jgi.p|Nanoce1779_2|562892, mRNA_1048 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|562892
Unique NamemRNA_1048
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length675
Alignment locationscaffold_2:1093469..1094143 -

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Properties
Property NameValue
TranscriptId562978
TrackFilteredModels2
ProteinId562892
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1093469..1094143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562892gene_1048Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1048CDS_1048Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562892mRNA_1048-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1048 ID=mRNA_1048|Name=jgi.p|Nanoce1779_2|562892|organism=Nannochloropsis oceanica|type=mRNA|length=675bp
ATGACCCTATTTGCCATCGGTTGTGGAATGCTGAAGGTAAAACGGGCTGA
GCTCCCACGCGAGGTGATAGCGCCTTGGTCGCACGTGATGGGAGGCGGGT
CCGCGGTCATTTTAGCGTTCTTGGTGAATCTGGCGAGTCAGTCTGATTAT
CTGGTATATTTTTGTTTGTACCTCTCGGGGGTTGGCGTCTTGATTTTTGT
TATGTTTCAACGCGTACGGCTACTCAAGCTCTTAATCTACTTTGCGCCGC
CGTCCCTCGCGTCAGTGCTGAAGAAGGAGTTGAAATCGCTGCGTTCGGAG
GAGATGGTATTCTTTTGCAAAGACCCCAAAGACATGTATGTCCTAAATAA
AGCGTTGTTGTACGTACGTGCCAATGAAAGTACGGTAGACTCTGTCCTTG
TCGTGCATTGCCGGGGAAAAGAGGAGCACGGCGGTATCGAGGAAGGGAAG
GAAAAAGAGTGGGAGAGGGAGGGGGCTAGGACCATAAAAATGATGGATCA
GATGTATCCCGCGATATGCGTGAGCTTTTTGCAGGTCGATCAAGCATTCA
GCGCCGAAGTGGTGGAGGTACTTTCGAACTTGTTGGATATCGGAAAGGAG
AAGATGATGATTTCGTGCCCGGACTGGAAGCACCGAATAGATCGGTTGAA
GGGAGTAAGGGTGATCACGCACTAA
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protein sequence of jgi.p|Nanoce1779_2|562892

>mRNA_1048-protein ID=mRNA_1048-protein|Name=jgi.p|Nanoce1779_2|562892|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MTLFAIGCGMLKVKRAELPREVIAPWSHVMGGGSAVILAFLVNLASQSDY
LVYFCLYLSGVGVLIFVMFQRVRLLKLLIYFAPPSLASVLKKELKSLRSE
EMVFFCKDPKDMYVLNKALLYVRANESTVDSVLVVHCRGKEEHGGIEEGK
EKEWEREGARTIKMMDQMYPAICVSFLQVDQAFSAEVVEVLSNLLDIGKE
KMMISCPDWKHRIDRLKGVRVITH*
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mRNA from alignment at scaffold_2:1093469..1094143-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1048 ID=mRNA_1048|Name=jgi.p|Nanoce1779_2|562892|organism=Nannochloropsis oceanica|type=mRNA|length=675bp|location=Sequence derived from alignment at scaffold_2:1093469..1094143- (Nannochloropsis oceanica)
ATGACCCTATTTGCCATCGGTTGTGGAATGCTGAAGGTAAAACGGGCTGA
GCTCCCACGCGAGGTGATAGCGCCTTGGTCGCACGTGATGGGAGGCGGGT
CCGCGGTCATTTTAGCGTTCTTGGTGAATCTGGCGAGTCAGTCTGATTAT
CTGGTATATTTTTGTTTGTACCTCTCGGGGGTTGGCGTCTTGATTTTTGT
TATGTTTCAACGCGTACGGCTACTCAAGCTCTTAATCTACTTTGCGCCGC
CGTCCCTCGCGTCAGTGCTGAAGAAGGAGTTGAAATCGCTGCGTTCGGAG
GAGATGGTATTCTTTTGCAAAGACCCCAAAGACATGTATGTCCTAAATAA
AGCGTTGTTGTACGTACGTGCCAATGAAAGTACGGTAGACTCTGTCCTTG
TCGTGCATTGCCGGGGAAAAGAGGAGCACGGCGGTATCGAGGAAGGGAAG
GAAAAAGAGTGGGAGAGGGAGGGGGCTAGGACCATAAAAATGATGGATCA
GATGTATCCCGCGATATGCGTGAGCTTTTTGCAGGTCGATCAAGCATTCA
GCGCCGAAGTGGTGGAGGTACTTTCGAACTTGTTGGATATCGGAAAGGAG
AAGATGATGATTTCGTGCCCGGACTGGAAGCACCGAATAGATCGGTTGAA
GGGAGTAAGGGTGATCACGCACTAA
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Coding sequence (CDS) from alignment at scaffold_2:1093469..1094143-

>mRNA_1048 ID=mRNA_1048|Name=jgi.p|Nanoce1779_2|562892|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_2:1093469..1094143- (Nannochloropsis oceanica)
ATGACCCTATTTGCCATCGGTTGTGGAATGCTGAAGGTAAAACGGGCTGA
GCTCCCACGCGAGGTGATAGCGCCTTGGTCGCACGTGATGGGAGGCGGGT
CCGCGGTCATTTTAGCGTTCTTGGTGAATCTGGCGAGTCAGTCTGATTAT
CTGGTATATTTTTGTTTGTACCTCTCGGGGGTTGGCGTCTTGATTTTTGT
TATGTTTCAACGCGTACGGCTACTCAAGCTCTTAATCTACTTTGCGCCGC
CGTCCCTCGCGTCAGTGCTGAAGAAGGAGTTGAAATCGCTGCGTTCGGAG
GAGATGGTATTCTTTTGCAAAGACCCCAAAGACATGTATGTCCTAAATAA
AGCGTTGTTGTACGTACGTGCCAATGAAAGTACGGTAGACTCTGTCCTTG
TCGTGCATTGCCGGGGAAAAGAGGAGCACGGCGGTATCGAGGAAGGGAAG
GAAAAAGAGTGGGAGAGGGAGGGGGCTAGGACCATAAAAATGATGGATCA
GATGTATCCCGCGATATGCGTGAGCTTTTTGCAGGTCGATCAAGCATTCA
GCGCCGAAGTGGTGGAGGTACTTTCGAACTTGTTGGATATCGGAAAGGAG
AAGATGATGATTTCGTGCCCGGACTGGAAGCACCGAATAGATCGGTTGAA
GGGAGTAAGGGTGATCACGCACTAA
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Synonyms
Publications