jgi.p|Nanoce1779_2|634017, mRNA_10482 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|634017
Unique NamemRNA_10482
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1414
Alignment locationscaffold_52:45956..47369 +

Link to JBrowse

Properties
Property NameValue
TranscriptId634103
TrackFilteredModels2
ProteinId634017
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:45956..47369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634017gene_10482Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634017mRNA_10482-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10482CDS_10482Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10482 ID=mRNA_10482|Name=jgi.p|Nanoce1779_2|634017|organism=Nannochloropsis oceanica|type=mRNA|length=1414bp
GGCAAAGTTAGAACTCAAGGAGCGGTGAGCCGCAACGGGACATCGGACGC
CAAGGCCCAAAGGTTGTCCTCGTTTGGTGAAACCACTGCCATCGACAATA
TTGTTGCCCTACAAAGTCACACGTGAGAGCTTAGTGATGACACCTTCTAT
ACGGTTTTCTCTCTTTCAAACACTCGCACTGATTGTATTACATACGCTGT
TTTTCCTCAGCTGGTTGAATGGCACGCATGTCCCTCCCACCAAATCGTAT
GAGGGAACACCTTCATCAATGGTCATATCATCCGAGACTCAAGAAAAGGC
TCCAGCATACTATGAATTTGGCCACAATGAGGAAATTAACACAATTCAAG
CATTCTTGGAGGCGGAAGAATCGTACACGAACAAGCGCTTAAAGCGTGGA
TTGGCCATGGCCATGCAGCTCCTCGACAAGGACCTGCCTTGGGATCTAAG
AGACACAATCCTTAAAACTCTTCCTTCTTATACTAGAAAGTTGAAGGGGC
AAACAAAGGTGCTCCGGGAGGAAAAGTCCACTGATGCTGACTGGTGGTTT
GCAACGCCAGGCTTCTTGACATCCGATGGTACTGATCGTACCATAATCCG
AGTTGTCAATTATTACATAGACCTCGATGGATCCTACTATGTCTCGAATG
ACAAAATTAAAACAAAGATGTTGGTCGCGGAGACGAATGAATGGATCAGC
GTAACGGAATCGCCAGCCTTTGCAGTCGTTGCTGCGCAAGAAAAATTACA
TTACCCCGACGTGTACGAAACCGGTCTAGAAGACACACGCTTTCTAGTGC
ATGGTAAGAATGCTCCAATTTATACTCTCTCGTGCTCTTTTGAGTACACC
CGGATGAGCGGGCGAATCAATCAAGTACTTAGCATCCTTGATCCGAAGAC
ATGGACAATGACCATTCAAGACGTTATCAGAGGTCCCAATCCAGAGCACC
ACGAGAAAAACTGGGTATTTGCGGATGGCCTCCAAAATATTGTCTATGGA
TGGTATCCATCCATTCAGATCGGTGCAATCGACTTGGCTGCATCTGAATT
GGTCATACACACGTCGATAAAGTCTCCGAAATCATTTTCATCCATGCGAG
GATCAACGAACGGCGTCTTGCATGAGAACGAATGGTGGTTCGTGACACAT
GCCATGTTAGACCGCCCTGGGCAGCTACGTTACTACAGTCATCGCATTGT
GGTGCTTGACGAGCATTTGAAGTCCATCACGCGCTACAGTCTGCCCTTCA
CCTTCGAGCAAGACGCAGATACTGAGTATTGCTTGGGGTTCAAAGCAGAC
GATGCAGGTGTGACTTTTGGGTACAGTGTGCGAGACCGAACAAGTCGAAC
GCTGCACGTGGACTGGTCGGAGGTTCTGCTACTTTTTGACGACAAGGAGC
CCAAACAACGATAA
back to top

protein sequence of jgi.p|Nanoce1779_2|634017

>mRNA_10482-protein ID=mRNA_10482-protein|Name=jgi.p|Nanoce1779_2|634017|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MTPSIRFSLFQTLALIVLHTLFFLSWLNGTHVPPTKSYEGTPSSMVISSE
TQEKAPAYYEFGHNEEINTIQAFLEAEESYTNKRLKRGLAMAMQLLDKDL
PWDLRDTILKTLPSYTRKLKGQTKVLREEKSTDADWWFATPGFLTSDGTD
RTIIRVVNYYIDLDGSYYVSNDKIKTKMLVAETNEWISVTESPAFAVVAA
QEKLHYPDVYETGLEDTRFLVHGKNAPIYTLSCSFEYTRMSGRINQVLSI
LDPKTWTMTIQDVIRGPNPEHHEKNWVFADGLQNIVYGWYPSIQIGAIDL
AASELVIHTSIKSPKSFSSMRGSTNGVLHENEWWFVTHAMLDRPGQLRYY
SHRIVVLDEHLKSITRYSLPFTFEQDADTEYCLGFKADDAGVTFGYSVRD
RTSRTLHVDWSEVLLLFDDKEPKQR*
back to top

mRNA from alignment at scaffold_52:45956..47369+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10482 ID=mRNA_10482|Name=jgi.p|Nanoce1779_2|634017|organism=Nannochloropsis oceanica|type=mRNA|length=1414bp|location=Sequence derived from alignment at scaffold_52:45956..47369+ (Nannochloropsis oceanica)
GGCAAAGTTAGAACTCAAGGAGCGGTGAGCCGCAACGGGACATCGGACGC
CAAGGCCCAAAGGTTGTCCTCGTTTGGTGAAACCACTGCCATCGACAATA
TTGTTGCCCTACAAAGTCACACGTGAGAGCTTAGTGATGACACCTTCTAT
ACGGTTTTCTCTCTTTCAAACACTCGCACTGATTGTATTACATACGCTGT
TTTTCCTCAGCTGGTTGAATGGCACGCATGTCCCTCCCACCAAATCGTAT
GAGGGAACACCTTCATCAATGGTCATATCATCCGAGACTCAAGAAAAGGC
TCCAGCATACTATGAATTTGGCCACAATGAGGAAATTAACACAATTCAAG
CATTCTTGGAGGCGGAAGAATCGTACACGAACAAGCGCTTAAAGCGTGGA
TTGGCCATGGCCATGCAGCTCCTCGACAAGGACCTGCCTTGGGATCTAAG
AGACACAATCCTTAAAACTCTTCCTTCTTATACTAGAAAGTTGAAGGGGC
AAACAAAGGTGCTCCGGGAGGAAAAGTCCACTGATGCTGACTGGTGGTTT
GCAACGCCAGGCTTCTTGACATCCGATGGTACTGATCGTACCATAATCCG
AGTTGTCAATTATTACATAGACCTCGATGGATCCTACTATGTCTCGAATG
ACAAAATTAAAACAAAGATGTTGGTCGCGGAGACGAATGAATGGATCAGC
GTAACGGAATCGCCAGCCTTTGCAGTCGTTGCTGCGCAAGAAAAATTACA
TTACCCCGACGTGTACGAAACCGGTCTAGAAGACACACGCTTTCTAGTGC
ATGGTAAGAATGCTCCAATTTATACTCTCTCGTGCTCTTTTGAGTACACC
CGGATGAGCGGGCGAATCAATCAAGTACTTAGCATCCTTGATCCGAAGAC
ATGGACAATGACCATTCAAGACGTTATCAGAGGTCCCAATCCAGAGCACC
ACGAGAAAAACTGGGTATTTGCGGATGGCCTCCAAAATATTGTCTATGGA
TGGTATCCATCCATTCAGATCGGTGCAATCGACTTGGCTGCATCTGAATT
GGTCATACACACGTCGATAAAGTCTCCGAAATCATTTTCATCCATGCGAG
GATCAACGAACGGCGTCTTGCATGAGAACGAATGGTGGTTCGTGACACAT
GCCATGTTAGACCGCCCTGGGCAGCTACGTTACTACAGTCATCGCATTGT
GGTGCTTGACGAGCATTTGAAGTCCATCACGCGCTACAGTCTGCCCTTCA
CCTTCGAGCAAGACGCAGATACTGAGTATTGCTTGGGGTTCAAAGCAGAC
GATGCAGGTGTGACTTTTGGGTACAGTGTGCGAGACCGAACAAGTCGAAC
GCTGCACGTGGACTGGTCGGAGGTTCTGCTACTTTTTGACGACAAGGAGC
CCAAACAACGATAA
back to top

Coding sequence (CDS) from alignment at scaffold_52:45956..47369+

>mRNA_10482 ID=mRNA_10482|Name=jgi.p|Nanoce1779_2|634017|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_52:45956..47369+ (Nannochloropsis oceanica)
ATGACACCTTCTATACGGTTTTCTCTCTTTCAAACACTCGCACTGATTGT
ATTACATACGCTGTTTTTCCTCAGCTGGTTGAATGGCACGCATGTCCCTC
CCACCAAATCGTATGAGGGAACACCTTCATCAATGGTCATATCATCCGAG
ACTCAAGAAAAGGCTCCAGCATACTATGAATTTGGCCACAATGAGGAAAT
TAACACAATTCAAGCATTCTTGGAGGCGGAAGAATCGTACACGAACAAGC
GCTTAAAGCGTGGATTGGCCATGGCCATGCAGCTCCTCGACAAGGACCTG
CCTTGGGATCTAAGAGACACAATCCTTAAAACTCTTCCTTCTTATACTAG
AAAGTTGAAGGGGCAAACAAAGGTGCTCCGGGAGGAAAAGTCCACTGATG
CTGACTGGTGGTTTGCAACGCCAGGCTTCTTGACATCCGATGGTACTGAT
CGTACCATAATCCGAGTTGTCAATTATTACATAGACCTCGATGGATCCTA
CTATGTCTCGAATGACAAAATTAAAACAAAGATGTTGGTCGCGGAGACGA
ATGAATGGATCAGCGTAACGGAATCGCCAGCCTTTGCAGTCGTTGCTGCG
CAAGAAAAATTACATTACCCCGACGTGTACGAAACCGGTCTAGAAGACAC
ACGCTTTCTAGTGCATGGTAAGAATGCTCCAATTTATACTCTCTCGTGCT
CTTTTGAGTACACCCGGATGAGCGGGCGAATCAATCAAGTACTTAGCATC
CTTGATCCGAAGACATGGACAATGACCATTCAAGACGTTATCAGAGGTCC
CAATCCAGAGCACCACGAGAAAAACTGGGTATTTGCGGATGGCCTCCAAA
ATATTGTCTATGGATGGTATCCATCCATTCAGATCGGTGCAATCGACTTG
GCTGCATCTGAATTGGTCATACACACGTCGATAAAGTCTCCGAAATCATT
TTCATCCATGCGAGGATCAACGAACGGCGTCTTGCATGAGAACGAATGGT
GGTTCGTGACACATGCCATGTTAGACCGCCCTGGGCAGCTACGTTACTAC
AGTCATCGCATTGTGGTGCTTGACGAGCATTTGAAGTCCATCACGCGCTA
CAGTCTGCCCTTCACCTTCGAGCAAGACGCAGATACTGAGTATTGCTTGG
GGTTCAAAGCAGACGATGCAGGTGTGACTTTTGGGTACAGTGTGCGAGAC
CGAACAAGTCGAACGCTGCACGTGGACTGGTCGGAGGTTCTGCTACTTTT
TGACGACAAGGAGCCCAAACAACGATAA
back to top
Synonyms
Publications