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Properties
| Property Name | Value |
|---|
| TranscriptId | 634099 |
| Track | FilteredModels2 |
| ProteinId | 634013 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_52 | supercontig | scaffold_52:7722..10527 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10474 ID=mRNA_10474|Name=jgi.p|Nanoce1779_2|634013|organism=Nannochloropsis oceanica|type=mRNA|length=2299bp
CAGTGTCACAAATCACAGTCTATCCGAGCTTCTGTTGGCCCAATGACATT
CGCTTATACGTGTTCGTATTCTCGAGAGGATATCGGGGCTTTTGGTCCCA
CTGCTGAGCAGCGGCGGGACCAAAGCCAGCGCGACTGCCTCCACGGAATG
AAGGATTCTGTCGACTTGGACGAGAAAAAGGCACATGGCGGCGCGGCAGC
CCTGTTCAGCCTAGCAACACTCTCTGCCGCTGCTGACCCGCTTCCCGTCT
CCACGCCGTGTTACCCCTCGTCTTGGGCCTCTTCTCTCGTAGCAGCGAAC
CATGAACTTCAGAAGCAGATGGTCGACAAATCATTGCAATCCTTTCTGAC
CCAGTACCAGCAACAGTCGGCCATTCACCAGCATGCTATCCTGGATGATA
AGATGACCAATGTACTCTCCCAGGCCACGCCGTCTTTTCTAGCACAGCAG
CACCACCAGCTCCAGCAGTATTTCAACCGAAGTCACCTACCACTGCAGCT
TCATTACTTCCTACAATGCCAAATGCAGCCAACTAAAAAGCAGCATATGA
TGGCGTCGACCAAGTGCTTTTCTATGAACGACTTACCGCTCACCACCGAG
CACGTGGAAGCCAAGATCTATCCACCGATTGCACCGCTGAGCGAGACCCC
TCTGCTGCTGCAGGAGATTCGAGCTGGTGTGATGGGTGTTTCGGTGGGAC
GACTATCGGGCAGATACTCCAAGATCATGGGAAAGTATCTTCCGAGCACA
GAGAAGCAGCGACGAGCAAGGAAAGAGGACCTGTCGGGATTAACGGCAGA
GGAGAAGGTGGAGCGACGCAAGGTTCGCGCACGCATGTACAATCGCTTGT
CTCGCTACCGGTGCAGCCGGCTGCATGGTGACCTGCACAAGGACGTGAGT
CGCATGGAAATGTACAAGAACATTGTTGAAGATGCGCCGGACATGATATG
TGTCATCTCCCCCGACATTCAGAGCCAGGTGCTGTACATCAACAAGACCG
CTCGATGCATCCTTCACGCTGAGCCCGCGCAGCTGGTGGGGTCCAGCTTC
TGGAATATTGTCCACCCGGAAGATAAGATGGCGCTGTTCAGGGCACTCAC
TGCCGTCTCCGCCTTCAAGTCGGTCGGGAAAGTGGAACGGCTACGCTGTC
GTGTTGTCACCGACAACCTCGGTATCTATGTATCTGTCCGGATGACGCTC
GCAAACGGGATGCAGGGCATTGTCTGCGTAATGTGCCACGAAGACCCTCT
GTCTACCGTTTCGCGCGTGTCGCCTGATGGACGAGTGTGTCTTATGTAGG
ACGCTCTATTTTTGGGTACCATGATTATCTGACGATGGCTTGTGGAGTAC
ATAAATTACTATCGCGGTGGACACGGCAGAGGGTGTCCCTTGACTTCTAA
GGCGACATGATGTGGCCTGATCCGTTACTCTCGGGGACAAGGGCATCCGA
CCGGAACGAGTGGAGAGGCAATGAAAACGATACATTTCCGCTTTATGCAG
TAGAATCAAATTAGCAGAAAGCTTTCAAAAGATTCTTCTTTCCCTTGTAG
ACCGTCTGCTGCGTCTTTCGCGCGACGTTGACGATTATGTAAACCGGGGA
AGGGGAGCCAGGAGGTCCTTTTCACGTGACAAGTGATGAAACATTTTGAA
AATACCGTTACTTTAAGTGGCCGCATTCATACAAGTAGCTATACATTGGA
TGAGGAAAAAGGTCACAAGTGCAAATATGGTCGATAAAAAAGAAGGGAAA
ATGTTTGATATGAGATGAATTTTGTTGAATTACGGAGATAGGAAGAAGAA
GACGTGGGGAGAGAGAGAGTGTGAGTCTGAGAGATAGATAGAGAGATAGC
GATAGAAAGATAGAGAGAAAAAGAGAGAGGAAAAAAGAGGGCTCGACGTG
CCAGGGAAATAATTTCATACATGCTGGTGCTGGTGAGATCAATGAGAATA
GTCTTCTTTGCATACTGAAAATGTACAAATGTTGGTATGGTTAGTGTGAT
ATATTATCAGAGGCGAGACTGATTTTTTGGGCCCGCCCTGTGCCCTGTTG
TTAGGAAGGGACCCTGAGATGAGGGTGAGGCACGACCGAAGGAATTGAAG
AAAAGAAGAAAGTTTCTCCAATGTTATGTTGTGTACGGATTTCCGAATGC
TCTTTCCCGATCCTCACTAGAATTTCTTGATCACACGTCGGCCGAGTCGC
ACTATGTTCTCGTTATCGTCATTTAAGGCTGCAGGCCTTCAAACGAGTTT
TGACGGACAGAGCCGAGCGATGATCTCTTGGCGCGTCGACATGACGGCG back to topprotein sequence of jgi.p|Nanoce1779_2|634013 >mRNA_10474-protein ID=mRNA_10474-protein|Name=jgi.p|Nanoce1779_2|634013|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MTFAYTCSYSREDIGAFGPTAEQRRDQSQRDCLHGMKDSVDLDEKKAHGG
AAALFSLATLSAAADPLPVSTPCYPSSWASSLVAANHELQKQMVDKSLQS
FLTQYQQQSAIHQHAILDDKMTNVLSQATPSFLAQQHHQLQQYFNRSHLP
LQLHYFLQCQMQPTKKQHMMASTKCFSMNDLPLTTEHVEAKIYPPIAPLS
ETPLLLQEIRAGVMGVSVGRLSGRYSKIMGKYLPSTEKQRRARKEDLSGL
TAEEKVERRKVRARMYNRLSRYRCSRLHGDLHKDVSRMEMYKNIVEDAPD
MICVISPDIQSQVLYINKTARCILHAEPAQLVGSSFWNIVHPEDKMALFR
ALTAVSAFKSVGKVERLRCRVVTDNLGIYVSVRMTLANGMQGIVCVMCHE
DPLSTVSRVSPDGRVCLM* back to topmRNA from alignment at scaffold_52:7722..10527- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10474 ID=mRNA_10474|Name=jgi.p|Nanoce1779_2|634013|organism=Nannochloropsis oceanica|type=mRNA|length=2806bp|location=Sequence derived from alignment at scaffold_52:7722..10527- (Nannochloropsis oceanica)
CAGTGTCACAAATCACAGTCTATCCGAGCTTCTGTTGGCCCAATGACATT
CGCTTATACGTGTTCGTATTCTCGAGAGGATATCGGGGCTTTTGGTCCCA
CTGCTGAGCAGCGGCGGGACCAAAGCCAGCGCGACTGCCTCCACGGAATG
AAGGATTCTGTCGACTTGGACGAGAAAAAGGCACATGGCGGCGCGGCAGC
CCTGTTCAGCCTAGCAACACTCTCTGCCGCTGCTGACCCGCTTCCCGTCT
CCACGCCGTGTTACCCCTCGTCTTGGGCCTCTTCTCTCGTAGCAGCGAAC
CATGGTACGTTTTTGGAAGGCGATTGGTGCCCATTATTCCCCAACTTGCC
TCCTCTATGCCTCGTATGTACACATTCTCCTGATCTGTCTGCTACATACA
CCATCCCCCGACTTGTACGTGGCCTTGTACATGGAAGCGTACGTGTACGA
CACACTCCGCATGATGTTTCTTTTTCATCTTTTCATTTTTCATCTTCCCG
TCGCCATTATGTGTTTGGCCACCAGCATTCTGACAAATGCTTCTACGACA
TTGTAAGCAAAAAGAATATATACACAGGTATATCCCGCCCCGAGTCACAC
AAAAGCATCTACATGCGCACCAGCTACATACAAGGCATCTATTCGTAGGC
GCGCACGCTCACTTCAACATACATACATACCCCCCCCCCTCACACACAAC
CTTAGAACTTCAGAAGCAGATGGTCGACAAATCATTGCAATCCTTTCTGA
CCCAGTACCAGCAACAGTCGGCCATTCACCAGCATGCTATCCTGGATGAT
AAGATGACCAATGTACTCTCCCAGGCCACGCCGTCTTTTCTAGCACAGCA
GCACCACCAGCTCCAGCAGTATTTCAACCGAAGTCACCTACCACTGCAGC
TTCATTACTTCCTACAATGCCAAATGCAGCCAACTAAAAAGCAGCATATG
ATGGCGTCGACCAAGTGCTTTTCTATGAACGACTTACCGCTCACCACCGA
GCACGTGGAAGCCAAGATCTATCCACCGATTGCACCGCTGAGCGAGACCC
CTCTGCTGCTGCAGGAGATTCGAGCTGGTGTGATGGGTGTTTCGGTGGGA
CGACTATCGGGCAGATACTCCAAGATCATGGGAAAGTATCTTCCGGTAAG
AGAAAAGAGAAATATGAGCATGGTGTATGCGTCTTTTGTCAACCTTTGTT
GGGAACTCACTCTTTGTTTGTCTCCATTCACTCGTTCTTTATCTACATCA
GAGCACAGAGAAGCAGCGACGAGCAAGGAAAGAGGACCTGTCGGGATTAA
CGGCAGAGGAGAAGGTGGAGCGACGCAAGGTTCGCGCACGCATGTACAAT
CGCTTGTCTCGCTACCGGTGCAGCCGGCTGCATGGTGACCTGCACAAGGA
CGTGAGTCGCATGGAAATGTACAAGAACATTGTTGAAGATGCGCCGGACA
TGATATGTGTCATCTCCCCCGACATTCAGAGCCAGGTGCTGTACATCAAC
AAGACCGCTCGATGCATCCTTCACGCTGAGCCCGCGCAGCTGGTGGGGTC
CAGCTTCTGGAATATTGTCCACCCGGAAGATAAGATGGCGCTGTTCAGGG
CACTCACTGCCGTCTCCGCCTTCAAGTCGGTCGGGAAAGTGGAACGGCTA
CGCTGTCGTGTTGTCACCGACAACCTCGGTATCTATGTATCTGTCCGGAT
GACGCTCGCAAACGGGATGCAGGGCATTGTCTGCGTAATGTGCCACGAAG
ACCCTCTGTCTACCGTTTCGCGCGTGTCGCCTGATGGACGAGTGTGTCTT
ATGTAGGACGCTCTATTTTTGGGTACCATGATTATCTGACGATGGCTTGT
GGAGTACATAAATTACTATCGCGGTGGACACGGCAGAGGGTGTCCCTTGA
CTTCTAAGGCGACATGATGTGGCCTGATCCGTTACTCTCGGGGACAAGGG
CATCCGACCGGAACGAGTGGAGAGGCAATGAAAACGATACATTTCCGCTT
TATGCAGTAGAATCAAATTAGCAGAAAGCTTTCAAAAGATTCTTCTTTCC
CTTGTAGACCGTCTGCTGCGTCTTTCGCGCGACGTTGACGATTATGTAAA
CCGGGGAAGGGGAGCCAGGAGGTCCTTTTCACGTGACAAGTGATGAAACA
TTTTGAAAATACCGTTACTTTAAGTGGCCGCATTCATACAAGTAGCTATA
CATTGGATGAGGAAAAAGGTCACAAGTGCAAATATGGTCGATAAAAAAGA
AGGGAAAATGTTTGATATGAGATGAATTTTGTTGAATTACGGAGATAGGA
AGAAGAAGACGTGGGGAGAGAGAGAGTGTGAGTCTGAGAGATAGATAGAG
AGATAGCGATAGAAAGATAGAGAGAAAAAGAGAGAGGAAAAAAGAGGGCT
CGACGTGCCAGGGAAATAATTTCATACATGCTGGTGCTGGTGAGATCAAT
GAGAATAGTCTTCTTTGCATACTGAAAATGTACAAATGTTGGTATGGTTA
GTGTGATATATTATCAGAGGCGAGACTGATTTTTTGGGCCCGCCCTGTGC
CCTGTTGTTAGGAAGGGACCCTGAGATGAGGGTGAGGCACGACCGAAGGA
ATTGAAGAAAAGAAGAAAGTTTCTCCAATGTTATGTTGTGTACGGATTTC
CGAATGCTCTTTCCCGATCCTCACTAGAATTTCTTGATCACACGTCGGCC
GAGTCGCACTATGTTCTCGTTATCGTCATTTAAGGCTGCAGGCCTTCAAA
CGAGTTTTGACGGACAGAGCCGAGCGATGATCTCTTGGCGCGTCGACATG
ACGGCG back to topCoding sequence (CDS) from alignment at scaffold_52:7722..10527- >mRNA_10474 ID=mRNA_10474|Name=jgi.p|Nanoce1779_2|634013|organism=Nannochloropsis oceanica|type=CDS|length=3771bp|location=Sequence derived from alignment at scaffold_52:7722..10527- (Nannochloropsis oceanica)
AGCACAGAGAAGCAGCGACGAGCAAGGAAAGAGGACCTGTCGGGATTAAC
GGCAGAGGAGAAGGTGGAGCGACGCAAGGTTCGCGCACGCATGTACAATC
GCTTGTCTCGCTACCGGTGCAGCCGGCTGCATGGTGACCTGCACAAGGAC
GTGAGTCGCATGGAAATGTACAAGAACATTGTTGAAGATGCGCCGGACAT
GATATGTGTCATCTCCCCCGACATTCAGAGCCAGGTGCTGTACATCAACA
AGACCGCTCGATGCATCCTTCACGCTGAGCCCGCGCAGCTGGTGGGGTCC
AGCTTCTGGAATATTGTCCACCCGGAAGATAAGATGGCGCTGTTCAGGGC
ACTCACTGCCGTCTCCGCCTTCAAGTCGGTCGGGAAAGTGGAACGGCTAC
GCTGTCGTGTTGTCACCGACAACCTCGGTATCTATGTATCTGTCCGGATG
ACGCTCGCAAACGGGATGCAGGGCATTGTCTGCGTAATGTGCCACGAAGA
CCCTCTGTCTACCGTTTCGCGCGTGTCGCCTGATGGACGAGTGTGTCTTA
TGTAGAACTTCAGAAGCAGATGGTCGACAAATCATTGCAATCCTTTCTGA
CCCAGTACCAGCAACAGTCGGCCATTCACCAGCATGCTATCCTGGATGAT
AAGATGACCAATGTACTCTCCCAGGCCACGCCGTCTTTTCTAGCACAGCA
GCACCACCAGCTCCAGCAGTATTTCAACCGAAGTCACCTACCACTGCAGC
TTCATTACTTCCTACAATGCCAAATGCAGCCAACTAAAAAGCAGCATATG
ATGGCGTCGACCAAGTGCTTTTCTATGAACGACTTACCGCTCACCACCGA
GCACGTGGAAGCCAAGATCTATCCACCGATTGCACCGCTGAGCGAGACCC
CTCTGCTGCTGCAGGAGATTCGAGCTGGTGTGATGGGTGTTTCGGTGGGA
CGACTATCGGGCAGATACTCCAAGATCATGGGAAAGTATCTTCCGATGAC
ATTCGCTTATACGTGTTCGTATTCTCGAGAGGATATCGGGGCTTTTGGTC
CCACTGCTGAGCAGCGGCGGGACCAAAGCCAGCGCGACTGCCTCCACGGA
ATGAAGGATTCTGTCGACTTGGACGAGAAAAAGGCACATGGCGGCGCGGC
AGCCCTGTTCAGCCTAGCAACACTCTCTGCCGCTGCTGACCCGCTTCCCG
TCTCCACGCCGTGTTACCCCTCGTCTTGGGCCTCTTCTCTCGTAGCAGCG
AACCATGAGCACAGAGAAGCAGCGACGAGCAAGGAAAGAGGACCTGTCGG
GATTAACGGCAGAGGAGAAGGTGGAGCGACGCAAGGTTCGCGCACGCATG
TACAATCGCTTGTCTCGCTACCGGTGCAGCCGGCTGCATGGTGACCTGCA
CAAGGACGTGAGTCGCATGGAAATGTACAAGAACATTGTTGAAGATGCGC
CGGACATGATATGTGTCATCTCCCCCGACATTCAGAGCCAGGTGCTGTAC
ATCAACAAGACCGCTCGATGCATCCTTCACGCTGAGCCCGCGCAGCTGGT
GGGGTCCAGCTTCTGGAATATTGTCCACCCGGAAGATAAGATGGCGCTGT
TCAGGGCACTCACTGCCGTCTCCGCCTTCAAGTCGGTCGGGAAAGTGGAA
CGGCTACGCTGTCGTGTTGTCACCGACAACCTCGGTATCTATGTATCTGT
CCGGATGACGCTCGCAAACGGGATGCAGGGCATTGTCTGCGTAATGTGCC
ACGAAGACCCTCTGTCTACCGTTTCGCGCGTGTCGCCTGATGGACGAGTG
TGTCTTATGTAGAACTTCAGAAGCAGATGGTCGACAAATCATTGCAATCC
TTTCTGACCCAGTACCAGCAACAGTCGGCCATTCACCAGCATGCTATCCT
GGATGATAAGATGACCAATGTACTCTCCCAGGCCACGCCGTCTTTTCTAG
CACAGCAGCACCACCAGCTCCAGCAGTATTTCAACCGAAGTCACCTACCA
CTGCAGCTTCATTACTTCCTACAATGCCAAATGCAGCCAACTAAAAAGCA
GCATATGATGGCGTCGACCAAGTGCTTTTCTATGAACGACTTACCGCTCA
CCACCGAGCACGTGGAAGCCAAGATCTATCCACCGATTGCACCGCTGAGC
GAGACCCCTCTGCTGCTGCAGGAGATTCGAGCTGGTGTGATGGGTGTTTC
GGTGGGACGACTATCGGGCAGATACTCCAAGATCATGGGAAAGTATCTTC
CGATGACATTCGCTTATACGTGTTCGTATTCTCGAGAGGATATCGGGGCT
TTTGGTCCCACTGCTGAGCAGCGGCGGGACCAAAGCCAGCGCGACTGCCT
CCACGGAATGAAGGATTCTGTCGACTTGGACGAGAAAAAGGCACATGGCG
GCGCGGCAGCCCTGTTCAGCCTAGCAACACTCTCTGCCGCTGCTGACCCG
CTTCCCGTCTCCACGCCGTGTTACCCCTCGTCTTGGGCCTCTTCTCTCGT
AGCAGCGAACCATGAGCACAGAGAAGCAGCGACGAGCAAGGAAAGAGGAC
CTGTCGGGATTAACGGCAGAGGAGAAGGTGGAGCGACGCAAGGTTCGCGC
ACGCATGTACAATCGCTTGTCTCGCTACCGGTGCAGCCGGCTGCATGGTG
ACCTGCACAAGGACGTGAGTCGCATGGAAATGTACAAGAACATTGTTGAA
GATGCGCCGGACATGATATGTGTCATCTCCCCCGACATTCAGAGCCAGGT
GCTGTACATCAACAAGACCGCTCGATGCATCCTTCACGCTGAGCCCGCGC
AGCTGGTGGGGTCCAGCTTCTGGAATATTGTCCACCCGGAAGATAAGATG
GCGCTGTTCAGGGCACTCACTGCCGTCTCCGCCTTCAAGTCGGTCGGGAA
AGTGGAACGGCTACGCTGTCGTGTTGTCACCGACAACCTCGGTATCTATG
TATCTGTCCGGATGACGCTCGCAAACGGGATGCAGGGCATTGTCTGCGTA
ATGTGCCACGAAGACCCTCTGTCTACCGTTTCGCGCGTGTCGCCTGATGG
ACGAGTGTGTCTTATGTAGAACTTCAGAAGCAGATGGTCGACAAATCATT
GCAATCCTTTCTGACCCAGTACCAGCAACAGTCGGCCATTCACCAGCATG
CTATCCTGGATGATAAGATGACCAATGTACTCTCCCAGGCCACGCCGTCT
TTTCTAGCACAGCAGCACCACCAGCTCCAGCAGTATTTCAACCGAAGTCA
CCTACCACTGCAGCTTCATTACTTCCTACAATGCCAAATGCAGCCAACTA
AAAAGCAGCATATGATGGCGTCGACCAAGTGCTTTTCTATGAACGACTTA
CCGCTCACCACCGAGCACGTGGAAGCCAAGATCTATCCACCGATTGCACC
GCTGAGCGAGACCCCTCTGCTGCTGCAGGAGATTCGAGCTGGTGTGATGG
GTGTTTCGGTGGGACGACTATCGGGCAGATACTCCAAGATCATGGGAAAG
TATCTTCCGATGACATTCGCTTATACGTGTTCGTATTCTCGAGAGGATAT
CGGGGCTTTTGGTCCCACTGCTGAGCAGCGGCGGGACCAAAGCCAGCGCG
ACTGCCTCCACGGAATGAAGGATTCTGTCGACTTGGACGAGAAAAAGGCA
CATGGCGGCGCGGCAGCCCTGTTCAGCCTAGCAACACTCTCTGCCGCTGC
TGACCCGCTTCCCGTCTCCACGCCGTGTTACCCCTCGTCTTGGGCCTCTT
CTCTCGTAGCAGCGAACCATG back to top
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