jgi.p|Nanoce1779_2|634140, mRNA_10466 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|634140
Unique NamemRNA_10466
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length362
Alignment locationscaffold_57:88741..89126 -

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Properties
Property NameValue
TranscriptId634226
TrackFilteredModels2
ProteinId634140
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:88741..89126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634140gene_10466Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634140mRNA_10466-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10466CDS_10466Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10466 ID=mRNA_10466|Name=jgi.p|Nanoce1779_2|634140|organism=Nannochloropsis oceanica|type=mRNA|length=362bp
ACAGAAGCGAATGCACAATTATGGACAGCCACTACGACGAGCGCCAGTTT
TACTTGCCGCAGCCACCGCCTTTCTCCCTTCCCCCGAAGCATTATCTTCC
CCTTTCTCCCCCGCCTCATGGCTTGCTCCTCCATAACCAGCAGCAGCAGC
CACATGAGCAGCGCCAGCAGCAGTACGAAAAGAAGCATCTGATGGCTTCG
AAACCGCCACGCCGGCCTCGGAATGCTTACCTTCTCTTCTTCACGGCCCG
GGGTCCCACCCTCAAGGCAAGACTGACAGCACGACAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGTCGAAGGAGCAGGAGAAAGAGCAGCAGCAG
TTCAACGAAGGG
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protein sequence of jgi.p|Nanoce1779_2|634140

>mRNA_10466-protein ID=mRNA_10466-protein|Name=jgi.p|Nanoce1779_2|634140|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MDSHYDERQFYLPQPPPFSLPPKHYLPLSPPPHGLLLHNQQQQPHEQRQQ
QYEKKHLMASKPPRRPRNAYLLFFTARGPTLKARLTARQQQQQQQQQQQQ
SKEQEKEQQQFNEG
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mRNA from alignment at scaffold_57:88741..89126-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10466 ID=mRNA_10466|Name=jgi.p|Nanoce1779_2|634140|organism=Nannochloropsis oceanica|type=mRNA|length=386bp|location=Sequence derived from alignment at scaffold_57:88741..89126- (Nannochloropsis oceanica)
ACAGAAGCGAATGCACAATTATGGACAGCCACTACGACGAGCGCCAGTTT
TACTTGCCGCAGCCACCGCCTTTCTCCCTTCCCCCGAAGCATTATCTTCC
CCTTTCTCCCCCGCCTCATGGCTTGCTCCTCCATAACCAGCAGCAGCAGC
CACATGAGCAGCGCCAGCAGCAGTACGAAAAGAAGCATCTGATGGCTTCG
AAACCGCCACGCCGGCCTCGGAATGCTTACCTTCTCTTCTTCACGGCCCG
GGGTCCCACCCTCAAGGCAAGACTGACAGCACGACAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCGAAG
GAGCAGGAGAAAGAGCAGCAGCAGTTCAACGAAGGG
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Coding sequence (CDS) from alignment at scaffold_57:88741..89126-

>mRNA_10466 ID=mRNA_10466|Name=jgi.p|Nanoce1779_2|634140|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_57:88741..89126- (Nannochloropsis oceanica)
TCGAAGGAGCAGGAGAAAGAGCAGCAGCAGTTCAACGAAGGGATGGACAG
CCACTACGACGAGCGCCAGTTTTACTTGCCGCAGCCACCGCCTTTCTCCC
TTCCCCCGAAGCATTATCTTCCCCTTTCTCCCCCGCCTCATGGCTTGCTC
CTCCATAACCAGCAGCAGCAGCCACATGAGCAGCGCCAGCAGCAGTACGA
AAAGAAGCATCTGATGGCTTCGAAACCGCCACGCCGGCCTCGGAATGCTT
ACCTTCTCTTCTTCACGGCCCGGGGTCCCACCCTCAAGGCAAGACTGACA
GCACGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCGAAGGA
GCAGGAGAAAGAGCAGCAGCAGTTCAACGAAGGGATGGACAGCCACTACG
ACGAGCGCCAGTTTTACTTGCCGCAGCCACCGCCTTTCTCCCTTCCCCCG
AAGCATTATCTTCCCCTTTCTCCCCCGCCTCATGGCTTGCTCCTCCATAA
CCAGCAGCAGCAGCCACATGAGCAGCGCCAGCAGCAGTACGAAAAGAAGC
ATCTGATGGCTTCGAAACCGCCACGCCGGCCTCGGAATGCTTACCTTCTC
TTCTTCACGGCCCGGGGTCCCACCCTCAAGGCAAGACTGACAGCACGACA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
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Synonyms
Publications