jgi.p|Nanoce1779_2|611598, mRNA_10461 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611598
Unique NamemRNA_10461
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length929
Alignment locationscaffold_57:81957..83015 +

Link to JBrowse

Properties
Property NameValue
TranscriptId611684
TrackFilteredModels2
ProteinId611598
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:81957..83015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611598gene_10461Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611598mRNA_10461-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10461CDS_10461Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10461 ID=mRNA_10461|Name=jgi.p|Nanoce1779_2|611598|organism=Nannochloropsis oceanica|type=mRNA|length=929bp
CCTCCCTCCAGCCCTACTAGCATAGGAAAGGGAACATCGGCCACACAGCC
TGCGAAGTCTAGGCCGGGTGGGAGGGAGGGGATGAAGGCATGCGCCCACG
GTAGAGGCAGAAGCCACGAGAGAAGCAGCTCACATAGCAATGGCAACAGA
TGCGGGTGTCCCCGTGTGGTGATCGCCACCTTCTTCTCCAGTACAAGCGA
GAGCCATAGCCTAGTCATGGTCTGAGGGCTCATCCCCAACAACAAGAGCC
GGTCCAGGCACTCATCATCAGGTAAGGGGCTACCAAGTGGCCAGCCGTAG
CTCAGGAGGTCAGATGTCTCTTGTTCTTGTCTTCTTTTCTGTGTTATCAG
CAAGCCGCTTCCTCTTTCTCCTCTTCCTCCGCTTTCCCCCCGGGCAATGT
CAGCACCACGAGGCAATGAAACTTCAACTCTCACACCCGGCAAGGGCACC
GGAAGCCCTTGCACAATCAATGTTTCTACAGCTATTGCGCTGGGATGTTG
AATCAAATAACGCAACAAAGTCCTGGCTGCGGCAAAGGACGGAAAAGAAC
TCTCTAACAGAAGGACTGGTGCGGTGGCCTCTTGTCCAGCCTTGGCCAAG
AAGCCGTAATGCCTTCTTCCATCGCCATCTGTGACCACAAGGGTGTGCAC
AGAGGGATAAGGGAATGAAAGCGCGGAGGGAAGGAAGGAGAGAAAGGCCT
GCAGAATTGCTCGGCGATGGGCTGAGCGGGAGGGAGGAAGGCAGGCACTC
CCTTTGTAGAAGGACGAGGACGAGGGTGAGGAGGAGGAAGTAGGAACAGG
GACCAGAAGAGCGGCCCAATTAAAAAGACTTGAGGCAGCTGTCCATTCCG
GGCGCTGCGTGGTTTCAATGTTTAGGAGGAGACGCGGCGGTGGGCACAAC
ATAATTTAATTTTTAATTCTCTCACTGTT
back to top

protein sequence of jgi.p|Nanoce1779_2|611598

>mRNA_10461-protein ID=mRNA_10461-protein|Name=jgi.p|Nanoce1779_2|611598|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MSLVLVFFSVLSASRFLFLLFLRFPPGQCQHHEAMKLQLSHPARAPEALA
QSMFLQLLRWDVESNNATKSWLRQRTEKNSLTEGLVRWPLVQPWPRSRNA
FFHRHL*
back to top

mRNA from alignment at scaffold_57:81957..83015+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10461 ID=mRNA_10461|Name=jgi.p|Nanoce1779_2|611598|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp|location=Sequence derived from alignment at scaffold_57:81957..83015+ (Nannochloropsis oceanica)
CCTCCCTCCAGCCCTACTAGCATAGGAAAGGGAACATCGGCCACACAGCC
TGCGAAGTCTAGGCCGGGTGGGAGGGAGGGGATGAAGGCATGCGCCCACG
GTAGAGGCAGAAGCCACGAGAGAAGCAGCTGGAGGGGAGGGAGGGAGGGA
GGGAGGAGGGAGGGAGGAAAAGGGCGTTGTGAGCAGAGAGGGGTGAGGCA
CAGATCTTTTAGACAAGAGTGTCCATCTCTGAACTTCAAAGCCCTCCCTA
TTACCTACCTCACATAGCAATGGCAACAGATGCGGGTGTCCCCGTGTGGT
GATCGCCACCTTCTTCTCCAGTACAAGCGAGAGCCATAGCCTAGTCATGG
TCTGAGGGCTCATCCCCAACAACAAGAGCCGGTCCAGGCACTCATCATCA
GGTAAGGGGCTACCAAGTGGCCAGCCGTAGCTCAGGAGGTCAGATGTCTC
TTGTTCTTGTCTTCTTTTCTGTGTTATCAGCAAGCCGCTTCCTCTTTCTC
CTCTTCCTCCGCTTTCCCCCCGGGCAATGTCAGCACCACGAGGCAATGAA
ACTTCAACTCTCACACCCGGCAAGGGCACCGGAAGCCCTTGCACAATCAA
TGTTTCTACAGCTATTGCGCTGGGATGTTGAATCAAATAACGCAACAAAG
TCCTGGCTGCGGCAAAGGACGGAAAAGAACTCTCTAACAGAAGGACTGGT
GCGGTGGCCTCTTGTCCAGCCTTGGCCAAGAAGCCGTAATGCCTTCTTCC
ATCGCCATCTGTGACCACAAGGGTGTGCACAGAGGGATAAGGGAATGAAA
GCGCGGAGGGAAGGAAGGAGAGAAAGGCCTGCAGAATTGCTCGGCGATGG
GCTGAGCGGGAGGGAGGAAGGCAGGCACTCCCTTTGTAGAAGGACGAGGA
CGAGGGTGAGGAGGAGGAAGTAGGAACAGGGACCAGAAGAGCGGCCCAAT
TAAAAAGACTTGAGGCAGCTGTCCATTCCGGGCGCTGCGTGGTTTCAATG
TTTAGGAGGAGACGCGGCGGTGGGCACAACATAATTTAATTTTTAATTCT
CTCACTGTT
back to top

Coding sequence (CDS) from alignment at scaffold_57:81957..83015+

>mRNA_10461 ID=mRNA_10461|Name=jgi.p|Nanoce1779_2|611598|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_57:81957..83015+ (Nannochloropsis oceanica)
ATGTCTCTTGTTCTTGTCTTCTTTTCTGTGTTATCAGCAAGCCGCTTCCT
CTTTCTCCTCTTCCTCCGCTTTCCCCCCGGGCAATGTCAGCACCACGAGG
CAATGAAACTTCAACTCTCACACCCGGCAAGGGCACCGGAAGCCCTTGCA
CAATCAATGTTTCTACAGCTATTGCGCTGGGATGTTGAATCAAATAACGC
AACAAAGTCCTGGCTGCGGCAAAGGACGGAAAAGAACTCTCTAACAGAAG
GACTGGTGCGGTGGCCTCTTGTCCAGCCTTGGCCAAGAAGCCGTAATGCC
TTCTTCCATCGCCATCTGTGA
back to top
Synonyms
Publications