jgi.p|Nanoce1779_2|662356, mRNA_10480 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|662356
Unique NamemRNA_10480
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2224
Alignment locationscaffold_52:31645..33868 -

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Properties
Property NameValue
TranscriptId662442
TrackFilteredModels2
ProteinId662356
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:31645..33868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|662356gene_10480Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|662356mRNA_10480-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10480CDS_10480Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10480 ID=mRNA_10480|Name=jgi.p|Nanoce1779_2|662356|organism=Nannochloropsis oceanica|type=mRNA|length=2224bp
ATAGCCTTCAACCCCCGCGCCAGGAGCACGGAGATAAATGTCGCATGGAA
TTTATAAACGGGTGCACTCTTCTTTGAGGACCAAATTACAGCATCGCAGA
GCGAGTGCATATCTCGCCATTTTGTTCTTGGCTTCAAGCGGCATTTACGT
CGCCGTTGTGCACAGGATATTGCACACTTTAACTTTGCAGCTAAAAAAGC
AAAATTCGTTTTCCAGAGGGACATTCTTGGGATATCACCGCGAAAGCTTA
CCACTAAGGCGCGTCGATAAATTGCTGGACTCGGCAGACACGTCCTACGC
AAGCCGCGATTATCAAAAGGCAGTGCTTCTATACCACGAAGCTCAAAAGG
CAGCCATAAAACTTAATTACCAGAAATATTTGTATCGCAGCCTTCATAAA
TTATCACAATGCCATATGGCACTCAATAATACAAAGGCAGCCATACACTA
TGCCCAAAAGGCCTTTGAGGTCCATCCCCGAGCAGAGCCTATGTTCCACG
TGGCCGAGTTTCTCGATGGTCTAGATCAAGAAGGACTATCAAGTCAAACC
TTCTACTACGCTGCCTGTTGCGCAGCTTCTAGACACCCATTTAGCGTTTC
AGAACATAAGATTCTCGACAAATTACGCGTGATAGATGAATCAAAGCTGT
GGCCGCGGCAATTCCCTGATGAATATCTGGCCAAGCTTGCATCGCTTCAG
GCCATCATGGACGATGACGAAGTGTCTACGGAGACCCATGAGCAGGTGCA
TTGGGAGATGACTACAAATACACGAGCAATTCTGGGTTGTTCTCAAGAGC
TATTTCGCAGGGAAGGTATATTCCATAACAACGGTACCTTTTACTACGCA
ACTCCATCTCTGATCCGTCGCCGAGAAAAATACGATAGTGCCGATAGCAG
CAACAGGCTGATTCCCAAGCAGGATACTAATATGGAGTACCTTATCTTGG
TCAGGCTCCTCAACTACCGCATCGACCACGAGGGTAGATGGTATAAGGAC
TTTCTGCCTAAGGCCCAGGATTCGGGCATATTACGGAGTGCATCAGCCTT
GTTTTTGAACGCCACAGATGAAGGTACTATCCTTCGGGTACATGATGGCT
GTTACGAAAAATCTCCAACACGTTTCTTGGGAACAGAGGATCCGAAGTTG
CTGGCGATGATCGATGGCACGATTCGCATAATTTGGACAAGTTGGGAATA
TGCCAAGACTGCAGGGGAAGGATCCCGACTGGCAATGGGCATTTTGGATA
TAGATTCTCTGACGATTCACTTAGATCACGTGTTTCCCAGCCCTTTTGAC
CATTTCAATGAGAAAAATTGGGTGGCCTTCCAACGGCCAGGCTGTAATGA
GCTTTACTTTATCTACGAGTGGCACCCCTTGAGAATAGGAGCTCTGGACA
AGCTTAGTGGCACCATTAATTTCAACATGGTGATTTCTACGCCTCGAAGC
TTTCGTCACCTACGAGGGTCTTCTAATGGGGTTGTCTACAAAAATGACAT
TTGGCTGCTCACGCACGGGACCTCGTGGTATAGAGGACCAGGCCCTACGT
ATTACCACCGCATAGTGGTATTGGATTCGGAAACGTTTGAGGTGAAGCGC
TGCACGTACCCTTTCAAATTGGAATCTACCGAGGCCCCCATTGAATTTTC
GCTTGGACTCGATATTGATCGTCTAGGAAATGTGACAATTGCTTACAGTG
TATTCGATGGATCCGCAGTTTTGCGTCGAATCCCCATCTGGAAGCTTGAG
GCACTGATGGTGACATCTCAGGAAATATATCTAGAGAGTTAGGTTTAGCT
TTTTTGATCGAAGCACATATCCACGTGTTTTTCCCAATCGAGGCCAAGGG
TTGCCTTGTATATACATACCGAGGGTTCCCCCCTTTCTGTGATTATTTTG
GGATGTTCTTGAGGCAAAAAAGCAATGAGGGGGGAAACATATTAAAGGGT
ATCTTTCCATTTCTACGACCGCTTGTGGCTGGAAAGGTGAGATTGATACA
GTCAGTGAGCGAAGGCATGGTATGGACAGGGTGCCCTTATGAGTTACAGG
CCTTTGTAGTATGTTGCGCCGAGCTGCATTTGTGGACTGGCGGTCGAAGT
GGGGGCATGTGCTTTGTCAGTCGCATACCGTTAAAGGATGCCGGCGATCA
TTGTTGTGTATTTGTAGGGAATGGCGGCGGTGTATGTTTTAGGCGTCGTC
TTGATCCCTGGGACTCTCTTAGGC
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protein sequence of jgi.p|Nanoce1779_2|662356

>mRNA_10480-protein ID=mRNA_10480-protein|Name=jgi.p|Nanoce1779_2|662356|organism=Nannochloropsis oceanica|type=polypeptide|length=585bp
MSHGIYKRVHSSLRTKLQHRRASAYLAILFLASSGIYVAVVHRILHTLTL
QLKKQNSFSRGTFLGYHRESLPLRRVDKLLDSADTSYASRDYQKAVLLYH
EAQKAAIKLNYQKYLYRSLHKLSQCHMALNNTKAAIHYAQKAFEVHPRAE
PMFHVAEFLDGLDQEGLSSQTFYYAACCAASRHPFSVSEHKILDKLRVID
ESKLWPRQFPDEYLAKLASLQAIMDDDEVSTETHEQVHWEMTTNTRAILG
CSQELFRREGIFHNNGTFYYATPSLIRRREKYDSADSSNRLIPKQDTNME
YLILVRLLNYRIDHEGRWYKDFLPKAQDSGILRSASALFLNATDEGTILR
VHDGCYEKSPTRFLGTEDPKLLAMIDGTIRIIWTSWEYAKTAGEGSRLAM
GILDIDSLTIHLDHVFPSPFDHFNEKNWVAFQRPGCNELYFIYEWHPLRI
GALDKLSGTINFNMVISTPRSFRHLRGSSNGVVYKNDIWLLTHGTSWYRG
PGPTYYHRIVVLDSETFEVKRCTYPFKLESTEAPIEFSLGLDIDRLGNVT
IAYSVFDGSAVLRRIPIWKLEALMVTSQEIYLES*
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mRNA from alignment at scaffold_52:31645..33868-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10480 ID=mRNA_10480|Name=jgi.p|Nanoce1779_2|662356|organism=Nannochloropsis oceanica|type=mRNA|length=2224bp|location=Sequence derived from alignment at scaffold_52:31645..33868- (Nannochloropsis oceanica)
ATAGCCTTCAACCCCCGCGCCAGGAGCACGGAGATAAATGTCGCATGGAA
TTTATAAACGGGTGCACTCTTCTTTGAGGACCAAATTACAGCATCGCAGA
GCGAGTGCATATCTCGCCATTTTGTTCTTGGCTTCAAGCGGCATTTACGT
CGCCGTTGTGCACAGGATATTGCACACTTTAACTTTGCAGCTAAAAAAGC
AAAATTCGTTTTCCAGAGGGACATTCTTGGGATATCACCGCGAAAGCTTA
CCACTAAGGCGCGTCGATAAATTGCTGGACTCGGCAGACACGTCCTACGC
AAGCCGCGATTATCAAAAGGCAGTGCTTCTATACCACGAAGCTCAAAAGG
CAGCCATAAAACTTAATTACCAGAAATATTTGTATCGCAGCCTTCATAAA
TTATCACAATGCCATATGGCACTCAATAATACAAAGGCAGCCATACACTA
TGCCCAAAAGGCCTTTGAGGTCCATCCCCGAGCAGAGCCTATGTTCCACG
TGGCCGAGTTTCTCGATGGTCTAGATCAAGAAGGACTATCAAGTCAAACC
TTCTACTACGCTGCCTGTTGCGCAGCTTCTAGACACCCATTTAGCGTTTC
AGAACATAAGATTCTCGACAAATTACGCGTGATAGATGAATCAAAGCTGT
GGCCGCGGCAATTCCCTGATGAATATCTGGCCAAGCTTGCATCGCTTCAG
GCCATCATGGACGATGACGAAGTGTCTACGGAGACCCATGAGCAGGTGCA
TTGGGAGATGACTACAAATACACGAGCAATTCTGGGTTGTTCTCAAGAGC
TATTTCGCAGGGAAGGTATATTCCATAACAACGGTACCTTTTACTACGCA
ACTCCATCTCTGATCCGTCGCCGAGAAAAATACGATAGTGCCGATAGCAG
CAACAGGCTGATTCCCAAGCAGGATACTAATATGGAGTACCTTATCTTGG
TCAGGCTCCTCAACTACCGCATCGACCACGAGGGTAGATGGTATAAGGAC
TTTCTGCCTAAGGCCCAGGATTCGGGCATATTACGGAGTGCATCAGCCTT
GTTTTTGAACGCCACAGATGAAGGTACTATCCTTCGGGTACATGATGGCT
GTTACGAAAAATCTCCAACACGTTTCTTGGGAACAGAGGATCCGAAGTTG
CTGGCGATGATCGATGGCACGATTCGCATAATTTGGACAAGTTGGGAATA
TGCCAAGACTGCAGGGGAAGGATCCCGACTGGCAATGGGCATTTTGGATA
TAGATTCTCTGACGATTCACTTAGATCACGTGTTTCCCAGCCCTTTTGAC
CATTTCAATGAGAAAAATTGGGTGGCCTTCCAACGGCCAGGCTGTAATGA
GCTTTACTTTATCTACGAGTGGCACCCCTTGAGAATAGGAGCTCTGGACA
AGCTTAGTGGCACCATTAATTTCAACATGGTGATTTCTACGCCTCGAAGC
TTTCGTCACCTACGAGGGTCTTCTAATGGGGTTGTCTACAAAAATGACAT
TTGGCTGCTCACGCACGGGACCTCGTGGTATAGAGGACCAGGCCCTACGT
ATTACCACCGCATAGTGGTATTGGATTCGGAAACGTTTGAGGTGAAGCGC
TGCACGTACCCTTTCAAATTGGAATCTACCGAGGCCCCCATTGAATTTTC
GCTTGGACTCGATATTGATCGTCTAGGAAATGTGACAATTGCTTACAGTG
TATTCGATGGATCCGCAGTTTTGCGTCGAATCCCCATCTGGAAGCTTGAG
GCACTGATGGTGACATCTCAGGAAATATATCTAGAGAGTTAGGTTTAGCT
TTTTTGATCGAAGCACATATCCACGTGTTTTTCCCAATCGAGGCCAAGGG
TTGCCTTGTATATACATACCGAGGGTTCCCCCCTTTCTGTGATTATTTTG
GGATGTTCTTGAGGCAAAAAAGCAATGAGGGGGGAAACATATTAAAGGGT
ATCTTTCCATTTCTACGACCGCTTGTGGCTGGAAAGGTGAGATTGATACA
GTCAGTGAGCGAAGGCATGGTATGGACAGGGTGCCCTTATGAGTTACAGG
CCTTTGTAGTATGTTGCGCCGAGCTGCATTTGTGGACTGGCGGTCGAAGT
GGGGGCATGTGCTTTGTCAGTCGCATACCGTTAAAGGATGCCGGCGATCA
TTGTTGTGTATTTGTAGGGAATGGCGGCGGTGTATGTTTTAGGCGTCGTC
TTGATCCCTGGGACTCTCTTAGGC
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Coding sequence (CDS) from alignment at scaffold_52:31645..33868-

>mRNA_10480 ID=mRNA_10480|Name=jgi.p|Nanoce1779_2|662356|organism=Nannochloropsis oceanica|type=CDS|length=1755bp|location=Sequence derived from alignment at scaffold_52:31645..33868- (Nannochloropsis oceanica)
ATGTCGCATGGAATTTATAAACGGGTGCACTCTTCTTTGAGGACCAAATT
ACAGCATCGCAGAGCGAGTGCATATCTCGCCATTTTGTTCTTGGCTTCAA
GCGGCATTTACGTCGCCGTTGTGCACAGGATATTGCACACTTTAACTTTG
CAGCTAAAAAAGCAAAATTCGTTTTCCAGAGGGACATTCTTGGGATATCA
CCGCGAAAGCTTACCACTAAGGCGCGTCGATAAATTGCTGGACTCGGCAG
ACACGTCCTACGCAAGCCGCGATTATCAAAAGGCAGTGCTTCTATACCAC
GAAGCTCAAAAGGCAGCCATAAAACTTAATTACCAGAAATATTTGTATCG
CAGCCTTCATAAATTATCACAATGCCATATGGCACTCAATAATACAAAGG
CAGCCATACACTATGCCCAAAAGGCCTTTGAGGTCCATCCCCGAGCAGAG
CCTATGTTCCACGTGGCCGAGTTTCTCGATGGTCTAGATCAAGAAGGACT
ATCAAGTCAAACCTTCTACTACGCTGCCTGTTGCGCAGCTTCTAGACACC
CATTTAGCGTTTCAGAACATAAGATTCTCGACAAATTACGCGTGATAGAT
GAATCAAAGCTGTGGCCGCGGCAATTCCCTGATGAATATCTGGCCAAGCT
TGCATCGCTTCAGGCCATCATGGACGATGACGAAGTGTCTACGGAGACCC
ATGAGCAGGTGCATTGGGAGATGACTACAAATACACGAGCAATTCTGGGT
TGTTCTCAAGAGCTATTTCGCAGGGAAGGTATATTCCATAACAACGGTAC
CTTTTACTACGCAACTCCATCTCTGATCCGTCGCCGAGAAAAATACGATA
GTGCCGATAGCAGCAACAGGCTGATTCCCAAGCAGGATACTAATATGGAG
TACCTTATCTTGGTCAGGCTCCTCAACTACCGCATCGACCACGAGGGTAG
ATGGTATAAGGACTTTCTGCCTAAGGCCCAGGATTCGGGCATATTACGGA
GTGCATCAGCCTTGTTTTTGAACGCCACAGATGAAGGTACTATCCTTCGG
GTACATGATGGCTGTTACGAAAAATCTCCAACACGTTTCTTGGGAACAGA
GGATCCGAAGTTGCTGGCGATGATCGATGGCACGATTCGCATAATTTGGA
CAAGTTGGGAATATGCCAAGACTGCAGGGGAAGGATCCCGACTGGCAATG
GGCATTTTGGATATAGATTCTCTGACGATTCACTTAGATCACGTGTTTCC
CAGCCCTTTTGACCATTTCAATGAGAAAAATTGGGTGGCCTTCCAACGGC
CAGGCTGTAATGAGCTTTACTTTATCTACGAGTGGCACCCCTTGAGAATA
GGAGCTCTGGACAAGCTTAGTGGCACCATTAATTTCAACATGGTGATTTC
TACGCCTCGAAGCTTTCGTCACCTACGAGGGTCTTCTAATGGGGTTGTCT
ACAAAAATGACATTTGGCTGCTCACGCACGGGACCTCGTGGTATAGAGGA
CCAGGCCCTACGTATTACCACCGCATAGTGGTATTGGATTCGGAAACGTT
TGAGGTGAAGCGCTGCACGTACCCTTTCAAATTGGAATCTACCGAGGCCC
CCATTGAATTTTCGCTTGGACTCGATATTGATCGTCTAGGAAATGTGACA
ATTGCTTACAGTGTATTCGATGGATCCGCAGTTTTGCGTCGAATCCCCAT
CTGGAAGCTTGAGGCACTGATGGTGACATCTCAGGAAATATATCTAGAGA
GTTAG
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Synonyms
Publications