jgi.p|Nanoce1779_2|611596, mRNA_10460 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611596
Unique NamemRNA_10460
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length736
Alignment locationscaffold_57:80227..81111 +

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Properties
Property NameValue
TranscriptId611682
TrackFilteredModels2
ProteinId611596
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:80227..81111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611596gene_10460Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611596mRNA_10460-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10460CDS_10460Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10460 ID=mRNA_10460|Name=jgi.p|Nanoce1779_2|611596|organism=Nannochloropsis oceanica|type=mRNA|length=736bp
GAGGAGGAGGAGGAGGAGGAGAAGAGGCGGTTGAGAAGTTCGTCCATTGT
GGCGGGGGCTGGACGGTGAGAGCGAGGTTTGTCGCCACTGCTGCTGCTGC
TGCTGCTGCTGCTGCTTGGGGTGGTGGTGGTGGGGTTACTACTACTACTG
CTAATGCCAATCTTGTCGCTGCTGCTACTGCTTCCAGTCTCTCCCACAGC
GCTGTCCGCCTTCTTTCCCTCCTTCGCCTCCTCTCCTGCACTTCCTTTAT
ACCTCATTTCCTCCCACACTCCATGCATAGCCCCCAGGAGGAGAGGGAGG
GAGGGAGGAGGGGTCTCCCGGGCCAAGGCCTGGAAAACGGCCTCAAGCAC
GCCCTCGTCCTCACATAGGCTGCTCGCGGCTAGAGGTGCCTCCTTGCTTT
TGCTGAGGAGGAGCTCCATGCCCTGCGAGTCCATGACTGTCTTTCTTACC
CAGGCGATTGGATCCTCCCCGCCCTCCCGCCATCCCTTCCTCTTGTTCTT
CTTTTTCTGGTGGCTGACGACGCTGAGCTTGCGGTTGTGATTCTGGCTCC
TCTTTAACCGCTCAAAGCCCTTGATCCAGCCCTGTCTGTCTGTGCCCGTG
GATGCACAAAGCCGGTAGTGCTCCGTTCCCCCGGCCAAGTGACAGTCGAA
GACCAGCCCCAGGGGCTCGGCGTTCAAGACTGGGATAAGCGCCGTCAGCG
ACCGCAGGGACAGGCGGAGGAGGGGGAGGGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|611596

>mRNA_10460-protein ID=mRNA_10460-protein|Name=jgi.p|Nanoce1779_2|611596|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MPILSLLLLLPVSPTALSAFFPSFASSPALPLYLISSHTPCIAPRRRGRE
GGGVSRAKAWKTASSTPSSSHRLLAARGASLLLLRRSSMPCESMTVFLTQ
AIGSSPPSRHPFLLFFFFWWLTTLSLRL*
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mRNA from alignment at scaffold_57:80227..81111+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10460 ID=mRNA_10460|Name=jgi.p|Nanoce1779_2|611596|organism=Nannochloropsis oceanica|type=mRNA|length=885bp|location=Sequence derived from alignment at scaffold_57:80227..81111+ (Nannochloropsis oceanica)
GAGGAGGAGGAGGAGGAGGAGAAGAGGCGGTTGAGAAGTTCGTCCATTGT
GGCGGGGGCTGGACGGTGAGAGCGAGGTTTGTCGCCACTGCTGCTGCTGC
TGCTGCTGCTGCTGCTTGGGGTGGTGGTGGTGGGGTTACTACTACTACTG
CTAATGCCAATCTTGTCGCTGCTGCTACTGCTTCCAGTCTCTCCCACAGC
GCTGTCCGCCTTCTTTCCCTCCTTCGCCTCCTCTCCTGCACTTCCTTTAT
ACCTCATTTCCTCCCACACTCCATGCATAGCCCCCAGGAGGAGAGGGAGG
GAGGGAGGAGGGGTCTCCCGGGCCAAGGCCTGGAAAACGGCCTCAAGCAC
GCCCTCGTCCTCACATAGGCTGCTCGCGGCTAGAGGTGCCTCCTTGCTTT
TGCTGAGGAGGAGCTCCATGCCCTGCGGGAGGGAGGGAGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGCGATTGGAGCGTCTAACATCACTTTAAGAATCA
TTAATTGGAATCGCAAACATAAAATCTGGGAATCTTAAACGCATATATAT
ATATATATACACCTTGCTCACCTGCGAGTCCATGACTGTCTTTCTTACCC
AGGCGATTGGATCCTCCCCGCCCTCCCGCCATCCCTTCCTCTTGTTCTTC
TTTTTCTGGTGGCTGACGACGCTGAGCTTGCGGTTGTGATTCTGGCTCCT
CTTTAACCGCTCAAAGCCCTTGATCCAGCCCTGTCTGTCTGTGCCCGTGG
ATGCACAAAGCCGGTAGTGCTCCGTTCCCCCGGCCAAGTGACAGTCGAAG
ACCAGCCCCAGGGGCTCGGCGTTCAAGACTGGGATAAGCGCCGTCAGCGA
CCGCAGGGACAGGCGGAGGAGGGGGAGGGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_57:80227..81111+

>mRNA_10460 ID=mRNA_10460|Name=jgi.p|Nanoce1779_2|611596|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_57:80227..81111+ (Nannochloropsis oceanica)
ATGCCAATCTTGTCGCTGCTGCTACTGCTTCCAGTCTCTCCCACAGCGCT
GTCCGCCTTCTTTCCCTCCTTCGCCTCCTCTCCTGCACTTCCTTTATACC
TCATTTCCTCCCACACTCCATGCATAGCCCCCAGGAGGAGAGGGAGGGAG
GGAGGAGGGGTCTCCCGGGCCAAGGCCTGGAAAACGGCCTCAAGCACGCC
CTCGTCCTCACATAGGCTGCTCGCGGCTAGAGGTGCCTCCTTGCTTTTGC
TGAGGAGGAGCTCCATGCCCTGCGAGTCCATGACTGTCTTTCTTACCCAG
GCGATTGGATCCTCCCCGCCCTCCCGCCATCCCTTCCTCTTGTTCTTCTT
TTTCTGGTGGCTGACGACGCTGAGCTTGCGGTTGTGAATGCCAATCTTGT
CGCTGCTGCTACTGCTTCCAGTCTCTCCCACAGCGCTGTCCGCCTTCTTT
CCCTCCTTCGCCTCCTCTCCTGCACTTCCTTTATACCTCATTTCCTCCCA
CACTCCATGCATAGCCCCCAGGAGGAGAGGGAGGGAGGGAGGAGGGGTCT
CCCGGGCCAAGGCCTGGAAAACGGCCTCAAGCACGCCCTCGTCCTCACAT
AGGCTGCTCGCGGCTAGAGGTGCCTCCTTGCTTTTGCTGAGGAGGAGCTC
CATGCCCTGCGAGTCCATGACTGTCTTTCTTACCCAGGCGATTGGATCCT
CCCCGCCCTCCCGCCATCCCTTCCTCTTGTTCTTCTTTTTCTGGTGGCTG
ACGACGCTGAGCTTGCGGTTGTGA
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Synonyms
Publications