jgi.p|Nanoce1779_2|611610, mRNA_10464 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611610
Unique NamemRNA_10464
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length974
Alignment locationscaffold_57:86125..87098 +

Link to JBrowse

Properties
Property NameValue
TranscriptId611696
TrackFilteredModels2
ProteinId611610
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:86125..87098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611610gene_10464Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611610mRNA_10464-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10464CDS_10464Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10464 ID=mRNA_10464|Name=jgi.p|Nanoce1779_2|611610|organism=Nannochloropsis oceanica|type=mRNA|length=974bp
ACAGGCCTGTCTCCAAAATGGGACACATAAAGACCACGTGGCCAGCAATA
GTGATTTTTGTGTCTTTAGTCGTCTTTTTGTCCGATGGACAGAAGTTTTT
TAAAGTATATTCTAGCAATGCACCGGCAATTCCCTCTTCATTCCTGGGAG
ACTTGGAAAGTGGCGACTTCCAGCTCGCATTCGATGAAAGTGCGGGGTAC
TTCGATGACATTCGAGAAAGCGATTGGAAGCTAATCAAGGCGAGGATTAA
TAACACGCCGAATTGTGCGAGTGAATGTGAGCCAGAGGAGCCTCCTACCT
GGTATCAAAACAATTGGGAGCCTGCGATCAGCTGCCAACACGAAAGACGG
ATAGGCGCATTGGGAGACGGGGGAAAGTGGGTGTGCGATCCTCACCGTAT
TCTAAATAAGCCGTCGAAATCTTGCCTTGTGTACAGTATAGGATCTAACA
ATGAATTCACATTCGAAAAAGCTATTCGCAGAGATATTTCTTCAGAGTGT
GAAGTCCACACTTTTGATCCGACTGTGGGTAATCATCCGTCAAATCTACC
GAAGAATGAAAATATCACATTTCATCCTTGGGGCTTGGGGGCGACGAATC
AAGGTGCTTACAAGAATTTAAATACCATAATCAACGAGCTAGGTCATGCA
GGAAAAGAGATCGACATCTTCAAGATTGACTGTGAAGGATGCGAATTTGA
AACTGTTAGATCTTGGTTCGGCGACGGTTCCGTGGCAATCCGTCAAATCC
TTTTGGAGATTCATAAGGGTACAGAAGGCGCACAACCTCCGCCGACTCAA
GAGCTTATGCTCTTCCTAGAAAGCAAAGGGTTTGTCATCTTCCACAAGGA
GCCCAATATTCAGTATGGTGGAGGGCTTTGCATTGAATATGCATTTTTAC
GCCTGCGTCCACCTCTGCGATCAGCATCATGAGAGACCAAAGAACTCCAC
ATGTACGAAATCATGAAATTTCAA
back to top

protein sequence of jgi.p|Nanoce1779_2|611610

>mRNA_10464-protein ID=mRNA_10464-protein|Name=jgi.p|Nanoce1779_2|611610|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MGHIKTTWPAIVIFVSLVVFLSDGQKFFKVYSSNAPAIPSSFLGDLESGD
FQLAFDESAGYFDDIRESDWKLIKARINNTPNCASECEPEEPPTWYQNNW
EPAISCQHERRIGALGDGGKWVCDPHRILNKPSKSCLVYSIGSNNEFTFE
KAIRRDISSECEVHTFDPTVGNHPSNLPKNENITFHPWGLGATNQGAYKN
LNTIINELGHAGKEIDIFKIDCEGCEFETVRSWFGDGSVAIRQILLEIHK
GTEGAQPPPTQELMLFLESKGFVIFHKEPNIQYGGGLCIEYAFLRLRPPL
RSAS*
back to top

mRNA from alignment at scaffold_57:86125..87098+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10464 ID=mRNA_10464|Name=jgi.p|Nanoce1779_2|611610|organism=Nannochloropsis oceanica|type=mRNA|length=974bp|location=Sequence derived from alignment at scaffold_57:86125..87098+ (Nannochloropsis oceanica)
ACAGGCCTGTCTCCAAAATGGGACACATAAAGACCACGTGGCCAGCAATA
GTGATTTTTGTGTCTTTAGTCGTCTTTTTGTCCGATGGACAGAAGTTTTT
TAAAGTATATTCTAGCAATGCACCGGCAATTCCCTCTTCATTCCTGGGAG
ACTTGGAAAGTGGCGACTTCCAGCTCGCATTCGATGAAAGTGCGGGGTAC
TTCGATGACATTCGAGAAAGCGATTGGAAGCTAATCAAGGCGAGGATTAA
TAACACGCCGAATTGTGCGAGTGAATGTGAGCCAGAGGAGCCTCCTACCT
GGTATCAAAACAATTGGGAGCCTGCGATCAGCTGCCAACACGAAAGACGG
ATAGGCGCATTGGGAGACGGGGGAAAGTGGGTGTGCGATCCTCACCGTAT
TCTAAATAAGCCGTCGAAATCTTGCCTTGTGTACAGTATAGGATCTAACA
ATGAATTCACATTCGAAAAAGCTATTCGCAGAGATATTTCTTCAGAGTGT
GAAGTCCACACTTTTGATCCGACTGTGGGTAATCATCCGTCAAATCTACC
GAAGAATGAAAATATCACATTTCATCCTTGGGGCTTGGGGGCGACGAATC
AAGGTGCTTACAAGAATTTAAATACCATAATCAACGAGCTAGGTCATGCA
GGAAAAGAGATCGACATCTTCAAGATTGACTGTGAAGGATGCGAATTTGA
AACTGTTAGATCTTGGTTCGGCGACGGTTCCGTGGCAATCCGTCAAATCC
TTTTGGAGATTCATAAGGGTACAGAAGGCGCACAACCTCCGCCGACTCAA
GAGCTTATGCTCTTCCTAGAAAGCAAAGGGTTTGTCATCTTCCACAAGGA
GCCCAATATTCAGTATGGTGGAGGGCTTTGCATTGAATATGCATTTTTAC
GCCTGCGTCCACCTCTGCGATCAGCATCATGAGAGACCAAAGAACTCCAC
ATGTACGAAATCATGAAATTTCAA
back to top

Coding sequence (CDS) from alignment at scaffold_57:86125..87098+

>mRNA_10464 ID=mRNA_10464|Name=jgi.p|Nanoce1779_2|611610|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at scaffold_57:86125..87098+ (Nannochloropsis oceanica)
ATGGGACACATAAAGACCACGTGGCCAGCAATAGTGATTTTTGTGTCTTT
AGTCGTCTTTTTGTCCGATGGACAGAAGTTTTTTAAAGTATATTCTAGCA
ATGCACCGGCAATTCCCTCTTCATTCCTGGGAGACTTGGAAAGTGGCGAC
TTCCAGCTCGCATTCGATGAAAGTGCGGGGTACTTCGATGACATTCGAGA
AAGCGATTGGAAGCTAATCAAGGCGAGGATTAATAACACGCCGAATTGTG
CGAGTGAATGTGAGCCAGAGGAGCCTCCTACCTGGTATCAAAACAATTGG
GAGCCTGCGATCAGCTGCCAACACGAAAGACGGATAGGCGCATTGGGAGA
CGGGGGAAAGTGGGTGTGCGATCCTCACCGTATTCTAAATAAGCCGTCGA
AATCTTGCCTTGTGTACAGTATAGGATCTAACAATGAATTCACATTCGAA
AAAGCTATTCGCAGAGATATTTCTTCAGAGTGTGAAGTCCACACTTTTGA
TCCGACTGTGGGTAATCATCCGTCAAATCTACCGAAGAATGAAAATATCA
CATTTCATCCTTGGGGCTTGGGGGCGACGAATCAAGGTGCTTACAAGAAT
TTAAATACCATAATCAACGAGCTAGGTCATGCAGGAAAAGAGATCGACAT
CTTCAAGATTGACTGTGAAGGATGCGAATTTGAAACTGTTAGATCTTGGT
TCGGCGACGGTTCCGTGGCAATCCGTCAAATCCTTTTGGAGATTCATAAG
GGTACAGAAGGCGCACAACCTCCGCCGACTCAAGAGCTTATGCTCTTCCT
AGAAAGCAAAGGGTTTGTCATCTTCCACAAGGAGCCCAATATTCAGTATG
GTGGAGGGCTTTGCATTGAATATGCATTTTTACGCCTGCGTCCACCTCTG
CGATCAGCATCATGA
back to top
Synonyms
Publications