jgi.p|Nanoce1779_2|575125, mRNA_1046 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575125
Unique Name	mRNA_1046
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	942
Alignment location	scaffold_2:1088841..1090514 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575211
Track	FilteredModels2
ProteinId	575125

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1088841..1090514 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575125	gene_1046	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575125	mRNA_1046-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1046	CDS_1046	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1088841..1090514-
coding sequence from alignment at scaffold_2:1088841..1090514-

mRNA sequence

>mRNA_1046 ID=mRNA_1046|Name=jgi.p|Nanoce1779_2|575125|organism=Nannochloropsis oceanica|type=mRNA|length=942bp
ACAGGGCGCGGCGAACCACAACCACGGCTCTGGTCTTCCCACCCATTGCC
TCCCCACCATCACCTACCGGCACGCCTAACGCAGCAGCCATGAGCCAAGC
GTCATTAACCACGGGCCTCTGTATGCCTAAGAATTACGACAGTGTGCACG
CCAGCGTGCTCGGGAACGGTCTGTACACGCAGGAGAAGGTCAAGCCTTTG
GAGGAGTACTTGCTGCAACAGGTGGCGGAGGGGTCTTATGACTTCGAGGC
CAATAAGACCCTGCTCAAGTTGTACCTGCTGTACCCTTCTTTTGCCAACC
AAGAGAAAGTTGAGACGATTCTGCTCAAAGCCCTGCTGAACCTCCCGGCC
ACGGACTTCACCCTCCTTCTCTACATCCTTCCCGAGAAACTTCAGACAGA
TGAAACCGTCCTCACTATCAAGGACGCGGCCGAGGCCTTGGAGACTGCGC
GATATGCCAACTTTTGGTCAATTGTTAATAGCCGGGGGGCAGTCTTTGCT
GCCATTCCCACTTGGAAGGATGACATACGCAAGATCATCTTGGTTGTGCA
CGCTGCCACGTACCAATCAGCAGACAAATCGCACATCGGGGACGGCGTGG
GGCTTTCCGGGGCCGCGCTCGAGACCTTTTTGAAGGCTCAAGCAAATGAT
GGTGTGGTTGCCCGTGTGGTGGAGGACCGCGTGGTTTTTGCATTCAACAA
GGAGAATCAGCCGCGGGTACGGAAATTTAAGGAGACGGTTGACTTGCAAA
ATATGCTGGGAATTTTGAATCGCTTGGCGGCGTAAACAGGGCTTAGTGGA
TAGGCCGAACAGAGGGGCCCAGGGGGAAGAGGAAAGAAATCTGCAGGACA
CTACAGTTAAAGAAAAAGAAAATCAACATCTGCCGTGTCGCGTTGTTGTT
GTTGTGTGGGTACTGGCTTTGCTTTGGCTGCCTGGGGCGACT

protein sequence of jgi.p|Nanoce1779_2|575125

>mRNA_1046-protein ID=mRNA_1046-protein|Name=jgi.p|Nanoce1779_2|575125|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MSQASLTTGLCMPKNYDSVHASVLGNGLYTQEKVKPLEEYLLQQVAEGSY
DFEANKTLLKLYLLYPSFANQEKVETILLKALLNLPATDFTLLLYILPEK
LQTDETVLTIKDAAEALETARYANFWSIVNSRGAVFAAIPTWKDDIRKII
LVVHAATYQSADKSHIGDGVGLSGAALETFLKAQANDGVVARVVEDRVVF
AFNKENQPRVRKFKETVDLQNMLGILNRLAA*

mRNA from alignment at scaffold_2:1088841..1090514-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1046 ID=mRNA_1046|Name=jgi.p|Nanoce1779_2|575125|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp|location=Sequence derived from alignment at scaffold_2:1088841..1090514- (Nannochloropsis oceanica)
ACAGGGCGCGGCGAACCACAACCACGGCTCTGGTCTTCCCACCCATTGCC
TCCCCACCATCACCTACCGGCACGCCTAACGCAGCAGCCATGAGCCAAGC
GTCATTAACCACGGGCCTCTGTATGCCTAAGAATTACGACAGTGTGCACG
CCAGCGTGCTCGGGAACGGTCTGTACACGCAGGAGAAGGTCAAGCCTTTG
GAGGAGTACTTGCTGCAACAGGTGGGTAGATGCCATGGGAGGGTTTGGGA
GGAAGGCATGGGGCTTAAAGATGTGCCTGTTGCATCGAATCCGTCGCTTG
CTGCGCCAATTACGCTTTGAATCGAGAGAAATGTCTTCTATTCTCCATAT
TCTGCCCTGAGAGTTCATTTCCAGATCTCCAGCAAGGCTGTCTCCCCAAT
CACAAACACCTCTCCTACCTATTCACGTTTCTTGTCTCCCCTTTTTCCGT
ATCAGGTGGCGGAGGGGTCTTATGACTTCGAGGCCAATAAGACCCTGCTC
AAGTTGTACCTGCTGTACCCTTCTTTTGCCAACCAAGAGAAAGTTGAGAC
GGTAAGTTTGGAGACCCACGCATGTGGGAAAGAAGGGGGAGGGACTGAAG
ATGGAACAAGCAGTGATTGATAAAATTGAAGAAGAGTTCGAAATACTCGC
AATTTGCAATGCGGGCTTGTGCCTAGCGCGCGTGCAAATATGGTGGAGAC
GTTCACGCTCGCTCGCTCACTTCCTCTTTCCCCGAACAACCATCCCACCA
CTCACAGATTCTGCTCAAAGCCCTGCTGAACCTCCCGGCCACGGACTTCA
CCCTCCTTCTCTACATCCTTCCCGAGAAACTTCAGACAGATGTACGTACG
GACAGGTTAGAGTCGTGTGATTTGCGGAAGAAGCGTCTCTCTCTTGCCTC
CAGTAGGAATAAAAGACGATATCTGTTGCGCGCTTGCTCTGTGTGTGTGC
ATCGCACAGAATTACTCATAGCCACTCATTCATTTTACTGCGTCTTTCGT
ACTCTCCCGTTTCAGGAAACCGTCCTCACTATCAAGGACGCGGCCGAGGC
CTTGGAGACTGCGCGATATGCCAACTTTTGGTCAATTGTTAATAGCCGGG
GGGCAGTCTTTGCTGCCATTCCCACTTGGAAGGATGACATACGCAAGAGT
AAGTGGTTCGGTGAAGGAGGGAAGAATAATCATTGTTTCTTTATTATATG
TACTTTCGTGGTGTAGGGATTTGCCTCTCATACACTCATACCTTTTCCCT
CCCTCCCTCCTCGAAGTCATCTTGGTTGTGCACGCTGCCACGTACCAATC
AGCAGACAAATCGCACATCGGGGACGGCGTGGGGCTTTCCGGGGCCGCGC
TCGAGACCTTTTTGAAGGCTCAAGCAAATGATGGTGTGGTTGCCCGTGTG
GTGGAGGACCGCGTGGTTTTTGCATTCAACAAGGAGAATCAGCCGCGGGT
ACGGAAATTTAAGGAGACGGTTGACTTGCAAAATATGCTGGGAATTTTGA
ATCGCTTGGCGGCGTAAACAGGGCTTAGTGGATAGGCCGAACAGAGGGGC
CCAGGGGGAAGAGGAAAGAAATCTGCAGGACACTACAGTTAAAGAAAAAG
AAAATCAACATCTGCCGTGTCGCGTTGTTGTTGTTGTGTGGGTACTGGCT
TTGCTTTGGCTGCCTGGGGCGACT

Coding sequence (CDS) from alignment at scaffold_2:1088841..1090514-

>mRNA_1046 ID=mRNA_1046|Name=jgi.p|Nanoce1779_2|575125|organism=Nannochloropsis oceanica|type=CDS|length=3480bp|location=Sequence derived from alignment at scaffold_2:1088841..1090514- (Nannochloropsis oceanica)
TCATCTTGGTTGTGCACGCTGCCACGTACCAATCAGCAGACAAATCGCAC
ATCGGGGACGGCGTGGGGCTTTCCGGGGCCGCGCTCGAGACCTTTTTGAA
GGCTCAAGCAAATGATGGTGTGGTTGCCCGTGTGGTGGAGGACCGCGTGG
TTTTTGCATTCAACAAGGAGAATCAGCCGCGGGTACGGAAATTTAAGGAG
ACGGTTGACTTGCAAAATATGCTGGGAATTTTGAATCGCTTGGCGGCGTA
AGAAACCGTCCTCACTATCAAGGACGCGGCCGAGGCCTTGGAGACTGCGC
GATATGCCAACTTTTGGTCAATTGTTAATAGCCGGGGGGCAGTCTTTGCT
GCCATTCCCACTTGGAAGGATGACATACGCAAGAATTCTGCTCAAAGCCC
TGCTGAACCTCCCGGCCACGGACTTCACCCTCCTTCTCTACATCCTTCCC
GAGAAACTTCAGACAGATGTGGCGGAGGGGTCTTATGACTTCGAGGCCAA
TAAGACCCTGCTCAAGTTGTACCTGCTGTACCCTTCTTTTGCCAACCAAG
AGAAAGTTGAGACGATGAGCCAAGCGTCATTAACCACGGGCCTCTGTATG
CCTAAGAATTACGACAGTGTGCACGCCAGCGTGCTCGGGAACGGTCTGTA
CACGCAGGAGAAGGTCAAGCCTTTGGAGGAGTACTTGCTGCAACAGTCAT
CTTGGTTGTGCACGCTGCCACGTACCAATCAGCAGACAAATCGCACATCG
GGGACGGCGTGGGGCTTTCCGGGGCCGCGCTCGAGACCTTTTTGAAGGCT
CAAGCAAATGATGGTGTGGTTGCCCGTGTGGTGGAGGACCGCGTGGTTTT
TGCATTCAACAAGGAGAATCAGCCGCGGGTACGGAAATTTAAGGAGACGG
TTGACTTGCAAAATATGCTGGGAATTTTGAATCGCTTGGCGGCGTAAGAA
ACCGTCCTCACTATCAAGGACGCGGCCGAGGCCTTGGAGACTGCGCGATA
TGCCAACTTTTGGTCAATTGTTAATAGCCGGGGGGCAGTCTTTGCTGCCA
TTCCCACTTGGAAGGATGACATACGCAAGAATTCTGCTCAAAGCCCTGCT
GAACCTCCCGGCCACGGACTTCACCCTCCTTCTCTACATCCTTCCCGAGA
AACTTCAGACAGATGTGGCGGAGGGGTCTTATGACTTCGAGGCCAATAAG
ACCCTGCTCAAGTTGTACCTGCTGTACCCTTCTTTTGCCAACCAAGAGAA
AGTTGAGACGATGAGCCAAGCGTCATTAACCACGGGCCTCTGTATGCCTA
AGAATTACGACAGTGTGCACGCCAGCGTGCTCGGGAACGGTCTGTACACG
CAGGAGAAGGTCAAGCCTTTGGAGGAGTACTTGCTGCAACAGTCATCTTG
GTTGTGCACGCTGCCACGTACCAATCAGCAGACAAATCGCACATCGGGGA
CGGCGTGGGGCTTTCCGGGGCCGCGCTCGAGACCTTTTTGAAGGCTCAAG
CAAATGATGGTGTGGTTGCCCGTGTGGTGGAGGACCGCGTGGTTTTTGCA
TTCAACAAGGAGAATCAGCCGCGGGTACGGAAATTTAAGGAGACGGTTGA
CTTGCAAAATATGCTGGGAATTTTGAATCGCTTGGCGGCGTAAGAAACCG
TCCTCACTATCAAGGACGCGGCCGAGGCCTTGGAGACTGCGCGATATGCC
AACTTTTGGTCAATTGTTAATAGCCGGGGGGCAGTCTTTGCTGCCATTCC
CACTTGGAAGGATGACATACGCAAGAATTCTGCTCAAAGCCCTGCTGAAC
CTCCCGGCCACGGACTTCACCCTCCTTCTCTACATCCTTCCCGAGAAACT
TCAGACAGATGTGGCGGAGGGGTCTTATGACTTCGAGGCCAATAAGACCC
TGCTCAAGTTGTACCTGCTGTACCCTTCTTTTGCCAACCAAGAGAAAGTT
GAGACGATGAGCCAAGCGTCATTAACCACGGGCCTCTGTATGCCTAAGAA
TTACGACAGTGTGCACGCCAGCGTGCTCGGGAACGGTCTGTACACGCAGG
AGAAGGTCAAGCCTTTGGAGGAGTACTTGCTGCAACAGTCATCTTGGTTG
TGCACGCTGCCACGTACCAATCAGCAGACAAATCGCACATCGGGGACGGC
GTGGGGCTTTCCGGGGCCGCGCTCGAGACCTTTTTGAAGGCTCAAGCAAA
TGATGGTGTGGTTGCCCGTGTGGTGGAGGACCGCGTGGTTTTTGCATTCA
ACAAGGAGAATCAGCCGCGGGTACGGAAATTTAAGGAGACGGTTGACTTG
CAAAATATGCTGGGAATTTTGAATCGCTTGGCGGCGTAAGAAACCGTCCT
CACTATCAAGGACGCGGCCGAGGCCTTGGAGACTGCGCGATATGCCAACT
TTTGGTCAATTGTTAATAGCCGGGGGGCAGTCTTTGCTGCCATTCCCACT
TGGAAGGATGACATACGCAAGAATTCTGCTCAAAGCCCTGCTGAACCTCC
CGGCCACGGACTTCACCCTCCTTCTCTACATCCTTCCCGAGAAACTTCAG
ACAGATGTGGCGGAGGGGTCTTATGACTTCGAGGCCAATAAGACCCTGCT
CAAGTTGTACCTGCTGTACCCTTCTTTTGCCAACCAAGAGAAAGTTGAGA
CGATGAGCCAAGCGTCATTAACCACGGGCCTCTGTATGCCTAAGAATTAC
GACAGTGTGCACGCCAGCGTGCTCGGGAACGGTCTGTACACGCAGGAGAA
GGTCAAGCCTTTGGAGGAGTACTTGCTGCAACAGTCATCTTGGTTGTGCA
CGCTGCCACGTACCAATCAGCAGACAAATCGCACATCGGGGACGGCGTGG
GGCTTTCCGGGGCCGCGCTCGAGACCTTTTTGAAGGCTCAAGCAAATGAT
GGTGTGGTTGCCCGTGTGGTGGAGGACCGCGTGGTTTTTGCATTCAACAA
GGAGAATCAGCCGCGGGTACGGAAATTTAAGGAGACGGTTGACTTGCAAA
ATATGCTGGGAATTTTGAATCGCTTGGCGGCGTAAGAAACCGTCCTCACT
ATCAAGGACGCGGCCGAGGCCTTGGAGACTGCGCGATATGCCAACTTTTG
GTCAATTGTTAATAGCCGGGGGGCAGTCTTTGCTGCCATTCCCACTTGGA
AGGATGACATACGCAAGAATTCTGCTCAAAGCCCTGCTGAACCTCCCGGC
CACGGACTTCACCCTCCTTCTCTACATCCTTCCCGAGAAACTTCAGACAG
ATGTGGCGGAGGGGTCTTATGACTTCGAGGCCAATAAGACCCTGCTCAAG
TTGTACCTGCTGTACCCTTCTTTTGCCAACCAAGAGAAAGTTGAGACGAT
GAGCCAAGCGTCATTAACCACGGGCCTCTGTATGCCTAAGAATTACGACA
GTGTGCACGCCAGCGTGCTCGGGAACGGTCTGTACACGCAGGAGAAGGTC
AAGCCTTTGGAGGAGTACTTGCTGCAACAG

Synonyms

Publications