779_2|610736, mRNA_10484 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610736
Unique Name	mRNA_10484
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1870
Alignment location	scaffold_52:52112..55854 -

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Properties


Property Name	Value
TranscriptId	610822
Track	FilteredModels2
ProteinId	610736

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_52	supercontig	scaffold_52:52112..55854 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610736	gene_10484	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610736	mRNA_10484-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10484	CDS_10484	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_52:52112..55854-
coding sequence from alignment at scaffold_52:52112..55854-

mRNA sequence

>mRNA_10484 ID=mRNA_10484|Name=jgi.p|Nanoce1779_2|610736|organism=Nannochloropsis oceanica|type=mRNA|length=1870bp
CAGAAATTCTCCTCAATCAGACTTACGACCGAGAAACCTGGAAGCCTCAC
TTTGACTGGCTTTTACCCTATCTAGAGCATACAAATTATTTGAAATACAA
GGGCCTACCAATCATCCTAATTTACAAAGCGGACGATATTCCCGATTTGG
AACAAATGATAAGTCAGTGGAAAACGTGGGCGAGGAATGCAAATTTGACG
GGCCTCCACGTGATACAAATCAATGGTGTAGGCTGGAATGGATCGTCTTC
TTGGGAATTGCAGCCAGGAATGGATTCTCTGGTCGAATTCTTCCCAAATT
ACATTTCAGCGTCCGGCTCTACTATGAACAATCTTGTGAGCACCCAAAAA
AAGGCAGACAGTTACTTCTACGGCGCTTCCGCTGCCTTTGACAATTCTCC
TAGATACTCCGACCCTACCGCTGGTGCTACGATCTATCCATTTCATCCGT
CACATTTGTATTTCTGGCTCCGTCAAAATCTGGCCAGGACGGAGCCTGGT
GGATTTGTGTTTTTAAATGCATGGAATGAGTGGGGACAGGGGTCTGCCAT
TGAGCCAAGCATCCAATGGGGTAGGCGATGGCTTGAAGCCATCCAAAGAG
CTGTCTCCGATGAACAGCGAGGCCATGTATCAAAAACCACGCCTGACGGT
TATGTGAGCTCTGTGCCTTTGGAGGAGAACCCTGGTATGCCTGTAAGCCA
TAAGGCGACACAAGATAGAGTGTGTATTATCGTCCGCACCTATAAGATCC
ATGCAACAGGCATCTACAACATCCATCAAATGCTCAACACTTTGCTTGCT
TTGAACCACAAAAACTGGAGAGCTTTTATCGTCAATACAGATGTAACTCC
ATTTGAGGATCTGCACACTATCCTTGACCAATATGAACATAAAGGAAAGA
TTGAAATTTCTCCCCTAACTGCCACTAGGAGCTTTGCAGATGACCCTAAT
TCGGCCTATGATATGACAGATAGAGCCATAGAGCACCACTGTGGTTCTAG
CAAGGAGTTCAAATGGCTACTAGTCACTAACGGAGACAATTGGTACACTC
CCGATGCTTTGGATTTCCTTCCTAATAATGTCGATCTTGTCTTAATGAAT
TTTTATTCACGATACTCGATCTGGGGTGGGATTTCATCAACAAACACTCC
GCATGATCAGGCGTGTTGCGTAAGGCTTCAAAACTATCAATGCATGGTAG
CAGATGTCAAAATGGGTTACATTGATCTTGGCGCAGTGATATTTAATTAT
CAGAAATATCGTAAAGAGCACATCTATTTTTCAACATTTAATGAACAGTC
CGATACTCAATGTGGTCAGTTTGGCGGCTGCCACGATGGCCTCCTGATCG
AGTATTTGATAGAGAATAAATGGTCCTATCGTGGTCTTCCTGTTGATGTA
TGCACAATGTATCACAATTCAAACCCCAAAAGCTGCGAGCTTGTTGGTGG
GACATGGTTTGACACAATAAATAGGAGTGCAATGGGATGCTATTATGGGA
ATATACTACCCGTGCCGCTGGAATCTGTGAACTACCAGGCATATACGGCA
GCTCATGCAGCATGCGTGTGTTAATTTTACACTACCTGCGTCCCTGGAAA
CCGTGGATTATCAGGCATCAACTGTGGCATCCCATAAAGCTTCGTTTGGT
GATCTATATTTACAAACTATAGGAGTTATGTATATCTTTAAGCAAATATT
AGGGTACCTCACCTCGTTTTATACGACTCACTCCATGTCTTTCACGTTAA
AGTTATTTCTTTTTGCATAGCTAATAGGACTTCTTCAATACATCTCTTAT
TCCTCTTGTTTACAACCTGGACAAATAATCGTTTCTCTTGTCGTCTTGTT
GCTCCTACATGGACTATTCA

protein sequence of jgi.p|Nanoce1779_2|610736

>mRNA_10484-protein ID=mRNA_10484-protein|Name=jgi.p|Nanoce1779_2|610736|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MISQWKTWARNANLTGLHVIQINGVGWNGSSSWELQPGMDSLVEFFPNYI
SASGSTMNNLVSTQKKADSYFYGASAAFDNSPRYSDPTAGATIYPFHPSH
LYFWLRQNLARTEPGGFVFLNAWNEWGQGSAIEPSIQWGRRWLEAIQRAV
SDEQRGHVSKTTPDGYVSSVPLEENPGMPVSHKATQDRVCIIVRTYKIHA
TGIYNIHQMLNTLLALNHKNWRAFIVNTDVTPFEDLHTILDQYEHKGKIE
ISPLTATRSFADDPNSAYDMTDRAIEHHCGSSKEFKWLLVTNGDNWYTPD
ALDFLPNNVDLVLMNFYSRYSIWGGISSTNTPHDQACCVRLQNYQCMVAD
VKMGYIDLGAVIFNYQKYRKEHIYFSTFNEQSDTQCGQFGGCHDGLLIEY
LIENKWSYRGLPVDVCTMYHNSNPKSCELVGGTWFDTINRSAMGCYYGNI
LPVPLESVNYQAYTAAHAACVC*

mRNA from alignment at scaffold_52:52112..55854-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10484 ID=mRNA_10484|Name=jgi.p|Nanoce1779_2|610736|organism=Nannochloropsis oceanica|type=mRNA|length=3743bp|location=Sequence derived from alignment at scaffold_52:52112..55854- (Nannochloropsis oceanica)
CAGAAATTCTCCTCAATCAGACTTACGACCGAGAAACCTGGAAGCCTCAC
TTTGACTGGCTTTTACCCTATCTAGAGCATACAAATTATTTGAAATACAA
GGGCCTACCAATCATCCTAATTTACAAAGCGGACGATATTCCCGATTTGG
AACAAATGATAAGTCAGTGGAAAACGTGGGCGAGGAATGCAAATTTGACG
GGCCTCCACGTGATACAAATCAATGGTGTAGGCTGGAATGGATCGTCTTC
TTGGGAATTGCAGCCAGGAATGGATTCTCTGGTCGAATTCTTCCCAAATT
ACATTTCAGCGTCCGGCTCTACTATGAACAATCTTGTGAGCACCCAAAAA
AAGGCAGACAGTTACTTCTACGGCGCTTCCGCTGCCTTTGACAATTCTCC
TAGATACTCCGACCCTACCGCTGGTGCTACGATCTATCCATTTCATCCGT
CACATTTGTATTTCTGGCTCCGTCAAAATCTGGCCAGGACGGAGCCTGGT
GGATTTGTGTTTTTAAATGCATGGAATGAGTGGGGACAGGGGTCTGCCAT
TGAGCCAAGCATCCAATGGGGTAGGCGATGGCTTGAAGCCATCCAAAGAG
CTGTCTCCGATGAACAGCGAGGCCATGTATCAAAAACCACGCCTGACGGT
TATGTGAGCTCTGTGCCTTTGGAGGAGAACCCTGGTATGCCTGTAAGCCA
TAAGGCGACACAAGATAGAGTGTGTATTATCGTCCGCACCTATAAGATCC
ATGCAACAGGCATCTACAACATCCATCAAATGCTCAACACTTTGCTTGCT
TTGAACCACAAAAACTGGAGAGCTTTTATCGTCAATACAGATGTAACTCC
ATTTGAGGATCTGCACACTATCCTTGACCAATATGAACATAAAGGAAAGA
TTGAAATTTCTCCCCTAACTGCCACTAGGAGCTTTGCAGATGACCCTAAT
TCGGCCTATGATATGACAGATAGAGCCATAGAGCACCACTGTGGTTCTAG
CAAGGAGTTCAAATGGCTACTAGTCACTAACGGAGACAATTGGTACACTC
CCGATGCTTTGGATTTCCTTCCTAATAATGTCGATCTTGTCTTAATGAAT
TTTTATTCACGATACTCGATCTGGGGTGGGATTTCATCAACAAACACTCC
GCATGATCAGGCGTGTTGCGTAAGGCTTCAAAACTATCAATGCATGGTAG
CAGATGTCAAAATGGGTTACATTGATCTTGGCGCAGTGATATTTAATTAT
CAGAAATATCGTAAAGAGCACATCTATTTTTCAACATTTAATGAACAGTC
CGATACTCAATGTGGTCAGTTTGGCGGCTGCCACGATGGCCTCCTGATCG
AGTATTTGATAGAGAATAAATGGTCCTATCGTGGTCTTCCTGTTGATGTA
TGCACAATGTATCACAATTCAAACCCCAAAAGCTGCGAGCTTGTTGGTGG
GACATGGTTTGACACAATAAATAGGAGTGCAATGGGATGCTATTATGGGA
ATATACTACCCGTGCCGCTGGAATCTGTGAACTACCAGGCATATACGGCA
GCTCATGCAGCATGCGTGTGTTAATTTTACACTACCTGCGTCCCTGGAAA
CCGTGGATTATCAGGCATCAACTGTGGCATCCCATAAAGCTTCGTTTGGT
GATCTATATTTACAAACTATAGGAGTTATGTATATCTTTAAGCAAATATT
AGGGTACCTCACCTCGTTTTATACGACTCACTCCATGTCTTTCACGTTAA
AGTTATTTCTTTTTGCATAGCTAATAGGACTTCTTCAATACATCTCTTAT
TCCTCTTGTTTACAACCTGGACAAATAATCGTTTCTCTTGTCGTCTTGTT
CTCGCAATTTGAATAATACTTGTCGTGTCTTATGCCCGCTGTGGTAGTTC
TCGTTGTTTGGTTCTCTTCCCAAGATAAAGCACCGGGACAACGACATGAT
ATGGAAACATGTTGACGGATGCAAGATCAATGCCAACGTCGACAGGGGCC
GGGTACAGCGCCGGGTTAGAATCCAATAATTCGTCTTCCAGAAATCGGTC
TGTCCGATAAAATCAGGCTTGAATTTCATGTCTGTAAGCAAGCATCATCT
TCCCAAAATTTTCCCGCTTGTTTGCCAAATTGCCAATATGTTGCAATAAT
CCTGACTCGTGTGACCCCTCGCAATCAGACCTACGAAAATGTCATTGGAT
GGTGCCTGAACAGGAATGTCCGTGTAATTATGTTGTTAACTTCTCACTGT
CGCTCGCTCCAGGGAATCAACCCCTGGACAACATCAACTTCCTTCGTGTG
TCGTTTTCTTCTCACTTTGTACTCTATCATTTTGACGACGACATGACGGT
GCTCGAAACGGTGTGATATGATCCCATGAGGGTGCCGAGTTTCTAAGAGA
TGTGTCCAAACGCATTATCTATTTACCCGGTTCTTCTGGGGTAATAATTA
GTGCTAAGCATCGACATTGGCGTCTCCAATTTTGCCGCCTACCCTGGGGG
GCTCGAATGTTGAAATGAGACTGTCGTCCTTTCCTTACAAAAAGTAAACA
ATATAGGATATGAAATACAGTGCTTGACTGTTTCTGTCGCCAATATTGGA
TAGCTTGTCAATTTCCTCTAAACGTTTGGTGTTAAGATTGGCCACCACGT
CGGTTAGAATTTCATCGGAAGATTCCATGTATTGTTGATAGTCGTTTTGT
AGTTGCTGGGAATTTGGTTGCCCATTTTCGTTTGTGTGAGAATTTGTTGT
TATTACAGTAAACAGGAAAATACTTTTAGATGCCCTTGATCCCTAACCAA
ATAGTGCGTTATAAGAATCAATTATAATTAACATAATCCGTACGGCCTAT
ACAGAAAGTTATGTACCTTTTTTGCTCTTTTTACTTTTTTGGGGTTTTAA
TCACCATTTCGAGCCTTATCACCGGCAAGATGGCATCTACTTCTAACATA
ATAATAATCAATAAATAAGCCCGCCCCACATGACGCGGTAGATGCCGACA
TCAGTCCCACTCGTCGACGCGGGATGACCGGCAGCCAAAGGAGCGGCTTG
ATCAGAACGGGATGGCGTCATCGTCCCGCGAAAACGGCAGTGGTCTGATG
CCGGCTTCTACCGCGTCACGCGGGATGGGCTTATTTTGATGCTAACATTA
TGATAGAAGTAGATGCCATCATGCTGGTGACAAGGCTCGTGATGGTAGTT
AAAAGCCAAAAAAAGTTTAAAGTGCAAAAACGTACATAAGTTTCTGTATA
GTCCGTCCTCTGCTGGGAAATTCATGCTATCCGCGCACCCCTCTTTTCGA
TCTAAAATCTGTTTGAAGAGTGCAATCAGCGCCCTGAATAAACACACCGC
GTGCTTTTCGGATCATAAAGGAAAATGTACACCCTTTGACATGCTGGAAA
ATCATACTTGAACACCTCCTTTACTTTGAAAAAAAAACTCCCTCGACTGA
ATCGGATCTTTGTGTGTGATTTTTCGGCGCTTACAAACTCGGCCACCGAG
AAATTGGTTCTATTCCCATTTACGTGACCCCACAAGCATGTACATTTTAA
CATTACATTTTGACATGTATAATAATAATTATGTCCTATCCTTACATTAT
ATTAGCTGTAGCGCAATCATTTCCGATTTGTCTTTGGCGACTTCCCAAAA
CGCATTCAGCGGGGTCGAAAGTATTTGAAGATGAGTCCTTTGCTTTCTAG
AAAGGGCCTGATTTGATCCCATCGCTCCTACATGGACTATTCA

Coding sequence (CDS) from alignment at scaffold_52:52112..55854-

>mRNA_10484 ID=mRNA_10484|Name=jgi.p|Nanoce1779_2|610736|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at scaffold_52:52112..55854- (Nannochloropsis oceanica)
ATGATAAGTCAGTGGAAAACGTGGGCGAGGAATGCAAATTTGACGGGCCT
CCACGTGATACAAATCAATGGTGTAGGCTGGAATGGATCGTCTTCTTGGG
AATTGCAGCCAGGAATGGATTCTCTGGTCGAATTCTTCCCAAATTACATT
TCAGCGTCCGGCTCTACTATGAACAATCTTGTGAGCACCCAAAAAAAGGC
AGACAGTTACTTCTACGGCGCTTCCGCTGCCTTTGACAATTCTCCTAGAT
ACTCCGACCCTACCGCTGGTGCTACGATCTATCCATTTCATCCGTCACAT
TTGTATTTCTGGCTCCGTCAAAATCTGGCCAGGACGGAGCCTGGTGGATT
TGTGTTTTTAAATGCATGGAATGAGTGGGGACAGGGGTCTGCCATTGAGC
CAAGCATCCAATGGGGTAGGCGATGGCTTGAAGCCATCCAAAGAGCTGTC
TCCGATGAACAGCGAGGCCATGTATCAAAAACCACGCCTGACGGTTATGT
GAGCTCTGTGCCTTTGGAGGAGAACCCTGGTATGCCTGTAAGCCATAAGG
CGACACAAGATAGAGTGTGTATTATCGTCCGCACCTATAAGATCCATGCA
ACAGGCATCTACAACATCCATCAAATGCTCAACACTTTGCTTGCTTTGAA
CCACAAAAACTGGAGAGCTTTTATCGTCAATACAGATGTAACTCCATTTG
AGGATCTGCACACTATCCTTGACCAATATGAACATAAAGGAAAGATTGAA
ATTTCTCCCCTAACTGCCACTAGGAGCTTTGCAGATGACCCTAATTCGGC
CTATGATATGACAGATAGAGCCATAGAGCACCACTGTGGTTCTAGCAAGG
AGTTCAAATGGCTACTAGTCACTAACGGAGACAATTGGTACACTCCCGAT
GCTTTGGATTTCCTTCCTAATAATGTCGATCTTGTCTTAATGAATTTTTA
TTCACGATACTCGATCTGGGGTGGGATTTCATCAACAAACACTCCGCATG
ATCAGGCGTGTTGCGTAAGGCTTCAAAACTATCAATGCATGGTAGCAGAT
GTCAAAATGGGTTACATTGATCTTGGCGCAGTGATATTTAATTATCAGAA
ATATCGTAAAGAGCACATCTATTTTTCAACATTTAATGAACAGTCCGATA
CTCAATGTGGTCAGTTTGGCGGCTGCCACGATGGCCTCCTGATCGAGTAT
TTGATAGAGAATAAATGGTCCTATCGTGGTCTTCCTGTTGATGTATGCAC
AATGTATCACAATTCAAACCCCAAAAGCTGCGAGCTTGTTGGTGGGACAT
GGTTTGACACAATAAATAGGAGTGCAATGGGATGCTATTATGGGAATATA
CTACCCGTGCCGCTGGAATCTGTGAACTACCAGGCATATACGGCAGCTCA
TGCAGCATGCGTGTGTTAA

Synonyms

Publications