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Properties
| Property Name | Value |
|---|
| TranscriptId | 610818 |
| Track | FilteredModels2 |
| ProteinId | 610732 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_52 | supercontig | scaffold_52:49818..51828 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10483 ID=mRNA_10483|Name=jgi.p|Nanoce1779_2|610732|organism=Nannochloropsis oceanica|type=mRNA|length=1502bp
CAGACCAAAATTGCAGGAGAAAATGGACATTCTAAGTGACCGTAAGCCAA
GGCCCAGGTCAACTCAGCTTTTGCTGTCCCTATGGCAAATCATTGGTATA
TTCACATGCCTAATCACTTTGGTAGGCATATCGGATATCTTTCAAACGCA
GACACTGCTTGCCCAGAAAAATCTGCAAATGATCCAGCTGCTGGGAGTGA
CGAATGTAAAAAAATTATCGTCCTCTCCGATGCCCGCAGCATTCGGTAAC
CAGCTGCCCACGTGCGACTTTCACATGGGTGATATCGATCCAGCATGTCC
GCGATTCGTCAACATTCGATTTCGATGGTTAGAGCGGGCAGGGCTGGGAG
ACCGTTTCTTCCAGCTATTGGTCGGCCTAACATATGCACTTCATCTCAAT
GCTTTCCTAGTGAATGTGGACTCAGAAATGAGTACCAACTCGACGCACGG
CCCGTACGACTGGGTACCCAATTTCTTCAAAATAAATTATGTGAACTCGA
ACATAACGATGGACGCCATAAAAGATCGCTACAGCAATTTGACAGTTGTG
AAGCAAGTGGAGGAGGTAACATCAGAAGCATGAAATTTCTGCGCCCTAAA
CAATGTGTATTTATATATATAATGTATATGATTATGATCCTACCCCTAAA
CAAGTACGGCAGAAGCTATGAGGAAAGAATACAAGCTCTCGGGTCGCATT
GCAATACTGTCATTCAAATTGACAATGACGATTGCGATGGAGGACCGGAA
TGTTATTTCTCGCACAACCCGAAAATTTATGAGCACATGCATAACATTAT
GGCCTGCTGGTTTTTGCACACTGACCGGTCTAATCTACCTGCACTCATCT
TTGATTCGGGTTGGTATAATGTCGCTATTCATCTGCGCGTTGGTGATGTG
GTGCTGTTTGATGGCGACCGAGGCAAAGACTTCTTTACGAAGCTCAAAAG
CCAGCTCGACAAAGTGCTGATCTTCTCTCCGGTCCATTACTTTTTCTTTG
TGGAAGCGCCTTACGATGAATTAGTCAATGAGCCTGCAGTCCCCCCTACT
GGATTCGCCTTTCTGGCTGACATCTTTGAGGACAGAAGTCATGGAAATGA
GGGTACCTTTTCACAACGAAAGTCCTATATTAAACATATGGGTGTCAAAG
AGTCGCTATACCATTACATGAATGCGGACATGGTCATCGCCACTGGATCC
TCGTTTCCATTGGTTGCAGTTACGGTATCGTCTAAGGTACGTGCACGAAG
ATCTTGCTAATTCTGGTTCTCTAGTCGTTTCCCAATCTTACACATATTTC
TACTGTTTTCAGCCCGTAGTGCTATTCACCAAATCAAAAGAAGGGGGCTT
TTATCCCTCCCAGATGCGAGGAGATTATGCAATGATTGGAGATGACGGGG
CGATCACATCTCCCACGATTGCAGAATTGTCGGCACAAGCCCTGATGCGG
TTCCTAGAAGTGCACGAAAAAAGAGTGCCTTATGAGTAAAATTTTCATTT
TA back to topprotein sequence of jgi.p|Nanoce1779_2|610732 >mRNA_10483-protein ID=mRNA_10483-protein|Name=jgi.p|Nanoce1779_2|610732|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MSAIRQHSISMVRAGRAGRPFLPAIGRPNICTSSQCFPSECGLRNEYQLD
ARPVRLGTQFLQNKLCELEHNDGRHKRSLQQFDSCEASGGGNIRSMKFLR
PKQCVFIYIMYMIMILPLNKYGRSYEERIQALGSHCNTVIQIDNDDCDGG
PECYFSHNPKIYEHMHNIMACWFLHTDRSNLPALIFDSGWYNVAIHLRVG
DVVLFDGDRGKDFFTKLKSQLDKVLIFSPVHYFFFVEAPYDELVNEPAVP
PTGFAFLADIFEDRSHGNEGTFSQRKSYIKHMGVKESLYHYMNADMVIAT
GSSFPLVAVTVSSKVRARRSC* back to topmRNA from alignment at scaffold_52:49818..51828- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10483 ID=mRNA_10483|Name=jgi.p|Nanoce1779_2|610732|organism=Nannochloropsis oceanica|type=mRNA|length=2011bp|location=Sequence derived from alignment at scaffold_52:49818..51828- (Nannochloropsis oceanica)
CAGACCAAAATTGCAGGAGAAAATGGACATTCTAAGTGACCGTAAGCCAA
GGCCCAGGTCAACTCAGCTTTTGCTGTCCCTATGGCAAATCATTGGTATA
TTCACATGCCTAATCACTTTGGTAGGCATATCGGATATCTTTCAAGTAAG
TGGAATGCATAACAGAGTGACAACTAAGACTCACCAAACACTCATGCTAT
TTTGTGCCATCTTCTTCTCGGAATGACAGACGCAGACACTGCTTGCCCAG
AAAAATCTGCAAATGATCCAGCTGCTGGTAAGCCCTACGTGGTGCATATG
ATTGTCACCATCATAATGATTACATTATTATTCAAATCTCTTCTCCTTAG
GGAGTGACGAATGTAAAAAAATTATCGTCCTCTCCGATGCCCGCAGCATT
CGGTAACCAGCTGCCCACGTGCGACTTTCACATGGGTGATATCGATCCAG
CATGTCCGCGATTCGTCAACATTCGATTTCGTACGTGCTATTTCATCTAT
GCAGTCAAGTTCATTTTTGCTAATGCACGCCTTTGTATCGTTTATTTACC
TTATCAATGAGACAGGATGGTTAGAGCGGGCAGGGCTGGGAGACCGTTTC
TTCCAGCTATTGGTCGGCCTAACATATGCACTTCATCTCAATGGTACGAA
AAAATATTACGTTTGTTGCCCGCATAAGCAAGATATGTTGTAGAAGGCTA
ATTTCTTCCCTCAAAACCCACTTCACAGCTTTCCTAGTGAATGTGGACTC
AGAAATGAGTACCAACTCGACGCACGGCCCGTACGACTGGGTACCCAATT
TCTTCAAAATAAATTATGTGAACTCGAACATAACGATGGACGCCATAAAA
GATCGCTACAGCAATTTGACAGTTGTGAAGCAAGTGGAGGAGGTAACATC
AGAAGCATGAAATTTCTGCGCCCTAAACAATGTGTATTTATATATATAAT
GTATATGATTATGATCCTACCCCTAAACAAGTACGGCAGAAGCTATGAGG
AAAGAATACAAGCTCTCGGGTCGCATTGCAATACTGTCATTCAAATTGAC
AATGACGTGAGTAATGATGAGGAGACAAAGGACATGGGCTATAAAATAAA
CAAATACTTACTTACTTCACGTACAAATCGTATTTTTGATTTGTGAAAGG
ATTGCGATGGAGGACCGGAATGTTATTTCTCGCACAACCCGAAAATTTAT
GAGCACATGCATAACATTATGGCCTGCTGGTTTTTGCACACTGACCGGTC
TAATCTACCTGCACTCATCTTTGATTCGGGTTGGTATAATGTCGCTATTC
ATGTAAGTCATGACACAATATGTTTATGACAGCAGTTCCCCCCGATTTCC
CGCCTAATTAAAATTGTTATCAATTCCATTTTATATTCTAGCTGCGCGTT
GGTGATGTGGTGCTGTTTGATGGCGACCGAGGCAAAGACTTCTTTACGAA
GCTCAAAAGCCAGCTCGACAAAGTGCTGATCTTCTCTCCGGTCCATTACT
TTTTCTTTGTGGAAGCGCCTTACGATGAATTAGTCAATGAGCCTGCAGTC
CCCCCTACTGGATTCGCCTTTCTGGCTGACATCTTTGAGGACAGAAGTCA
TGGAAATGAGGGTACCTTTTCACAACGAAAGTCCTATATTAAACATATGG
GTGTCAAAGAGTCGCTATACCATTACATGAATGCGGACATGGTCATCGCC
ACTGGATCCTCGTTTCCATTGGTTGCAGTTACGGTATCGTCTAAGGTACG
TGCACGAAGATCTTGCTAATTCTGGTTCTCTAGTCGTTTCCCAATCTTAC
ACATATTTCTACTGTTTTCAGCCCGTAGTGCTATTCACCAAATCAAAAGA
AGGGGGCTTTTATCCCTCCCAGATGCGAGGAGATTATGCAATGATTGGAG
ATGACGGGGCGATCACATCTCCCACGATTGCAGAATTGTCGGCACAAGCC
CTGATGCGGTTCCTAGAAGTGCACGAAAAAAGAGTGCCTTATGAGTAAAA
TTTTCATTTTA back to topCoding sequence (CDS) from alignment at scaffold_52:49818..51828- >mRNA_10483 ID=mRNA_10483|Name=jgi.p|Nanoce1779_2|610732|organism=Nannochloropsis oceanica|type=CDS|length=4830bp|location=Sequence derived from alignment at scaffold_52:49818..51828- (Nannochloropsis oceanica)
CTGCGCGTTGGTGATGTGGTGCTGTTTGATGGCGACCGAGGCAAAGACTT
CTTTACGAAGCTCAAAAGCCAGCTCGACAAAGTGCTGATCTTCTCTCCGG
TCCATTACTTTTTCTTTGTGGAAGCGCCTTACGATGAATTAGTCAATGAG
CCTGCAGTCCCCCCTACTGGATTCGCCTTTCTGGCTGACATCTTTGAGGA
CAGAAGTCATGGAAATGAGGGTACCTTTTCACAACGAAAGTCCTATATTA
AACATATGGGTGTCAAAGAGTCGCTATACCATTACATGAATGCGGACATG
GTCATCGCCACTGGATCCTCGTTTCCATTGGTTGCAGTTACGGTATCGTC
TAAGGTACGTGCACGAAGATCTTGCTAAGATTGCGATGGAGGACCGGAAT
GTTATTTCTCGCACAACCCGAAAATTTATGAGCACATGCATAACATTATG
GCCTGCTGGTTTTTGCACACTGACCGGTCTAATCTACCTGCACTCATCTT
TGATTCGGGTTGGTATAATGTCGCTATTCATCTTTCCTAGTGAATGTGGA
CTCAGAAATGAGTACCAACTCGACGCACGGCCCGTACGACTGGGTACCCA
ATTTCTTCAAAATAAATTATGTGAACTCGAACATAACGATGGACGCCATA
AAAGATCGCTACAGCAATTTGACAGTTGTGAAGCAAGTGGAGGAGGTAAC
ATCAGAAGCATGAAATTTCTGCGCCCTAAACAATGTGTATTTATATATAT
AATGTATATGATTATGATCCTACCCCTAAACAAGTACGGCAGAAGCTATG
AGGAAAGAATACAAGCTCTCGGGTCGCATTGCAATACTGTCATTCAAATT
GACAATGACGATGGTTAGAGCGGGCAGGGCTGGGAGACCGTTTCTTCCAG
CTATTGGTCGGCCTAACATATGCACTTCATCTCAATGATGTCCGCGATTC
GTCAACATTCGATTTCCTGCGCGTTGGTGATGTGGTGCTGTTTGATGGCG
ACCGAGGCAAAGACTTCTTTACGAAGCTCAAAAGCCAGCTCGACAAAGTG
CTGATCTTCTCTCCGGTCCATTACTTTTTCTTTGTGGAAGCGCCTTACGA
TGAATTAGTCAATGAGCCTGCAGTCCCCCCTACTGGATTCGCCTTTCTGG
CTGACATCTTTGAGGACAGAAGTCATGGAAATGAGGGTACCTTTTCACAA
CGAAAGTCCTATATTAAACATATGGGTGTCAAAGAGTCGCTATACCATTA
CATGAATGCGGACATGGTCATCGCCACTGGATCCTCGTTTCCATTGGTTG
CAGTTACGGTATCGTCTAAGGTACGTGCACGAAGATCTTGCTAAGATTGC
GATGGAGGACCGGAATGTTATTTCTCGCACAACCCGAAAATTTATGAGCA
CATGCATAACATTATGGCCTGCTGGTTTTTGCACACTGACCGGTCTAATC
TACCTGCACTCATCTTTGATTCGGGTTGGTATAATGTCGCTATTCATCTT
TCCTAGTGAATGTGGACTCAGAAATGAGTACCAACTCGACGCACGGCCCG
TACGACTGGGTACCCAATTTCTTCAAAATAAATTATGTGAACTCGAACAT
AACGATGGACGCCATAAAAGATCGCTACAGCAATTTGACAGTTGTGAAGC
AAGTGGAGGAGGTAACATCAGAAGCATGAAATTTCTGCGCCCTAAACAAT
GTGTATTTATATATATAATGTATATGATTATGATCCTACCCCTAAACAAG
TACGGCAGAAGCTATGAGGAAAGAATACAAGCTCTCGGGTCGCATTGCAA
TACTGTCATTCAAATTGACAATGACGATGGTTAGAGCGGGCAGGGCTGGG
AGACCGTTTCTTCCAGCTATTGGTCGGCCTAACATATGCACTTCATCTCA
ATGATGTCCGCGATTCGTCAACATTCGATTTCCTGCGCGTTGGTGATGTG
GTGCTGTTTGATGGCGACCGAGGCAAAGACTTCTTTACGAAGCTCAAAAG
CCAGCTCGACAAAGTGCTGATCTTCTCTCCGGTCCATTACTTTTTCTTTG
TGGAAGCGCCTTACGATGAATTAGTCAATGAGCCTGCAGTCCCCCCTACT
GGATTCGCCTTTCTGGCTGACATCTTTGAGGACAGAAGTCATGGAAATGA
GGGTACCTTTTCACAACGAAAGTCCTATATTAAACATATGGGTGTCAAAG
AGTCGCTATACCATTACATGAATGCGGACATGGTCATCGCCACTGGATCC
TCGTTTCCATTGGTTGCAGTTACGGTATCGTCTAAGGTACGTGCACGAAG
ATCTTGCTAAGATTGCGATGGAGGACCGGAATGTTATTTCTCGCACAACC
CGAAAATTTATGAGCACATGCATAACATTATGGCCTGCTGGTTTTTGCAC
ACTGACCGGTCTAATCTACCTGCACTCATCTTTGATTCGGGTTGGTATAA
TGTCGCTATTCATCTTTCCTAGTGAATGTGGACTCAGAAATGAGTACCAA
CTCGACGCACGGCCCGTACGACTGGGTACCCAATTTCTTCAAAATAAATT
ATGTGAACTCGAACATAACGATGGACGCCATAAAAGATCGCTACAGCAAT
TTGACAGTTGTGAAGCAAGTGGAGGAGGTAACATCAGAAGCATGAAATTT
CTGCGCCCTAAACAATGTGTATTTATATATATAATGTATATGATTATGAT
CCTACCCCTAAACAAGTACGGCAGAAGCTATGAGGAAAGAATACAAGCTC
TCGGGTCGCATTGCAATACTGTCATTCAAATTGACAATGACGATGGTTAG
AGCGGGCAGGGCTGGGAGACCGTTTCTTCCAGCTATTGGTCGGCCTAACA
TATGCACTTCATCTCAATGATGTCCGCGATTCGTCAACATTCGATTTCCT
GCGCGTTGGTGATGTGGTGCTGTTTGATGGCGACCGAGGCAAAGACTTCT
TTACGAAGCTCAAAAGCCAGCTCGACAAAGTGCTGATCTTCTCTCCGGTC
CATTACTTTTTCTTTGTGGAAGCGCCTTACGATGAATTAGTCAATGAGCC
TGCAGTCCCCCCTACTGGATTCGCCTTTCTGGCTGACATCTTTGAGGACA
GAAGTCATGGAAATGAGGGTACCTTTTCACAACGAAAGTCCTATATTAAA
CATATGGGTGTCAAAGAGTCGCTATACCATTACATGAATGCGGACATGGT
CATCGCCACTGGATCCTCGTTTCCATTGGTTGCAGTTACGGTATCGTCTA
AGGTACGTGCACGAAGATCTTGCTAAGATTGCGATGGAGGACCGGAATGT
TATTTCTCGCACAACCCGAAAATTTATGAGCACATGCATAACATTATGGC
CTGCTGGTTTTTGCACACTGACCGGTCTAATCTACCTGCACTCATCTTTG
ATTCGGGTTGGTATAATGTCGCTATTCATCTTTCCTAGTGAATGTGGACT
CAGAAATGAGTACCAACTCGACGCACGGCCCGTACGACTGGGTACCCAAT
TTCTTCAAAATAAATTATGTGAACTCGAACATAACGATGGACGCCATAAA
AGATCGCTACAGCAATTTGACAGTTGTGAAGCAAGTGGAGGAGGTAACAT
CAGAAGCATGAAATTTCTGCGCCCTAAACAATGTGTATTTATATATATAA
TGTATATGATTATGATCCTACCCCTAAACAAGTACGGCAGAAGCTATGAG
GAAAGAATACAAGCTCTCGGGTCGCATTGCAATACTGTCATTCAAATTGA
CAATGACGATGGTTAGAGCGGGCAGGGCTGGGAGACCGTTTCTTCCAGCT
ATTGGTCGGCCTAACATATGCACTTCATCTCAATGATGTCCGCGATTCGT
CAACATTCGATTTCCTGCGCGTTGGTGATGTGGTGCTGTTTGATGGCGAC
CGAGGCAAAGACTTCTTTACGAAGCTCAAAAGCCAGCTCGACAAAGTGCT
GATCTTCTCTCCGGTCCATTACTTTTTCTTTGTGGAAGCGCCTTACGATG
AATTAGTCAATGAGCCTGCAGTCCCCCCTACTGGATTCGCCTTTCTGGCT
GACATCTTTGAGGACAGAAGTCATGGAAATGAGGGTACCTTTTCACAACG
AAAGTCCTATATTAAACATATGGGTGTCAAAGAGTCGCTATACCATTACA
TGAATGCGGACATGGTCATCGCCACTGGATCCTCGTTTCCATTGGTTGCA
GTTACGGTATCGTCTAAGGTACGTGCACGAAGATCTTGCTAAGATTGCGA
TGGAGGACCGGAATGTTATTTCTCGCACAACCCGAAAATTTATGAGCACA
TGCATAACATTATGGCCTGCTGGTTTTTGCACACTGACCGGTCTAATCTA
CCTGCACTCATCTTTGATTCGGGTTGGTATAATGTCGCTATTCATCTTTC
CTAGTGAATGTGGACTCAGAAATGAGTACCAACTCGACGCACGGCCCGTA
CGACTGGGTACCCAATTTCTTCAAAATAAATTATGTGAACTCGAACATAA
CGATGGACGCCATAAAAGATCGCTACAGCAATTTGACAGTTGTGAAGCAA
GTGGAGGAGGTAACATCAGAAGCATGAAATTTCTGCGCCCTAAACAATGT
GTATTTATATATATAATGTATATGATTATGATCCTACCCCTAAACAAGTA
CGGCAGAAGCTATGAGGAAAGAATACAAGCTCTCGGGTCGCATTGCAATA
CTGTCATTCAAATTGACAATGACGATGGTTAGAGCGGGCAGGGCTGGGAG
ACCGTTTCTTCCAGCTATTGGTCGGCCTAACATATGCACTTCATCTCAAT
GATGTCCGCGATTCGTCAACATTCGATTTC back to top
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