jgi.p|Nanoce1779_2|610721, mRNA_10477 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610721
Unique NamemRNA_10477
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length213
Alignment locationscaffold_52:23136..24359 +

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Properties
Property NameValue
TranscriptId610807
TrackFilteredModels2
ProteinId610721
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:23136..24359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610721gene_10477Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610721mRNA_10477-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10477CDS_10477Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10477 ID=mRNA_10477|Name=jgi.p|Nanoce1779_2|610721|organism=Nannochloropsis oceanica|type=mRNA|length=213bp
ATGCTCATATCTCTCTGTTCTCTTACCGGAAGGCAGTTCGCGCTGACTCT
GGTCCCGCCGCTGCTCAGCAGTGGGGCCAAAAACCCCGATTGGAGAATGA
GAACACGTATTAGAGAATGTCATTGGGCAAGCAGAAGCTCAGATAGATTG
AGATTTGTGACACTGCATGCATGGGCAGTTGGATTGGAGATGGGAGCTGG
GAGATGGCTCTAA
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protein sequence of jgi.p|Nanoce1779_2|610721

>mRNA_10477-protein ID=mRNA_10477-protein|Name=jgi.p|Nanoce1779_2|610721|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MLISLCSLTGRQFALTLVPPLLSSGAKNPDWRMRTRIRECHWASRSSDRL
RFVTLHAWAVGLEMGAGRWL*
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mRNA from alignment at scaffold_52:23136..24359+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10477 ID=mRNA_10477|Name=jgi.p|Nanoce1779_2|610721|organism=Nannochloropsis oceanica|type=mRNA|length=1224bp|location=Sequence derived from alignment at scaffold_52:23136..24359+ (Nannochloropsis oceanica)
ATGCTCATATCTCTCTGTTCTCTTACCGGAAGGTACTTTCCCATGATCTT
GGAGTATCTGCCAGGCAGCCGTCCCACCGAAACACCCATCACACCAGCTC
GAATCTCCTGCAGCAGCAGAGGGGTCTCGCTCAGCGGTGCAATCGGTGGG
TAGATCTTGGCTTCCACGTGCTCGGTGGTGAGCGGTAACTCGTTCATAGA
AAAGCACTTGGTCGACGCCATCATATGCTGCTTTTCAATTGGCTGCATTT
GGTATTGTAGGAAGTAATGAAGCTGCAGTGGTAGGTGACTTTGGTTGAAA
TACTGCTGGAGCTGGTGGTGCTGCTGTGCTAGAAAAGACGGCGAGGCCTG
GGAGAGTACCTTGGTCATCTTATCATCCAGGATAGCATGCTGATGAATGG
CCGACGGGTGAAACTGTTGCTGGTACTGGGTCAGAAAGGATTGCAATGAT
TTGTCCACCACCTGCTTCTGAAGTTCTAAGACTGTGTGTGTGGGGGGGGG
GTATGTATGTATGTTGAAGTGAGCGTGCGCATCTACGAATAGATGCGCTG
CATGTAGCTGGTGCGCATGTAGACGCTTGTGTGTGACTCGGGGCGGGATA
TACCTGTGTATATATTCTTTTTGCTTACAATGTCGTAGAAGCATTTGTCA
GCATGCTGGTGGCCAAACACATAATGGCGACGGGAAAATGAAAAATGAAA
AGATGAAAAAGAAACATTATGCGGAGTGTGTCGTGCACGTACGCTTCCAT
GTACAAGGCCACGTACAAGTCGGGGGATGGTGTACGTAGTTAATCAGGAG
AAGGTATACATAGAGGCATAGAGGAGGCAAGTTGGGGGATAATGGGCACC
AATCGCCTTCCAAAAACGTACCGTGGTTCGCTGCTACGAGAGAAGAGGCC
CAAGACGAGGGATAACACGGCGTGGAGACGGGAGGCGGGTCAGTAGCGGC
AGAGAGTGTTGCTAGGCTGCACAGGGCTGCCGCGCCGCCGTGTGCCTTAT
TCTCGTCTAAGTCAAGAGACAACGAATCCTTCATTCCGTGGAGGCAGTTC
GCGCTGACTCTGGTCCCGCCGCTGCTCAGCAGTGGGGCCAAAAACCCCGA
TTGGAGAATGAGAACACGTATTAGAGAATGTCATTGGGCAAGCAGAAGCT
CAGATAGATTGAGATTTGTGACACTGCATGCATGGGCAGTTGGATTGGAG
ATGGGAGCTGGGAGATGGCTCTAA
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Coding sequence (CDS) from alignment at scaffold_52:23136..24359+

>mRNA_10477 ID=mRNA_10477|Name=jgi.p|Nanoce1779_2|610721|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_52:23136..24359+ (Nannochloropsis oceanica)
ATGCTCATATCTCTCTGTTCTCTTACCGGAAGGCAGTTCGCGCTGACTCT
GGTCCCGCCGCTGCTCAGCAGTGGGGCCAAAAACCCCGATTGGAGAATGA
GAACACGTATTAGAGAATGTCATTGGGCAAGCAGAAGCTCAGATAGATTG
AGATTTGTGACACTGCATGCATGGGCAGTTGGATTGGAGATGGGAGCTGG
GAGATGGCTCTAAATGCTCATATCTCTCTGTTCTCTTACCGGAAGGCAGT
TCGCGCTGACTCTGGTCCCGCCGCTGCTCAGCAGTGGGGCCAAAAACCCC
GATTGGAGAATGAGAACACGTATTAGAGAATGTCATTGGGCAAGCAGAAG
CTCAGATAGATTGAGATTTGTGACACTGCATGCATGGGCAGTTGGATTGG
AGATGGGAGCTGGGAGATGGCTCTAA
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Synonyms
Publications