jgi.p|Nanoce1779_2|611604, mRNA_10463 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611604
Unique NamemRNA_10463
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1457
Alignment locationscaffold_57:83969..85425 -

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Properties
Property NameValue
TranscriptId611690
TrackFilteredModels2
ProteinId611604
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:83969..85425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611604gene_10463Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611604mRNA_10463-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10463CDS_10463Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10463 ID=mRNA_10463|Name=jgi.p|Nanoce1779_2|611604|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp
CTTCTCTCATCGCTCGAAAAACTTCAAGAAGCATGCCGCAGGCGTGTTCT
CTAGGGAGGCTTTAAATTTGAGGCTTGGGTGGGAATACCCAAGCATTACG
GTGAAATTAACCACCCGGAGTCAAATCATAGTATTATGGCTATGATGAAC
GGGTGCTTTCGGTGCCCGTGGCCCGTCAAGAGGCACGATAATAGACTATA
GTAAGCGTTGATGCACGCTGATTCACCGTCCCAGGTTGGCGCTGCTTGCA
TGATATATAATTTTGAATGCGAAAGTAAATCATTACAGTATCGCTGCAGA
GCTTGGAAAGAAGTAATATTGAGTTTATCCTGAGTGGTTGCAGCCGTGTA
CAAAGAACCATTGCACAGGAACGGCGAGTGCTGAGCAGTGACTCCCGCGG
TGATATAGCATTACCTTGACATTTAAGGCCCAATCATGCGTCAATGGAAG
CGGATGGTTCGGATTTGATTTATACGAACATTAAATGACTATCTGTACAG
GAATTTTATCTATACTTATCCTATAAAGATTGGGAGGTTGGTGTAGTGAA
AATTGTTCATTGCGGCTCAGGGACCGAGGGACAGAGGAAGGGAGGAAGGG
AGAAAGGAAAGGAGAGAGGAAAAAATGTGAAGGAGGACAAGGAGAGATAG
AATTGCCGAGATATGTGGGCGTGTGATCTGAGAGGGAAGAAAGGAAGGGG
AGGAGGAGGACGGAGGGAAAGAGAGAACAGGAGCTCAAGTAATCACCTAG
CTGCCGCACACATACATACAGGCAAGGCGGGGAGATGGCTTTGGCTGGGG
GGCCCGAGGAGAATAGGGAAGGTCAGAGACGCGGTTAATCAGCCGAACGA
TTCCTGTGAGCTGGAGGGTGATTTCTGTAGCTGTCGCATCTTGTCTGGAA
CAGCATGCATCCATGGCTCTTAACCTCTCTCCCAATCCCCTCTGTTCATT
CAATTTCTCCATTCCATTTATCTGCTCATTGCTTTCCGAAGACAGAAATT
GAGCTTATTACAAAGAGCCATGGGGGGCATCAAGAGAAGGGGAGGCCTCG
TCGGCTATCTCGCAAAAGCAGAAACCAAATGACCATCACACATGCTAATA
GTGAGAAGGTAAGAAAGGGATGTCTAGAATACGTAGTTAGAGATCAATCG
GAAAGCATGACCCAAAGAAGAGAAGTATTAGACCGCAGAGGAGGAGCAGA
ATAGGGCGGGAGGGACAAGCAGGAGGAAGGGGGAAAGAAAAAGGAGGATG
GGTGGGAGGGTCGGAAGAGGAGGATTTTGGTGGTGCCTACTTATCAAACG
GTATTTTTGGAGAGGCTGGAGTTCGAAGGCACCCATCAACAAGCAAAGCT
TAAGGATGAAGCAAGGCTAGCGATCAGAAGCGAGGAATGAAGGAAAAGAC
ACAGGATTTTGATGGTGCCTACTTATCAAACGGCATTTTTGGAGAGGCTG
GAGTTCG
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protein sequence of jgi.p|Nanoce1779_2|611604

>mRNA_10463-protein ID=mRNA_10463-protein|Name=jgi.p|Nanoce1779_2|611604|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MHPWLLTSLPIPSVHSISPFHLSAHCFPKTEIELITKSHGGHQEKGRPRR
LSRKSRNQMTITHANSEKVRKGCLEYVVRDQSESMTQRREVLDRRGGAE*
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mRNA from alignment at scaffold_57:83969..85425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10463 ID=mRNA_10463|Name=jgi.p|Nanoce1779_2|611604|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp|location=Sequence derived from alignment at scaffold_57:83969..85425- (Nannochloropsis oceanica)
CTTCTCTCATCGCTCGAAAAACTTCAAGAAGCATGCCGCAGGCGTGTTCT
CTAGGGAGGCTTTAAATTTGAGGCTTGGGTGGGAATACCCAAGCATTACG
GTGAAATTAACCACCCGGAGTCAAATCATAGTATTATGGCTATGATGAAC
GGGTGCTTTCGGTGCCCGTGGCCCGTCAAGAGGCACGATAATAGACTATA
GTAAGCGTTGATGCACGCTGATTCACCGTCCCAGGTTGGCGCTGCTTGCA
TGATATATAATTTTGAATGCGAAAGTAAATCATTACAGTATCGCTGCAGA
GCTTGGAAAGAAGTAATATTGAGTTTATCCTGAGTGGTTGCAGCCGTGTA
CAAAGAACCATTGCACAGGAACGGCGAGTGCTGAGCAGTGACTCCCGCGG
TGATATAGCATTACCTTGACATTTAAGGCCCAATCATGCGTCAATGGAAG
CGGATGGTTCGGATTTGATTTATACGAACATTAAATGACTATCTGTACAG
GAATTTTATCTATACTTATCCTATAAAGATTGGGAGGTTGGTGTAGTGAA
AATTGTTCATTGCGGCTCAGGGACCGAGGGACAGAGGAAGGGAGGAAGGG
AGAAAGGAAAGGAGAGAGGAAAAAATGTGAAGGAGGACAAGGAGAGATAG
AATTGCCGAGATATGTGGGCGTGTGATCTGAGAGGGAAGAAAGGAAGGGG
AGGAGGAGGACGGAGGGAAAGAGAGAACAGGAGCTCAAGTAATCACCTAG
CTGCCGCACACATACATACAGGCAAGGCGGGGAGATGGCTTTGGCTGGGG
GGCCCGAGGAGAATAGGGAAGGTCAGAGACGCGGTTAATCAGCCGAACGA
TTCCTGTGAGCTGGAGGGTGATTTCTGTAGCTGTCGCATCTTGTCTGGAA
CAGCATGCATCCATGGCTCTTAACCTCTCTCCCAATCCCCTCTGTTCATT
CAATTTCTCCATTCCATTTATCTGCTCATTGCTTTCCGAAGACAGAAATT
GAGCTTATTACAAAGAGCCATGGGGGGCATCAAGAGAAGGGGAGGCCTCG
TCGGCTATCTCGCAAAAGCAGAAACCAAATGACCATCACACATGCTAATA
GTGAGAAGGTAAGAAAGGGATGTCTAGAATACGTAGTTAGAGATCAATCG
GAAAGCATGACCCAAAGAAGAGAAGTATTAGACCGCAGAGGAGGAGCAGA
ATAGGGCGGGAGGGACAAGCAGGAGGAAGGGGGAAAGAAAAAGGAGGATG
GGTGGGAGGGTCGGAAGAGGAGGATTTTGGTGGTGCCTACTTATCAAACG
GTATTTTTGGAGAGGCTGGAGTTCGAAGGCACCCATCAACAAGCAAAGCT
TAAGGATGAAGCAAGGCTAGCGATCAGAAGCGAGGAATGAAGGAAAAGAC
ACAGGATTTTGATGGTGCCTACTTATCAAACGGCATTTTTGGAGAGGCTG
GAGTTCG
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Coding sequence (CDS) from alignment at scaffold_57:83969..85425-

>mRNA_10463 ID=mRNA_10463|Name=jgi.p|Nanoce1779_2|611604|organism=Nannochloropsis oceanica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_57:83969..85425- (Nannochloropsis oceanica)
ATGCATCCATGGCTCTTAACCTCTCTCCCAATCCCCTCTGTTCATTCAAT
TTCTCCATTCCATTTATCTGCTCATTGCTTTCCGAAGACAGAAATTGAGC
TTATTACAAAGAGCCATGGGGGGCATCAAGAGAAGGGGAGGCCTCGTCGG
CTATCTCGCAAAAGCAGAAACCAAATGACCATCACACATGCTAATAGTGA
GAAGGTAAGAAAGGGATGTCTAGAATACGTAGTTAGAGATCAATCGGAAA
GCATGACCCAAAGAAGAGAAGTATTAGACCGCAGAGGAGGAGCAGAATAG
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Synonyms
Publications