jgi.p|Nanoce1779_2|149351, mRNA_1047 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|149351
Unique Name	mRNA_1047
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2220
Alignment location	scaffold_2:1090538..1092940 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	149437
Track	FilteredModels2
ProteinId	149351

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1090538..1092940 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|149351	gene_1047	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|149351	mRNA_1047-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1047	CDS_1047	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1090538..1092940+
coding sequence from alignment at scaffold_2:1090538..1092940+

mRNA sequence

>mRNA_1047 ID=mRNA_1047|Name=jgi.p|Nanoce1779_2|149351|organism=Nannochloropsis oceanica|type=mRNA|length=2220bp
GACATAGATTAGCTCAGACTCGACTAACAGAGGAATTGGAAGCATAGATA
TACGTTTTAACACTGTCGAGGGTAGACATGGAGGCAAGCCAGGAGTCACG
CAAGCATTCCTTCGTTGGGTCGAATGGTGGTGGGGCATGCGGTCCGAGCC
CCAGCCCATGCCCTCAGCCAGTTACATATCAGACTCCAACACACACACCA
TATCACAACCTATGGACACAAAAAATCAACTCTAGTAGTTACCAGGCGAC
GAATCGCAAGCTACATGCCGCTCCATCGTTAACAAGCGCTGCAAGCACCT
GGAGCAAGTTGGAGAGCAAGAGCGAGAATTACACTATCACGATGCGTACA
CTTTGCTGTCTCCATCCAAGACCCACGAGAAGTGCCTTGGCCATGAAGCA
TGTTGTGTCAGTCCTTGCCATCGTCGTTATGCTGCTGGTGGCCCCGAGAA
GTGGCGCATCCTCATTTCTGTCAAGAGATCTCTCTTTCGTCCCGCCACCA
CCGCTACAACTCCCGTCACCCTCCAACGGCCGTGTGGGCATCACCAGCCT
TCTCTATGCGCGACGACAAATTCCACGAATCAGTGACAACAGCAGAAGTG
GCTATGACTCCGGCCTGACACCAAGTAGCAGTCGCCCCGGCAGCCCGGGA
AGTAAAACGACCTCTTTCTCTCCTGCCCAAGCGCCCGCCGCAACAGCCGC
CGCATCCCACACCATCACCAGCCTGATCGGGCGAAGCGACAAAGTAGAAG
TCCTTCGAGCGATTGAAGGCCTCCCTCCTCAATTTTTAACCGGGGCCACC
GTCACTGCTGCATGGGACCGCCTTGCCCAACGTACTGTTTCGTCTGGCCC
CCGCGCCCCTCACCTTCCCCCTTTGCACACAGACCGTGCCTTCCTCCTCC
TCCTTGAACGGACCCGCGAATTACTGCTTGATCTCTCCCCAGGGCATTGC
GCTTCTATCGTTGGTAATCTTGCGAAGCTCCGTTATCGTCCTGATGATTC
ATTTCTCACCACGTTGCTCTCCTCTTGCCGTGCGCGGGAGGAGCGGCAAA
CCTTTGGCCAAGCGGCGCGGTTGGCGTCAGGATTGGCGAGGTTGGATTAT
ATTTTGGAGAACGATGAGCTGGAGAGATTGGCAAGGATTATGGATGAAAG
AATGAAGGTAATGGATTTGGATAGCTTGCATCCGGAGAGTCTGTCGCTGG
GGTTGTGGTCTTTGGCCGTGTTGGGTAAGCTGTCGGAGCCGGGGATGGAG
GGGTTGAGGGACGGCTTGGTGAAGGCGGCGATTGTGCGGTTGGATGCTGT
GCATATGGAGGCGACGGCGGTGGGACTTGGGCAGGGGCCAGTTTTGTCGG
AGGGAAAGGCTAAGAATTTGGTGCGGATTTGCAGACAGTTGAGGATAGCG
TTGCTGTTTTTGCCGCCTCCTGCTGCTACTGCTGCTGCTTCTGCGGGTGT
GCCTGCAGCGTCACGTTGTTCACTCTATTCTGGCTCAGCTGGCAGCAGCA
GCAGCAGCACCACCACCACCACCACCCTCTCTTCCCTCCCTTCATCCTCC
TTATCCTCTACCGAGCTCCTTCGACTTCGGATCAACCAAATCTGGCTCGA
TCTCGGCGCTTGGCTTGACCCTGTCCGTCCTTCCCGTCTTCAAACGGACG
TTGAAACGACCCTCCGCTCCAACGGTGCCTTCTTTACGAGGGAATGGGAG
GACGGCGTGGTCACTGTAGATATCGCCTTGCACCCACTACCGGTTCCCGA
AGGGAGCGAGGGAGAGAAGAAGGAAGGGACGGTGAGGCAGCCGGTGGCTT
TGGAGGTTGATGGGCCGTCGCATTTTTTTGTGAACCATCCACAGAGGCCG
ACGGGGGATACGAAGATCAAGCACCAGGCGTTACGCTTGAGCCAGCAATG
GTCGGCAATTATTTCATTGCCGCATTTTGAGTGGCCACGGGCGAGGATGG
GAGGGAAGCAGAAGAAGCCGCGGCAGCAACAGTTAGCGTGTTTGAGGAGG
AAAGTGGCGCAGACGGGGCTAGAGCCGGGAGATTTTTTGGTTTGAGTAAA
GGAGGAAAGCGAGGAAAGACTGGGGTTGTAGATACGAGAGAGGGGGAAAT
GGTGCATGTAAAATTAAGGCGAAACGACTTAAAGTGTACGTAAGCAAGAA
GGGAGGAGACAAAGGTCACCAAGAAGGCTCAAGTAAGAGATATATGTGTC
AACCGCATGTCATGATGAGA

protein sequence of jgi.p|Nanoce1779_2|149351

>mRNA_1047-protein ID=mRNA_1047-protein|Name=jgi.p|Nanoce1779_2|149351|organism=Nannochloropsis oceanica|type=polypeptide|length=656bp
MEASQESRKHSFVGSNGGGACGPSPSPCPQPVTYQTPTHTPYHNLWTQKI
NSSSYQATNRKLHAAPSLTSAASTWSKLESKSENYTITMRTLCCLHPRPT
RSALAMKHVVSVLAIVVMLLVAPRSGASSFLSRDLSFVPPPPLQLPSPSN
GRVGITSLLYARRQIPRISDNSRSGYDSGLTPSSSRPGSPGSKTTSFSPA
QAPAATAAASHTITSLIGRSDKVEVLRAIEGLPPQFLTGATVTAAWDRLA
QRTVSSGPRAPHLPPLHTDRAFLLLLERTRELLLDLSPGHCASIVGNLAK
LRYRPDDSFLTTLLSSCRAREERQTFGQAARLASGLARLDYILENDELER
LARIMDERMKVMDLDSLHPESLSLGLWSLAVLGKLSEPGMEGLRDGLVKA
AIVRLDAVHMEATAVGLGQGPVLSEGKAKNLVRICRQLRIALLFLPPPAA
TAAASAGVPAASRCSLYSGSAGSSSSSTTTTTTLSSLPSSSLSSTELLRL
RINQIWLDLGAWLDPVRPSRLQTDVETTLRSNGAFFTREWEDGVVTVDIA
LHPLPVPEGSEGEKKEGTVRQPVALEVDGPSHFFVNHPQRPTGDTKIKHQ
ALRLSQQWSAIISLPHFEWPRARMGGKQKKPRQQQLACLRRKVAQTGLEP
GDFLV*

mRNA from alignment at scaffold_2:1090538..1092940+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1047 ID=mRNA_1047|Name=jgi.p|Nanoce1779_2|149351|organism=Nannochloropsis oceanica|type=mRNA|length=2403bp|location=Sequence derived from alignment at scaffold_2:1090538..1092940+ (Nannochloropsis oceanica)
GACATAGATTAGCTCAGACTCGACTAACAGAGGAATTGGAAGCATAGATA
TACGTTTTAACACTGTCGAGGGTAGACATGGAGGCAAGCCAGGAGTCACG
CAAGCATTCCTTCGTTGGGTCGAATGGTGGTGGGGCATGCGGTCCGAGCC
CCAGCCCATGCCCTCAGCCAGTTACATATCAGACTCCAACACACACACCA
TATCACAACCTATGGACACAAAAAATCAACTCTAGTAGTTACCAGGCGAC
GAATCGCAAGCTACATGCCGCTCCATCGTTAACAAGCGCTGCAAGCACCT
GGAGCAAGTTGGAGAGCAAGAGCGAGAATTACACTATCACGATGCGTACA
CTTTGCTGTCTCCATCCAAGACCCACGAGAAGTGCCTTGGCCATGAAGCA
TGTTGTGTCAGTCCTTGCCATCGTCGTTATGCTGCTGGTGGCCCCGAGAA
GTGGCGCATCCTCATTTCTGTCAAGAGGTAAGAGGCAGTCGAGGCAGAGT
ACCCCCCTTATACTGGTTGAACCGCACCACTAATACCGCAGCTGACAACC
ATAGCGTGCTCGTTTCTCTTACGTCAAACGCGCATTGACAGAAAAGACAA
TAGGAACATTCTTTGTCTCTCGCCGTCTCTCACCTCCTCCCAACTTCCAC
CCCATTTCAGATCTCTCTTTCGTCCCGCCACCACCGCTACAACTCCCGTC
ACCCTCCAACGGCCGTGTGGGCATCACCAGCCTTCTCTATGCGCGACGAC
AAATTCCACGAATCAGTGACAACAGCAGAAGTGGCTATGACTCCGGCCTG
ACACCAAGTAGCAGTCGCCCCGGCAGCCCGGGAAGTAAAACGACCTCTTT
CTCTCCTGCCCAAGCGCCCGCCGCAACAGCCGCCGCATCCCACACCATCA
CCAGCCTGATCGGGCGAAGCGACAAAGTAGAAGTCCTTCGAGCGATTGAA
GGCCTCCCTCCTCAATTTTTAACCGGGGCCACCGTCACTGCTGCATGGGA
CCGCCTTGCCCAACGTACTGTTTCGTCTGGCCCCCGCGCCCCTCACCTTC
CCCCTTTGCACACAGACCGTGCCTTCCTCCTCCTCCTTGAACGGACCCGC
GAATTACTGCTTGATCTCTCCCCAGGGCATTGCGCTTCTATCGTTGGTAA
TCTTGCGAAGCTCCGTTATCGTCCTGATGATTCATTTCTCACCACGTTGC
TCTCCTCTTGCCGTGCGCGGGAGGAGCGGCAAACCTTTGGCCAAGCGGCG
CGGTTGGCGTCAGGATTGGCGAGGTTGGATTATATTTTGGAGAACGATGA
GCTGGAGAGATTGGCAAGGATTATGGATGAAAGAATGAAGGTAATGGATT
TGGATAGCTTGCATCCGGAGAGTCTGTCGCTGGGGTTGTGGTCTTTGGCC
GTGTTGGGTAAGCTGTCGGAGCCGGGGATGGAGGGGTTGAGGGACGGCTT
GGTGAAGGCGGCGATTGTGCGGTTGGATGCTGTGCATATGGAGGCGACGG
CGGTGGGACTTGGGCAGGGGCCAGTTTTGTCGGAGGGAAAGGCTAAGAAT
TTGGTGCGGATTTGCAGACAGTTGAGGATAGCGTTGCTGTTTTTGCCGCC
TCCTGCTGCTACTGCTGCTGCTTCTGCGGGTGTGCCTGCAGCGTCACGTT
GTTCACTCTATTCTGGCTCAGCTGGCAGCAGCAGCAGCAGCACCACCACC
ACCACCACCCTCTCTTCCCTCCCTTCATCCTCCTTATCCTCTACCGAGCT
CCTTCGACTTCGGATCAACCAAATCTGGCTCGATCTCGGCGCTTGGCTTG
ACCCTGTCCGTCCTTCCCGTCTTCAAACGGACGTTGAAACGACCCTCCGC
TCCAACGGTGCCTTCTTTACGAGGGAATGGGAGGACGGCGTGGTCACTGT
AGATATCGCCTTGCACCCACTACCGGTTCCCGAAGGGAGCGAGGGAGAGA
AGAAGGAAGGGACGGTGAGGCAGCCGGTGGCTTTGGAGGTTGATGGGCCG
TCGCATTTTTTTGTGAACCATCCACAGAGGCCGACGGGGGATACGAAGAT
CAAGCACCAGGCGTTACGCTTGAGCCAGCAATGGTCGGCAATTATTTCAT
TGCCGCATTTTGAGTGGCCACGGGCGAGGATGGGAGGGAAGCAGAAGAAG
CCGCGGCAGCAACAGTTAGCGTGTTTGAGGAGGAAAGTGGCGCAGACGGG
GCTAGAGCCGGGAGATTTTTTGGTTTGAGTAAAGGAGGAAAGCGAGGAAA
GACTGGGGTTGTAGATACGAGAGAGGGGGAAATGGTGCATGTAAAATTAA
GGCGAAACGACTTAAAGTGTACGTAAGCAAGAAGGGAGGAGACAAAGGTC
ACCAAGAAGGCTCAAGTAAGAGATATATGTGTCAACCGCATGTCATGATG
AGA

Coding sequence (CDS) from alignment at scaffold_2:1090538..1092940+

>mRNA_1047 ID=mRNA_1047|Name=jgi.p|Nanoce1779_2|149351|organism=Nannochloropsis oceanica|type=CDS|length=3936bp|location=Sequence derived from alignment at scaffold_2:1090538..1092940+ (Nannochloropsis oceanica)
ATGGAGGCAAGCCAGGAGTCACGCAAGCATTCCTTCGTTGGGTCGAATGG
TGGTGGGGCATGCGGTCCGAGCCCCAGCCCATGCCCTCAGCCAGTTACAT
ATCAGACTCCAACACACACACCATATCACAACCTATGGACACAAAAAATC
AACTCTAGTAGTTACCAGGCGACGAATCGCAAGCTACATGCCGCTCCATC
GTTAACAAGCGCTGCAAGCACCTGGAGCAAGTTGGAGAGCAAGAGCGAGA
ATTACACTATCACGATGCGTACACTTTGCTGTCTCCATCCAAGACCCACG
AGAAGTGCCTTGGCCATGAAGCATGTTGTGTCAGTCCTTGCCATCGTCGT
TATGCTGCTGGTGGCCCCGAGAAGTGGCGCATCCTCATTTCTGTCAAGAG
ATCTCTCTTTCGTCCCGCCACCACCGCTACAACTCCCGTCACCCTCCAAC
GGCCGTGTGGGCATCACCAGCCTTCTCTATGCGCGACGACAAATTCCACG
AATCAGTGACAACAGCAGAAGTGGCTATGACTCCGGCCTGACACCAAGTA
GCAGTCGCCCCGGCAGCCCGGGAAGTAAAACGACCTCTTTCTCTCCTGCC
CAAGCGCCCGCCGCAACAGCCGCCGCATCCCACACCATCACCAGCCTGAT
CGGGCGAAGCGACAAAGTAGAAGTCCTTCGAGCGATTGAAGGCCTCCCTC
CTCAATTTTTAACCGGGGCCACCGTCACTGCTGCATGGGACCGCCTTGCC
CAACGTACTGTTTCGTCTGGCCCCCGCGCCCCTCACCTTCCCCCTTTGCA
CACAGACCGTGCCTTCCTCCTCCTCCTTGAACGGACCCGCGAATTACTGC
TTGATCTCTCCCCAGGGCATTGCGCTTCTATCGTTGGTAATCTTGCGAAG
CTCCGTTATCGTCCTGATGATTCATTTCTCACCACGTTGCTCTCCTCTTG
CCGTGCGCGGGAGGAGCGGCAAACCTTTGGCCAAGCGGCGCGGTTGGCGT
CAGGATTGGCGAGGTTGGATTATATTTTGGAGAACGATGAGCTGGAGAGA
TTGGCAAGGATTATGGATGAAAGAATGAAGGTAATGGATTTGGATAGCTT
GCATCCGGAGAGTCTGTCGCTGGGGTTGTGGTCTTTGGCCGTGTTGGGTA
AGCTGTCGGAGCCGGGGATGGAGGGGTTGAGGGACGGCTTGGTGAAGGCG
GCGATTGTGCGGTTGGATGCTGTGCATATGGAGGCGACGGCGGTGGGACT
TGGGCAGGGGCCAGTTTTGTCGGAGGGAAAGGCTAAGAATTTGGTGCGGA
TTTGCAGACAGTTGAGGATAGCGTTGCTGTTTTTGCCGCCTCCTGCTGCT
ACTGCTGCTGCTTCTGCGGGTGTGCCTGCAGCGTCACGTTGTTCACTCTA
TTCTGGCTCAGCTGGCAGCAGCAGCAGCAGCACCACCACCACCACCACCC
TCTCTTCCCTCCCTTCATCCTCCTTATCCTCTACCGAGCTCCTTCGACTT
CGGATCAACCAAATCTGGCTCGATCTCGGCGCTTGGCTTGACCCTGTCCG
TCCTTCCCGTCTTCAAACGGACGTTGAAACGACCCTCCGCTCCAACGGTG
CCTTCTTTACGAGGGAATGGGAGGACGGCGTGGTCACTGTAGATATCGCC
TTGCACCCACTACCGGTTCCCGAAGGGAGCGAGGGAGAGAAGAAGGAAGG
GACGGTGAGGCAGCCGGTGGCTTTGGAGGTTGATGGGCCGTCGCATTTTT
TTGTGAACCATCCACAGAGGCCGACGGGGGATACGAAGATCAAGCACCAG
GCGTTACGCTTGAGCCAGCAATGGTCGGCAATTATTTCATTGCCGCATTT
TGAGTGGCCACGGGCGAGGATGGGAGGGAAGCAGAAGAAGCCGCGGCAGC
AACAGTTAGCGTGTTTGAGGAGGAAAGTGGCGCAGACGGGGCTAGAGCCG
GGAGATTTTTTGGTTTGAATGGAGGCAAGCCAGGAGTCACGCAAGCATTC
CTTCGTTGGGTCGAATGGTGGTGGGGCATGCGGTCCGAGCCCCAGCCCAT
GCCCTCAGCCAGTTACATATCAGACTCCAACACACACACCATATCACAAC
CTATGGACACAAAAAATCAACTCTAGTAGTTACCAGGCGACGAATCGCAA
GCTACATGCCGCTCCATCGTTAACAAGCGCTGCAAGCACCTGGAGCAAGT
TGGAGAGCAAGAGCGAGAATTACACTATCACGATGCGTACACTTTGCTGT
CTCCATCCAAGACCCACGAGAAGTGCCTTGGCCATGAAGCATGTTGTGTC
AGTCCTTGCCATCGTCGTTATGCTGCTGGTGGCCCCGAGAAGTGGCGCAT
CCTCATTTCTGTCAAGAGATCTCTCTTTCGTCCCGCCACCACCGCTACAA
CTCCCGTCACCCTCCAACGGCCGTGTGGGCATCACCAGCCTTCTCTATGC
GCGACGACAAATTCCACGAATCAGTGACAACAGCAGAAGTGGCTATGACT
CCGGCCTGACACCAAGTAGCAGTCGCCCCGGCAGCCCGGGAAGTAAAACG
ACCTCTTTCTCTCCTGCCCAAGCGCCCGCCGCAACAGCCGCCGCATCCCA
CACCATCACCAGCCTGATCGGGCGAAGCGACAAAGTAGAAGTCCTTCGAG
CGATTGAAGGCCTCCCTCCTCAATTTTTAACCGGGGCCACCGTCACTGCT
GCATGGGACCGCCTTGCCCAACGTACTGTTTCGTCTGGCCCCCGCGCCCC
TCACCTTCCCCCTTTGCACACAGACCGTGCCTTCCTCCTCCTCCTTGAAC
GGACCCGCGAATTACTGCTTGATCTCTCCCCAGGGCATTGCGCTTCTATC
GTTGGTAATCTTGCGAAGCTCCGTTATCGTCCTGATGATTCATTTCTCAC
CACGTTGCTCTCCTCTTGCCGTGCGCGGGAGGAGCGGCAAACCTTTGGCC
AAGCGGCGCGGTTGGCGTCAGGATTGGCGAGGTTGGATTATATTTTGGAG
AACGATGAGCTGGAGAGATTGGCAAGGATTATGGATGAAAGAATGAAGGT
AATGGATTTGGATAGCTTGCATCCGGAGAGTCTGTCGCTGGGGTTGTGGT
CTTTGGCCGTGTTGGGTAAGCTGTCGGAGCCGGGGATGGAGGGGTTGAGG
GACGGCTTGGTGAAGGCGGCGATTGTGCGGTTGGATGCTGTGCATATGGA
GGCGACGGCGGTGGGACTTGGGCAGGGGCCAGTTTTGTCGGAGGGAAAGG
CTAAGAATTTGGTGCGGATTTGCAGACAGTTGAGGATAGCGTTGCTGTTT
TTGCCGCCTCCTGCTGCTACTGCTGCTGCTTCTGCGGGTGTGCCTGCAGC
GTCACGTTGTTCACTCTATTCTGGCTCAGCTGGCAGCAGCAGCAGCAGCA
CCACCACCACCACCACCCTCTCTTCCCTCCCTTCATCCTCCTTATCCTCT
ACCGAGCTCCTTCGACTTCGGATCAACCAAATCTGGCTCGATCTCGGCGC
TTGGCTTGACCCTGTCCGTCCTTCCCGTCTTCAAACGGACGTTGAAACGA
CCCTCCGCTCCAACGGTGCCTTCTTTACGAGGGAATGGGAGGACGGCGTG
GTCACTGTAGATATCGCCTTGCACCCACTACCGGTTCCCGAAGGGAGCGA
GGGAGAGAAGAAGGAAGGGACGGTGAGGCAGCCGGTGGCTTTGGAGGTTG
ATGGGCCGTCGCATTTTTTTGTGAACCATCCACAGAGGCCGACGGGGGAT
ACGAAGATCAAGCACCAGGCGTTACGCTTGAGCCAGCAATGGTCGGCAAT
TATTTCATTGCCGCATTTTGAGTGGCCACGGGCGAGGATGGGAGGGAAGC
AGAAGAAGCCGCGGCAGCAACAGTTAGCGTGTTTGAGGAGGAAAGTGGCG
CAGACGGGGCTAGAGCCGGGAGATTTTTTGGTTTGA

Synonyms

Publications