jgi.p|Nanoce1779_2|611599, mRNA_10462 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611599
Unique NamemRNA_10462
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length522
Alignment locationscaffold_57:82961..83482 -

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Properties
Property NameValue
TranscriptId611685
TrackFilteredModels2
ProteinId611599
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:82961..83482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611599gene_10462Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611599mRNA_10462-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10462CDS_10462Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10462 ID=mRNA_10462|Name=jgi.p|Nanoce1779_2|611599|organism=Nannochloropsis oceanica|type=mRNA|length=522bp
AAGTGTCCGTCTTGCGCAAACGGATCGCCATGCGGGCCTTACGGGCCATG
TGGTGGTTGTGGTGGTGGTGGTGGTGCTGCTGCTGCTGCTGTGCTGCCCA
GGACCAAAGTGGTAATAAGGGACGTCGACGAAGGCCGTCTTGATGCTTTC
AATCTCGGCCATATTAGCGCTATTCAGAAGGAAGGTTGTGTCAATGGCAA
TAGCAATAGCAGATTCCAAAGCTGAGAGCTGTACAACGTCCACCCCTTCC
AACATAGCCTTTGAAAAGCAACGGCTGGTCCAACGGGCAGTCAAAAAATA
TCAGTTGGGCCTTACACGAGACCTTCATTCCCATTTTACGCGAGCAAAAG
GCTCGACCATACACGCATATGCCTTCAACTTATCTCTGCATTTTTCCGAA
ATGGAGCTATATTCATCTTGCTGCCTCTAACTCATTTTTCGTTTTTCATT
CCCACTCCACCCTACATAACAGTGAGAGAATTAAAAATTAAATTATGTTG
TGCCCACCGCCGCGTCTCCTCC
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protein sequence of jgi.p|Nanoce1779_2|611599

>mRNA_10462-protein ID=mRNA_10462-protein|Name=jgi.p|Nanoce1779_2|611599|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MLSISAILALFRRKVVSMAIAIADSKAESCTTSTPSNIAFEKQRLVQRAV
KKYQLGLTRDLHSHFTRAKGSTIHAYAFNLSLHFSEMELYSSCCL*
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mRNA from alignment at scaffold_57:82961..83482-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10462 ID=mRNA_10462|Name=jgi.p|Nanoce1779_2|611599|organism=Nannochloropsis oceanica|type=mRNA|length=522bp|location=Sequence derived from alignment at scaffold_57:82961..83482- (Nannochloropsis oceanica)
AAGTGTCCGTCTTGCGCAAACGGATCGCCATGCGGGCCTTACGGGCCATG
TGGTGGTTGTGGTGGTGGTGGTGGTGCTGCTGCTGCTGCTGTGCTGCCCA
GGACCAAAGTGGTAATAAGGGACGTCGACGAAGGCCGTCTTGATGCTTTC
AATCTCGGCCATATTAGCGCTATTCAGAAGGAAGGTTGTGTCAATGGCAA
TAGCAATAGCAGATTCCAAAGCTGAGAGCTGTACAACGTCCACCCCTTCC
AACATAGCCTTTGAAAAGCAACGGCTGGTCCAACGGGCAGTCAAAAAATA
TCAGTTGGGCCTTACACGAGACCTTCATTCCCATTTTACGCGAGCAAAAG
GCTCGACCATACACGCATATGCCTTCAACTTATCTCTGCATTTTTCCGAA
ATGGAGCTATATTCATCTTGCTGCCTCTAACTCATTTTTCGTTTTTCATT
CCCACTCCACCCTACATAACAGTGAGAGAATTAAAAATTAAATTATGTTG
TGCCCACCGCCGCGTCTCCTCC
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Coding sequence (CDS) from alignment at scaffold_57:82961..83482-

>mRNA_10462 ID=mRNA_10462|Name=jgi.p|Nanoce1779_2|611599|organism=Nannochloropsis oceanica|type=CDS|length=288bp|location=Sequence derived from alignment at scaffold_57:82961..83482- (Nannochloropsis oceanica)
ATGCTTTCAATCTCGGCCATATTAGCGCTATTCAGAAGGAAGGTTGTGTC
AATGGCAATAGCAATAGCAGATTCCAAAGCTGAGAGCTGTACAACGTCCA
CCCCTTCCAACATAGCCTTTGAAAAGCAACGGCTGGTCCAACGGGCAGTC
AAAAAATATCAGTTGGGCCTTACACGAGACCTTCATTCCCATTTTACGCG
AGCAAAAGGCTCGACCATACACGCATATGCCTTCAACTTATCTCTGCATT
TTTCCGAAATGGAGCTATATTCATCTTGCTGCCTCTAA
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Synonyms
Publications