jgi.p|Nanoce1779_2|610718, mRNA_10476 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610718
Unique NamemRNA_10476
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1422
Alignment locationscaffold_52:20005..21808 +

Link to JBrowse

Properties
Property NameValue
TranscriptId610804
TrackFilteredModels2
ProteinId610718
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:20005..21808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610718gene_10476Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610718mRNA_10476-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10476CDS_10476Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10476 ID=mRNA_10476|Name=jgi.p|Nanoce1779_2|610718|organism=Nannochloropsis oceanica|type=mRNA|length=1422bp
AGCATCTCCCTTAACAGCGCCGTACTGGCCCCCCTGCATGACCAACACAT
ATACGTCCCGCGCTACCAGACAAATACTCGGGCTAGTTCTTATACAATTC
ACCGGAAAAGGACTCAAGCATGCTGCCGTAAAGGGGATGATGGCTATCAA
TGCGAGACGTTTTACGTCTCTGATGTTTCCGTTGTTGCTTCTGCTTCTAA
TAACATGGTTGGATAATGGACCAGCATTGTGGGACGGTGAATTGCAGGCT
GTTCGCGATGACAGCATAAGTCAAAGTACCCTGAGATCACAGGAACCTTT
AGAACCATTCGACGACCTCGTTAGGATCTTGCAGCAGCGCGAATTAGTGG
ATGGAAAACAAAATCTACTCGACGTCCTGATCAACCCCTTTTCTCCCATT
CTTTTGTGCAACCATCATTTTGGAGTCACCGATTTGCCGCGTTACGCTCC
AGTCACTTTGCATCCTGTCGATATGGACAATGCCCGAGATATTGCACACA
TGGATATCGTATGCTGCCAGACCGACCAGCTGCAAAATTTCATCCAGACC
ATCATCCCACTCTTGGAAAATAGGATCATTTTGATTACTCACAAATGGTA
CAAACCCGCGGTAGCCAGGTCTAACTGGACTGACAGTGTCCGACAGAATC
ACATTGTGGCACACTGGTTCTCACAGAACCCAATCTATGAGAGCGACGAT
ACCTATTCGGCTTTTCCCTATGGAATCAAAGAAATCAATTTGGAGACTTT
TGCAGAAGCCCTGTTGAAATATTCCGGAATCAAAGATACCCTCGTACAGC
ATCTGTACCTTTCTCAGACTAATGTTGAGCGAGAGATTTTGCCCAAAAGA
CCGAAGGTCGATCCTGATGTATATTATACGGAGGTTTCAAGGGCCAAATT
TCTTCTTTCCCCACCAGGTGATCGACCTGACGCTACCGTCACTGGGAAGC
CATCGGACTGGGAACCATGCCTATTTCCAGTCTCAACAAGACGCTCTATC
AGCCCCTTTTCGGGCCTAGCATGAAATTCGTTCCCTCTGTTGCAGATATG
CTCCCGCTACTGTGTAATTCCTCCGACACCGAATTGATTTACAGAGAGAC
CAGTCGCCATTTTGTCTCCTTCGCCTACTGGAGGTCACGGGTTCGTCAAA
TGCAATTGTGGTTAATGGCGGCCGATGAGTAGTACTGGCATATCATCTTT
CATTCCTGAAGGGCTTGAAAACAGGTATATTGAAAGTCATTCAAGCACAA
AGTGGAGAGACTTCTTTTCTCTGCTTGCCAATGTGAGGGATGGGGGGAAA
TTGGGCCGCCAACTCTTGCGCATAATATACAAGAAACTTTCCCTTGCCGC
GTCTCGCCCTTGACGACGAGTCTAATCACAGGCTACCCTCCAGCAGCTGA
GCGTTTTGTGCAAGTCGAAATT
back to top

protein sequence of jgi.p|Nanoce1779_2|610718

>mRNA_10476-protein ID=mRNA_10476-protein|Name=jgi.p|Nanoce1779_2|610718|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MTNTYTSRATRQILGLVLIQFTGKGLKHAAVKGMMAINARRFTSLMFPLL
LLLLITWLDNGPALWDGELQAVRDDSISQSTLRSQEPLEPFDDLVRILQQ
RELVDGKQNLLDVLINPFSPILLCNHHFGVTDLPRYAPVTLHPVDMDNAR
DIAHMDIVCCQTDQLQNFIQTIIPLLENRIILITHKWYKPAVARSNWTDS
VRQNHIVAHWFSQNPIYESDDTYSAFPYGIKEINLETFAEALLKYSGIKD
TLVQHLYLSQTNVEREILPKRPKVDPDVYYTEVSRAKFLLSPPGDRPDAT
VTGKPSDWEPCLFPVSTRRSISPFSGLA*
back to top

mRNA from alignment at scaffold_52:20005..21808+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10476 ID=mRNA_10476|Name=jgi.p|Nanoce1779_2|610718|organism=Nannochloropsis oceanica|type=mRNA|length=1804bp|location=Sequence derived from alignment at scaffold_52:20005..21808+ (Nannochloropsis oceanica)
AGCATCTCCCTTAACAGCGCCGTACTGGCCCCCCTGCATGACCAACACAT
ATACGTCCCGCGCTACCAGACAAATACTCGGGCTAGTTCTTATACAATTC
ACCGGTGTGTACATGTCCCTCTCTTATTCTTTTGACACCTTCTTTCTTCT
GGGCATCAACTACAGCCGTGCACGGACTTGGTAGACCTGACAGGAGTGCG
CCTCCTTGTAATTGATCTTTTTCTACCGCAGCATGTCACTGGTGGGGTCA
CCAGCGCTTTCTCACGCACACTGACCTTGTCGTGGTAGGACGTGAGGCCG
ATTTTGGGAAGTGCGTCCTTGACGCCTCTATTCCTCATCATCGTACCCCC
AAAGTGCCCAAATCCCGGCCCATTTTGTGGCGCCAAGGCTTCTTTCACTT
TTTTCAACTCCTACATCCTCTCACATCACGCGCCCGTTCTGGGTTGGGGC
TTTTCTCATATAAAATTGTACGTATTCCTTATACAGGAAAAGGACTCAAG
CATGCTGCCGTAAAGGGGATGATGGCTATCAATGCGAGACGTTTTACGTC
TCTGATGTTTCCGTTGTTGCTTCTGCTTCTAATAACATGGTTGGATAATG
GACCAGCATTGTGGGACGGTGAATTGCAGGCTGTTCGCGATGACAGCATA
AGTCAAAGTACCCTGAGATCACAGGAACCTTTAGAACCATTCGACGACCT
CGTTAGGATCTTGCAGCAGCGCGAATTAGTGGATGGAAAACAAAATCTAC
TCGACGTCCTGATCAACCCCTTTTCTCCCATTCTTTTGTGCAACCATCAT
TTTGGAGTCACCGATTTGCCGCGTTACGCTCCAGTCACTTTGCATCCTGT
CGATATGGACAATGCCCGAGATATTGCACACATGGATATCGTATGCTGCC
AGACCGACCAGCTGCAAAATTTCATCCAGACCATCATCCCACTCTTGGAA
AATAGGATCATTTTGATTACTCACAAATGGTACAAACCCGCGGTAGCCAG
GTCTAACTGGACTGACAGTGTCCGACAGAATCACATTGTGGCACACTGGT
TCTCACAGAACCCAATCTATGAGAGCGACGATACCTATTCGGCTTTTCCC
TATGGAATCAAAGAAATCAATTTGGAGACTTTTGCAGAAGCCCTGTTGAA
ATATTCCGGAATCAAAGATACCCTCGTACAGCATCTGTACCTTTCTCAGA
CTAATGTTGAGCGAGAGATTTTGCCCAAAAGACCGAAGGTCGATCCTGAT
GTATATTATACGGAGGTTTCAAGGGCCAAATTTCTTCTTTCCCCACCAGG
TGATCGACCTGACGCTACCGTCACTGGGAAGCCATCGGACTGGGAACCAT
GCCTATTTCCAGTCTCAACAAGACGCTCTATCAGCCCCTTTTCGGGCCTA
GCATGAAATTCGTTCCCTCTGTTGCAGATATGCTCCCGCTACTGTGTAAT
TCCTCCGACACCGAATTGATTTACAGAGAGACCAGTCGCCATTTTGTCTC
CTTCGCCTACTGGAGGTCACGGGTTCGTCAAATGCAATTGTGGTTAATGG
CGGCCGATGAGTAGTACTGGCATATCATCTTTCATTCCTGAAGGGCTTGA
AAACAGGTATATTGAAAGTCATTCAAGCACAAAGTGGAGAGACTTCTTTT
CTCTGCTTGCCAATGTGAGGGATGGGGGGAAATTGGGCCGCCAACTCTTG
CGCATAATATACAAGAAACTTTCCCTTGCCGCGTCTCGCCCTTGACGACG
AGTCTAATCACAGGCTACCCTCCAGCAGCTGAGCGTTTTGTGCAAGTCGA
AATT
back to top

Coding sequence (CDS) from alignment at scaffold_52:20005..21808+

>mRNA_10476 ID=mRNA_10476|Name=jgi.p|Nanoce1779_2|610718|organism=Nannochloropsis oceanica|type=CDS|length=1974bp|location=Sequence derived from alignment at scaffold_52:20005..21808+ (Nannochloropsis oceanica)
ATGACCAACACATATACGTCCCGCGCTACCAGACAAATACTCGGGCTAGT
TCTTATACAATTCACCGGAAAAGGACTCAAGCATGCTGCCGTAAAGGGGA
TGATGGCTATCAATGCGAGACGTTTTACGTCTCTGATGTTTCCGTTGTTG
CTTCTGCTTCTAATAACATGGTTGGATAATGGACCAGCATTGTGGGACGG
TGAATTGCAGGCTGTTCGCGATGACAGCATAAGTCAAAGTACCCTGAGAT
CACAGGAACCTTTAGAACCATTCGACGACCTCGTTAGGATCTTGCAGCAG
CGCGAATTAGTGGATGGAAAACAAAATCTACTCGACGTCCTGATCAACCC
CTTTTCTCCCATTCTTTTGTGCAACCATCATTTTGGAGTCACCGATTTGC
CGCGTTACGCTCCAGTCACTTTGCATCCTGTCGATATGGACAATGCCCGA
GATATTGCACACATGGATATCGTATGCTGCCAGACCGACCAGCTGCAAAA
TTTCATCCAGACCATCATCCCACTCTTGGAAAATAGGATCATTTTGATTA
CTCACAAATGGTACAAACCCGCGGTAGCCAGGTCTAACTGGACTGACAGT
GTCCGACAGAATCACATTGTGGCACACTGGTTCTCACAGAACCCAATCTA
TGAGAGCGACGATACCTATTCGGCTTTTCCCTATGGAATCAAAGAAATCA
ATTTGGAGACTTTTGCAGAAGCCCTGTTGAAATATTCCGGAATCAAAGAT
ACCCTCGTACAGCATCTGTACCTTTCTCAGACTAATGTTGAGCGAGAGAT
TTTGCCCAAAAGACCGAAGGTCGATCCTGATGTATATTATACGGAGGTTT
CAAGGGCCAAATTTCTTCTTTCCCCACCAGGTGATCGACCTGACGCTACC
GTCACTGGGAAGCCATCGGACTGGGAACCATGCCTATTTCCAGTCTCAAC
AAGACGCTCTATCAGCCCCTTTTCGGGCCTAGCATGAATGACCAACACAT
ATACGTCCCGCGCTACCAGACAAATACTCGGGCTAGTTCTTATACAATTC
ACCGGAAAAGGACTCAAGCATGCTGCCGTAAAGGGGATGATGGCTATCAA
TGCGAGACGTTTTACGTCTCTGATGTTTCCGTTGTTGCTTCTGCTTCTAA
TAACATGGTTGGATAATGGACCAGCATTGTGGGACGGTGAATTGCAGGCT
GTTCGCGATGACAGCATAAGTCAAAGTACCCTGAGATCACAGGAACCTTT
AGAACCATTCGACGACCTCGTTAGGATCTTGCAGCAGCGCGAATTAGTGG
ATGGAAAACAAAATCTACTCGACGTCCTGATCAACCCCTTTTCTCCCATT
CTTTTGTGCAACCATCATTTTGGAGTCACCGATTTGCCGCGTTACGCTCC
AGTCACTTTGCATCCTGTCGATATGGACAATGCCCGAGATATTGCACACA
TGGATATCGTATGCTGCCAGACCGACCAGCTGCAAAATTTCATCCAGACC
ATCATCCCACTCTTGGAAAATAGGATCATTTTGATTACTCACAAATGGTA
CAAACCCGCGGTAGCCAGGTCTAACTGGACTGACAGTGTCCGACAGAATC
ACATTGTGGCACACTGGTTCTCACAGAACCCAATCTATGAGAGCGACGAT
ACCTATTCGGCTTTTCCCTATGGAATCAAAGAAATCAATTTGGAGACTTT
TGCAGAAGCCCTGTTGAAATATTCCGGAATCAAAGATACCCTCGTACAGC
ATCTGTACCTTTCTCAGACTAATGTTGAGCGAGAGATTTTGCCCAAAAGA
CCGAAGGTCGATCCTGATGTATATTATACGGAGGTTTCAAGGGCCAAATT
TCTTCTTTCCCCACCAGGTGATCGACCTGACGCTACCGTCACTGGGAAGC
CATCGGACTGGGAACCATGCCTATTTCCAGTCTCAACAAGACGCTCTATC
AGCCCCTTTTCGGGCCTAGCATGA
back to top
Synonyms
Publications