jgi.p|Nanoce1779_2|610709, mRNA_10475 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610709
Unique NamemRNA_10475
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length475
Alignment locationscaffold_52:13839..14795 -

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Properties
Property NameValue
TranscriptId610795
TrackFilteredModels2
ProteinId610709
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:13839..14795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610709gene_10475Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610709mRNA_10475-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10475CDS_10475Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10475 ID=mRNA_10475|Name=jgi.p|Nanoce1779_2|610709|organism=Nannochloropsis oceanica|type=mRNA|length=475bp
GGAGGAGAAGGAGGAGGAGGAAGGAGAGAGAAAGGGAGGGAGGAAGAAGG
ATCTGGCATGGTCGTTGAAGACGGCGAGGAGATATGCCTAGAGGCAGGAA
CGAACGCCATGCCCTTCATCTGCGACATCGGCCCGGGGGAAATACTGCAC
TTTCCGTCCATGTGGTGGCACGCGGTTCTCAACCTGGAGGACTACAACGT
CTTCGTCTCCACCTTCACCCAGGAGTAGGACAAGGGAGGGAGGAAGGGAG
GGAGCGATAAAAAAGAGGGGCATCACACCAACGAAGCAATGAAGCGAGGG
AGGGGGAAAGGTGGGAGGGAGGGAGCATGAGGAGGTTGTTTGTCCATTTT
CAAATGTATACAAGGCTCGAAGAAAACGCGGGTATAATAATGAGAAAGAC
CTTGAGCAGATCGATGGTTGCGATGGAGAAACATGCTCATTTGGCTGGTG
AATCTATCTCAAACATGTATTCCAC
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protein sequence of jgi.p|Nanoce1779_2|610709

>mRNA_10475-protein ID=mRNA_10475-protein|Name=jgi.p|Nanoce1779_2|610709|organism=Nannochloropsis oceanica|type=polypeptide|length=57bp
MVVEDGEEICLEAGTNAMPFICDIGPGEILHFPSMWWHAVLNLEDYNVFV
STFTQE*
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mRNA from alignment at scaffold_52:13839..14795-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10475 ID=mRNA_10475|Name=jgi.p|Nanoce1779_2|610709|organism=Nannochloropsis oceanica|type=mRNA|length=957bp|location=Sequence derived from alignment at scaffold_52:13839..14795- (Nannochloropsis oceanica)
GGAGGAGAAGGAGGAGGAGGAAGGAGAGAGAAAGGGAGGGAGGAAGAAGG
ATCTGGCATGGTCGTTGAAGACGGCGAGGTACGGTAGAGGAAGGCAGGAG
AGTAGGGAGAGAGGGAAGGAGGGAGGAAGGGAGGGAAGGAAGGGAAAGAA
GGAGAGGGAGAGAGGAAGGGAGGGAGGGAGGGCGAAAGGCTGTTGTCAGA
AGCATGGGTAGATGGAAGCGGCCTCCACTTCCTTCCCTCCCTCCTTCACT
CTCCCCCTCCCTTTCTTCCCTCCTCTCTCCCTCCCTCCTGCTTTGGAAGT
AGTCTCATCTTACGAAGCAGCGCAGAATCATTCCCCTTCCCTCACTCCTT
CCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCGTAGGAGATATGCCTA
GAGGCAGGAACGAACGCCATGCCCTTCATCTGCGACATCGGCCCGGGGGA
AATACTGGTGAGGGAGCGATGTATCAAAGCAAAGCTGTCAATATGATCAG
AGGCTAGGCCATGGTGGTAATCAATCTCACCAAAGAGTCACATCAAATAC
GGCGTGGAATACACAAATCGAATCATTCCCCTCTTACCCCCACCCATCTT
CTCCTCCCTGCCTCTTTCCCCTTCCTCAGCACTTTCCGTCCATGTGGTGG
CACGCGGTTCTCAACCTGGAGGACTACAACGTCTTCGTCTCCACCTTCAC
CCAGGAGTAGGACAAGGGAGGGAGGAAGGGAGGGAGCGATAAAAAAGAGG
GGCATCACACCAACGAAGCAATGAAGCGAGGGAGGGGGAAAGGTGGGAGG
GAGGGAGCATGAGGAGGTTGTTTGTCCATTTTCAAATGTATACAAGGCTC
GAAGAAAACGCGGGTATAATAATGAGAAAGACCTTGAGCAGATCGATGGT
TGCGATGGAGAAACATGCTCATTTGGCTGGTGAATCTATCTCAAACATGT
ATTCCAC
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Coding sequence (CDS) from alignment at scaffold_52:13839..14795-

>mRNA_10475 ID=mRNA_10475|Name=jgi.p|Nanoce1779_2|610709|organism=Nannochloropsis oceanica|type=CDS|length=513bp|location=Sequence derived from alignment at scaffold_52:13839..14795- (Nannochloropsis oceanica)
CACTTTCCGTCCATGTGGTGGCACGCGGTTCTCAACCTGGAGGACTACAA
CGTCTTCGTCTCCACCTTCACCCAGGAGTAGGAGATATGCCTAGAGGCAG
GAACGAACGCCATGCCCTTCATCTGCGACATCGGCCCGGGGGAAATACTG
ATGGTCGTTGAAGACGGCGAGCACTTTCCGTCCATGTGGTGGCACGCGGT
TCTCAACCTGGAGGACTACAACGTCTTCGTCTCCACCTTCACCCAGGAGT
AGGAGATATGCCTAGAGGCAGGAACGAACGCCATGCCCTTCATCTGCGAC
ATCGGCCCGGGGGAAATACTGATGGTCGTTGAAGACGGCGAGCACTTTCC
GTCCATGTGGTGGCACGCGGTTCTCAACCTGGAGGACTACAACGTCTTCG
TCTCCACCTTCACCCAGGAGTAGGAGATATGCCTAGAGGCAGGAACGAAC
GCCATGCCCTTCATCTGCGACATCGGCCCGGGGGAAATACTGATGGTCGT
TGAAGACGGCGAG
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Synonyms
Publications