jgi.p|Nanoce1779_2|610703, mRNA_10473 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610703
Unique Name	mRNA_10473
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1310
Alignment location	scaffold_52:7722..9031 +

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Properties


Property Name	Value
TranscriptId	610789
Track	FilteredModels2
ProteinId	610703

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_52	supercontig	scaffold_52:7722..9031 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610703	gene_10473	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610703	mRNA_10473-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10473	CDS_10473	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_52:7722..9031+
coding sequence from alignment at scaffold_52:7722..9031+

mRNA sequence

>mRNA_10473 ID=mRNA_10473|Name=jgi.p|Nanoce1779_2|610703|organism=Nannochloropsis oceanica|type=mRNA|length=1310bp
CGCCGTCATGTCGACGCGCCAAGAGATCATCGCTCGGCTCTGTCCGTCAA
AACTCGTTTGAAGGCCTGCAGCCTTAAATGACGATAACGAGAACATAGTG
CGACTCGGCCGACGTGTGATCAAGAAATTCTAGTGAGGATCGGGAAAGAG
CATTCGGAAATCCGTACACAACATAACATTGGAGAAACTTTCTTCTTTTC
TTCAATTCCTTCGGTCGTGCCTCACCCTCATCTCAGGGTCCCTTCCTAAC
AACAGGGCACAGGGCGGGCCCAAAAAATCAGTCTCGCCTCTGATAATATA
TCACACTAACCATACCAACATTTGTACATTTTCAGTATGCAAAGAAGACT
ATTCTCATTGATCTCACCAGCACCAGCATGTATGAAATTATTTCCCTGGC
ACGTCGAGCCCTCTTTTTTCCTCTCTCTTTTTCTCTCTATCTTTCTATCG
CTATCTCTCTATCTATCTCTCAGACTCACACTCTCTCTCTCCCCACGTCT
TCTTCTTCCTATCTCCGTAATTCAACAAAATTCATCTCATATCAAACATT
TTCCCTTCTTTTTTATCGACCATATTTGCACTTGTGACCTTTTTCCTCAT
CCAATGTATAGCTACTTGTATGAATGCGGCCACTTAAAGTAACGGTATTT
TCAAAATGTTTCATCACTTGTCACGTGAAAAGGACCTCCTGGCTCCCCTT
CCCCGGTTTACATAATCGTCAACGTCGCGCGAAAGACGCAGCAGACGGTC
TACAAGGGAAAGAAGAATCTTTTGAAAGCTTTCTGCTAATTTGATTCTAC
TGCATAAAGCGGAAATGTATCGTTTTCATTGCCTCTCCACTCGTTCCGGT
CGGATGCCCTTGTCCCCGAGAGTAACGGATCAGGCCACATCATGTCGCCT
TAGAAGTCAAGGGACACCCTCTGCCGTGTCCACCGCGATAGTAATTTATG
TACTCCACAAGCCATCGTCAGATAATCATGGTACCCAAAAATAGAGCGTC
CTACATAAGACACACTCGTCCATCAGGCGACACGCGCGAAACGGTAGACA
GAGGGTCTTCGTGGCACATTACGCAGACAATGCCCTGCATCCCGTTTGCG
AGCGTCATCCGGACAGATACATAGATACCGAGGTTGTCGGTGACAACACG
ACAGCGTAGCCGTTCCACTTTCCCGACCGACTTGAAGGCGGAGACGGCAG
TGAGTGCCCTGAACAGCGCCATCTTATCTTCCGGGTGGACAATATTCCAG
AAGCTGGACCCCACCAGCTGCGCGGGCTCAGCGTGAAGGATGCATCGAGC
GGTCTTGTTG

protein sequence of jgi.p|Nanoce1779_2|610703

>mRNA_10473-protein ID=mRNA_10473-protein|Name=jgi.p|Nanoce1779_2|610703|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MQRRLFSLISPAPACMKLFPWHVEPSFFLSLFLSIFLSLSLYLSLRLTLS
LSPRLLLPISVIQQNSSHIKHFPFFFIDHICTCDLFPHPMYSYLYECGHL
K*

mRNA from alignment at scaffold_52:7722..9031+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10473 ID=mRNA_10473|Name=jgi.p|Nanoce1779_2|610703|organism=Nannochloropsis oceanica|type=mRNA|length=1310bp|location=Sequence derived from alignment at scaffold_52:7722..9031+ (Nannochloropsis oceanica)
CGCCGTCATGTCGACGCGCCAAGAGATCATCGCTCGGCTCTGTCCGTCAA
AACTCGTTTGAAGGCCTGCAGCCTTAAATGACGATAACGAGAACATAGTG
CGACTCGGCCGACGTGTGATCAAGAAATTCTAGTGAGGATCGGGAAAGAG
CATTCGGAAATCCGTACACAACATAACATTGGAGAAACTTTCTTCTTTTC
TTCAATTCCTTCGGTCGTGCCTCACCCTCATCTCAGGGTCCCTTCCTAAC
AACAGGGCACAGGGCGGGCCCAAAAAATCAGTCTCGCCTCTGATAATATA
TCACACTAACCATACCAACATTTGTACATTTTCAGTATGCAAAGAAGACT
ATTCTCATTGATCTCACCAGCACCAGCATGTATGAAATTATTTCCCTGGC
ACGTCGAGCCCTCTTTTTTCCTCTCTCTTTTTCTCTCTATCTTTCTATCG
CTATCTCTCTATCTATCTCTCAGACTCACACTCTCTCTCTCCCCACGTCT
TCTTCTTCCTATCTCCGTAATTCAACAAAATTCATCTCATATCAAACATT
TTCCCTTCTTTTTTATCGACCATATTTGCACTTGTGACCTTTTTCCTCAT
CCAATGTATAGCTACTTGTATGAATGCGGCCACTTAAAGTAACGGTATTT
TCAAAATGTTTCATCACTTGTCACGTGAAAAGGACCTCCTGGCTCCCCTT
CCCCGGTTTACATAATCGTCAACGTCGCGCGAAAGACGCAGCAGACGGTC
TACAAGGGAAAGAAGAATCTTTTGAAAGCTTTCTGCTAATTTGATTCTAC
TGCATAAAGCGGAAATGTATCGTTTTCATTGCCTCTCCACTCGTTCCGGT
CGGATGCCCTTGTCCCCGAGAGTAACGGATCAGGCCACATCATGTCGCCT
TAGAAGTCAAGGGACACCCTCTGCCGTGTCCACCGCGATAGTAATTTATG
TACTCCACAAGCCATCGTCAGATAATCATGGTACCCAAAAATAGAGCGTC
CTACATAAGACACACTCGTCCATCAGGCGACACGCGCGAAACGGTAGACA
GAGGGTCTTCGTGGCACATTACGCAGACAATGCCCTGCATCCCGTTTGCG
AGCGTCATCCGGACAGATACATAGATACCGAGGTTGTCGGTGACAACACG
ACAGCGTAGCCGTTCCACTTTCCCGACCGACTTGAAGGCGGAGACGGCAG
TGAGTGCCCTGAACAGCGCCATCTTATCTTCCGGGTGGACAATATTCCAG
AAGCTGGACCCCACCAGCTGCGCGGGCTCAGCGTGAAGGATGCATCGAGC
GGTCTTGTTG

Coding sequence (CDS) from alignment at scaffold_52:7722..9031+

>mRNA_10473 ID=mRNA_10473|Name=jgi.p|Nanoce1779_2|610703|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_52:7722..9031+ (Nannochloropsis oceanica)
ATGCAAAGAAGACTATTCTCATTGATCTCACCAGCACCAGCATGTATGAA
ATTATTTCCCTGGCACGTCGAGCCCTCTTTTTTCCTCTCTCTTTTTCTCT
CTATCTTTCTATCGCTATCTCTCTATCTATCTCTCAGACTCACACTCTCT
CTCTCCCCACGTCTTCTTCTTCCTATCTCCGTAATTCAACAAAATTCATC
TCATATCAAACATTTTCCCTTCTTTTTTATCGACCATATTTGCACTTGTG
ACCTTTTTCCTCATCCAATGTATAGCTACTTGTATGAATGCGGCCACTTA
AAGTAA

Synonyms

Publications