jgi.p|Nanoce1779_2|354168, mRNA_10458 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|354168
Unique Name	mRNA_10458
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	938
Alignment location	scaffold_57:72475..74436 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	354254
Track	FilteredModels2
ProteinId	354168

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_57	supercontig	scaffold_57:72475..74436 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|354168	gene_10458	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|354168	mRNA_10458-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10458	CDS_10458	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_57:72475..74436+
coding sequence from alignment at scaffold_57:72475..74436+

mRNA sequence

>mRNA_10458 ID=mRNA_10458|Name=jgi.p|Nanoce1779_2|354168|organism=Nannochloropsis oceanica|type=mRNA|length=938bp
CCGTCTCTGCGGGGAGAAGGGAGGGAGGACAGGAGGGAGGACGGGGAAGG
GGAGAAGGAGAAGAAGGAGGGGAAGGAGAACAAAGAGGGGCTGGTGGCGG
TGGCGATGGACGTAAAGGAGGAGGAGGAGGAGGAGAAGCAGGGAGCATGC
GTGTGGAGGAGGAGGAAGGCCAAGCCCACGTACAGCCCTGCGCTCGAGTA
CTTCTTTCGGAAGGTGATGCTCCTAGCGGCCCAGAAGATCCATGTGCTGG
GCAAGTGCCTCGAGCTGCCTGGAGCTACCTTAGACAAAATATGGACAGCC
TTCAAGCACGCCCTCGGCACCCGCGTCGTTACCCTCCTCCCCGATCGTCA
CCTCGACCACGTCATTCTCTGCTCCATCTACGCCATCTGCAAGGTGGTCA
AGCACCGGCCCGAGGCCACGTTCAAGCGCATCCTGGAGGCTCATCGGCGT
CTGCCCTACCCCCTCCTTTCCTCTGCAAGTGGAGGAGGAGGAGGAGGGGG
GGGGGGGACGTCAGCAGCTGCAGCCCGCAATGCGTTTGGCGTTATTAAGC
CCTATATACTCCAGTTCGCGTCCTCGTCCTCCCTTCCTTCCTCCTCCTCC
TCCTCCTCCTCCATCCCTTCCTCCACCTCTCCGACTGCGATACAAAAGGA
GGAGGGAAGGAGAGCGGGAAGGAGGGCAGGAGGGAGGGCAGGAGTGTCTC
CTCCCGTGGAAAAGCCGTCATCGCCCATGTCGCCGCTGCCAAAGAGGAGG
GAGGAGGAAGGAGGAGGCAGTGGTGGTGGTGGCGGTGGTGGAGGAAGAGG
AGGAGAAGGAGGAGAAGGAGGAGATGACAGAGTGGGAGCAGGCCCAAGTG
AGTGACTTTCTGGGATGTTTCTCGTCCGGCGCGTTCTTCTCCCCTCCCGT
TGTCGATCTTCTTACTCTCTTGCCCCTGCTTACCCTCC

protein sequence of jgi.p|Nanoce1779_2|354168

>mRNA_10458-protein ID=mRNA_10458-protein|Name=jgi.p|Nanoce1779_2|354168|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MDVKEEEEEEKQGACVWRRRKAKPTYSPALEYFFRKVMLLAAQKIHVLGK
CLELPGATLDKIWTAFKHALGTRVVTLLPDRHLDHVILCSIYAICKVVKH
RPEATFKRILEAHRRLPYPLLSSASGGGGGGGGGTSAAAARNAFGVIKPY
ILQFASSSSLPSSSSSSSSIPSSTSPTAIQKEEGRRAGRRAGGRAGVSPP
VEKPSSPMSPLPKRREEEGGGSGGGGGGGGRGGEGGEGGDDRVGAGPSE*

mRNA from alignment at scaffold_57:72475..74436+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10458 ID=mRNA_10458|Name=jgi.p|Nanoce1779_2|354168|organism=Nannochloropsis oceanica|type=mRNA|length=1962bp|location=Sequence derived from alignment at scaffold_57:72475..74436+ (Nannochloropsis oceanica)
CCGTCTCTGCGGGGAGAAGGGAGGGAGGACAGGAGGGAGGACGGGGAAGG
GGAGAAGGAGAAGAAGGAGGGGAAGGAGAACAAAGAGGGGCTGGTGGCGG
TGGCGATGGACGTAAAGGAGGAGGAGGAGGAGGAGAAGCAGGGAGCATGC
GTGTGGAGGAGGAGGAAGGCCAAGCCCACGTACAGCCCTGCGCTCGAGTA
CTTCTTTCGGAAGGTCAGGGGAGACCGCCCGCCCTCCCTCCCTCCCTCGC
TGTCCCCTCCATTTAATCTGCGCATCTTTGACAATTAAACCAACACACAC
CCTCCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGC
TCGCTCCAGGTGATGCTCCTAGCGGCCCAGAAGATCCATGTGCTGGGCAA
GTGCCTCGAGGTATTCCCTCCCTCCCTCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTTTACCCCTTCCCTC
TTGTCTCGCCCCGTCTTCTCCCTCCTCTCTCCATCTAACCTCCCACTCCT
CTCTCGTTTCCATTTTCTGCCCTCCCTCCCTGCCCCCCTCCAGCTGCCTG
GAGCTACCTTAGACAAAATATGGACAGCCTTCAAGCACGCCCTCGGCACC
CGCGTCGTACGTCACGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGGTA
GCCTGCCCACACCACTTTTCTCTTTGTCGTTTATCTTGTCTTCTCCCCCT
TTCTCTCTTCTTTCCTCCCTCCTCTCTTCTTTTCTCTGCCGCCCCGCTCC
TCCTTTCCATCACATCAACCCTCCCTCCCTCCCTCCCTCCCTCAGGTTAC
CCTCCTCCCCGATCGTCACCTCGACCACGTCATTCTCTGCTCCATCTACG
CCATCTGCAAGGTAGACCCTTCGTCTCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTTGCACGCCATGTGACAATTTCCCTCGCCCATCCCCCTCCT
TTTCCCCCTCCTTCTCTCCCTCCCTCGATTTTCCTCTGTTCCCGTCCGAG
TCCCCATAACATCTCGCAATCCTTCACACTCAATCTTTCCCTCCTTCCTC
CCTTCCTCCCTTCCTCAGGTGGTCAAGCACCGGCCCGAGGCCACGTTCAA
GCGCATCCTGGAGGCTCATCGGCGTCTGCCCTACCCCCTCCTTTCCTCTG
CAAGTGGAGGAGGAGGAGGAGGGGGGGGGGGGACGTCAGCAGCTGCAGCC
CGCAATGCGTTTGGCGTTATTAAGGTAAGGCCTCTCTTTCCGCCTGTTGC
TCCCTCCCTCCCTCCCTCCCGCCCTCTTTCCCTCCCTCTCTCCCTCTTGC
TTGACACTCGCCGGAAATCCTCTTCATGTGTGTGATTTCCTCCCTCCCTT
CCTCTCTCTCTCCCTTCCTCTCTCCCTCCCTCCCTCCCTCCTTCCCAGGA
CATCCCCCTGCCCAACAATAAGGAGGGCGACATCATCCAGTACTACAACC
TCCTCTTCCTCCCTTCTCTCAAGCCCTATATACTCCAGTTCGCGTCCTCG
TCCTCCCTTCCTTCCTCCTCCTCCTCCTCCTCCTCCATCCCTTCCTCCAC
CTCTCCGACTGCGATACAAAAGGAGGAGGGAAGGAGAGCGGGAAGGAGGG
CAGGAGGGAGGGCAGGAGTGTCTCCTCCCGTGGAAAAGCCGTCATCGCCC
ATGTCGCCGCTGCCAAAGAGGAGGGAGGAGGAAGGAGGAGGCAGTGGTGG
TGGTGGCGGTGGTGGAGGAAGAGGAGGAGAAGGAGGAGAAGGAGGAGATG
ACAGAGTGGGAGCAGGCCCAAGTGAGTGACTTTCTGGGATGTTTCTCGTC
CGGCGCGTTCTTCTCCCCTCCCGTTGTCGATCTTCTTACTCTCTTGCCCC
TGCTTACCCTCC

Coding sequence (CDS) from alignment at scaffold_57:72475..74436+

>mRNA_10458 ID=mRNA_10458|Name=jgi.p|Nanoce1779_2|354168|organism=Nannochloropsis oceanica|type=CDS|length=4500bp|location=Sequence derived from alignment at scaffold_57:72475..74436+ (Nannochloropsis oceanica)
ATGGACGTAAAGGAGGAGGAGGAGGAGGAGAAGCAGGGAGCATGCGTGTG
GAGGAGGAGGAAGGCCAAGCCCACGTACAGCCCTGCGCTCGAGTACTTCT
TTCGGAAGGTGATGCTCCTAGCGGCCCAGAAGATCCATGTGCTGGGCAAG
TGCCTCGAGCTGCCTGGAGCTACCTTAGACAAAATATGGACAGCCTTCAA
GCACGCCCTCGGCACCCGCGTCGTTACCCTCCTCCCCGATCGTCACCTCG
ACCACGTCATTCTCTGCTCCATCTACGCCATCTGCAAGGTGGTCAAGCAC
CGGCCCGAGGCCACGTTCAAGCGCATCCTGGAGGCTCATCGGCGTCTGCC
CTACCCCCTCCTTTCCTCTGCAAGTGGAGGAGGAGGAGGAGGGGGGGGGG
GGACGTCAGCAGCTGCAGCCCGCAATGCGTTTGGCGTTATTAAGCCCTAT
ATACTCCAGTTCGCGTCCTCGTCCTCCCTTCCTTCCTCCTCCTCCTCCTC
CTCCTCCATCCCTTCCTCCACCTCTCCGACTGCGATACAAAAGGAGGAGG
GAAGGAGAGCGGGAAGGAGGGCAGGAGGGAGGGCAGGAGTGTCTCCTCCC
GTGGAAAAGCCGTCATCGCCCATGTCGCCGCTGCCAAAGAGGAGGGAGGA
GGAAGGAGGAGGCAGTGGTGGTGGTGGCGGTGGTGGAGGAAGAGGAGGAG
AAGGAGGAGAAGGAGGAGATGACAGAGTGGGAGCAGGCCCAAGTGAGTGA
ATGGACGTAAAGGAGGAGGAGGAGGAGGAGAAGCAGGGAGCATGCGTGTG
GAGGAGGAGGAAGGCCAAGCCCACGTACAGCCCTGCGCTCGAGTACTTCT
TTCGGAAGGTGATGCTCCTAGCGGCCCAGAAGATCCATGTGCTGGGCAAG
TGCCTCGAGCTGCCTGGAGCTACCTTAGACAAAATATGGACAGCCTTCAA
GCACGCCCTCGGCACCCGCGTCGTTACCCTCCTCCCCGATCGTCACCTCG
ACCACGTCATTCTCTGCTCCATCTACGCCATCTGCAAGGTGGTCAAGCAC
CGGCCCGAGGCCACGTTCAAGCGCATCCTGGAGGCTCATCGGCGTCTGCC
CTACCCCCTCCTTTCCTCTGCAAGTGGAGGAGGAGGAGGAGGGGGGGGGG
GGACGTCAGCAGCTGCAGCCCGCAATGCGTTTGGCGTTATTAAGCCCTAT
ATACTCCAGTTCGCGTCCTCGTCCTCCCTTCCTTCCTCCTCCTCCTCCTC
CTCCTCCATCCCTTCCTCCACCTCTCCGACTGCGATACAAAAGGAGGAGG
GAAGGAGAGCGGGAAGGAGGGCAGGAGGGAGGGCAGGAGTGTCTCCTCCC
GTGGAAAAGCCGTCATCGCCCATGTCGCCGCTGCCAAAGAGGAGGGAGGA
GGAAGGAGGAGGCAGTGGTGGTGGTGGCGGTGGTGGAGGAAGAGGAGGAG
AAGGAGGAGAAGGAGGAGATGACAGAGTGGGAGCAGGCCCAAGTGAGTGA
ATGGACGTAAAGGAGGAGGAGGAGGAGGAGAAGCAGGGAGCATGCGTGTG
GAGGAGGAGGAAGGCCAAGCCCACGTACAGCCCTGCGCTCGAGTACTTCT
TTCGGAAGGTGATGCTCCTAGCGGCCCAGAAGATCCATGTGCTGGGCAAG
TGCCTCGAGCTGCCTGGAGCTACCTTAGACAAAATATGGACAGCCTTCAA
GCACGCCCTCGGCACCCGCGTCGTTACCCTCCTCCCCGATCGTCACCTCG
ACCACGTCATTCTCTGCTCCATCTACGCCATCTGCAAGGTGGTCAAGCAC
CGGCCCGAGGCCACGTTCAAGCGCATCCTGGAGGCTCATCGGCGTCTGCC
CTACCCCCTCCTTTCCTCTGCAAGTGGAGGAGGAGGAGGAGGGGGGGGGG
GGACGTCAGCAGCTGCAGCCCGCAATGCGTTTGGCGTTATTAAGCCCTAT
ATACTCCAGTTCGCGTCCTCGTCCTCCCTTCCTTCCTCCTCCTCCTCCTC
CTCCTCCATCCCTTCCTCCACCTCTCCGACTGCGATACAAAAGGAGGAGG
GAAGGAGAGCGGGAAGGAGGGCAGGAGGGAGGGCAGGAGTGTCTCCTCCC
GTGGAAAAGCCGTCATCGCCCATGTCGCCGCTGCCAAAGAGGAGGGAGGA
GGAAGGAGGAGGCAGTGGTGGTGGTGGCGGTGGTGGAGGAAGAGGAGGAG
AAGGAGGAGAAGGAGGAGATGACAGAGTGGGAGCAGGCCCAAGTGAGTGA
ATGGACGTAAAGGAGGAGGAGGAGGAGGAGAAGCAGGGAGCATGCGTGTG
GAGGAGGAGGAAGGCCAAGCCCACGTACAGCCCTGCGCTCGAGTACTTCT
TTCGGAAGGTGATGCTCCTAGCGGCCCAGAAGATCCATGTGCTGGGCAAG
TGCCTCGAGCTGCCTGGAGCTACCTTAGACAAAATATGGACAGCCTTCAA
GCACGCCCTCGGCACCCGCGTCGTTACCCTCCTCCCCGATCGTCACCTCG
ACCACGTCATTCTCTGCTCCATCTACGCCATCTGCAAGGTGGTCAAGCAC
CGGCCCGAGGCCACGTTCAAGCGCATCCTGGAGGCTCATCGGCGTCTGCC
CTACCCCCTCCTTTCCTCTGCAAGTGGAGGAGGAGGAGGAGGGGGGGGGG
GGACGTCAGCAGCTGCAGCCCGCAATGCGTTTGGCGTTATTAAGCCCTAT
ATACTCCAGTTCGCGTCCTCGTCCTCCCTTCCTTCCTCCTCCTCCTCCTC
CTCCTCCATCCCTTCCTCCACCTCTCCGACTGCGATACAAAAGGAGGAGG
GAAGGAGAGCGGGAAGGAGGGCAGGAGGGAGGGCAGGAGTGTCTCCTCCC
GTGGAAAAGCCGTCATCGCCCATGTCGCCGCTGCCAAAGAGGAGGGAGGA
GGAAGGAGGAGGCAGTGGTGGTGGTGGCGGTGGTGGAGGAAGAGGAGGAG
AAGGAGGAGAAGGAGGAGATGACAGAGTGGGAGCAGGCCCAAGTGAGTGA
ATGGACGTAAAGGAGGAGGAGGAGGAGGAGAAGCAGGGAGCATGCGTGTG
GAGGAGGAGGAAGGCCAAGCCCACGTACAGCCCTGCGCTCGAGTACTTCT
TTCGGAAGGTGATGCTCCTAGCGGCCCAGAAGATCCATGTGCTGGGCAAG
TGCCTCGAGCTGCCTGGAGCTACCTTAGACAAAATATGGACAGCCTTCAA
GCACGCCCTCGGCACCCGCGTCGTTACCCTCCTCCCCGATCGTCACCTCG
ACCACGTCATTCTCTGCTCCATCTACGCCATCTGCAAGGTGGTCAAGCAC
CGGCCCGAGGCCACGTTCAAGCGCATCCTGGAGGCTCATCGGCGTCTGCC
CTACCCCCTCCTTTCCTCTGCAAGTGGAGGAGGAGGAGGAGGGGGGGGGG
GGACGTCAGCAGCTGCAGCCCGCAATGCGTTTGGCGTTATTAAGCCCTAT
ATACTCCAGTTCGCGTCCTCGTCCTCCCTTCCTTCCTCCTCCTCCTCCTC
CTCCTCCATCCCTTCCTCCACCTCTCCGACTGCGATACAAAAGGAGGAGG
GAAGGAGAGCGGGAAGGAGGGCAGGAGGGAGGGCAGGAGTGTCTCCTCCC
GTGGAAAAGCCGTCATCGCCCATGTCGCCGCTGCCAAAGAGGAGGGAGGA
GGAAGGAGGAGGCAGTGGTGGTGGTGGCGGTGGTGGAGGAAGAGGAGGAG
AAGGAGGAGAAGGAGGAGATGACAGAGTGGGAGCAGGCCCAAGTGAGTGA
ATGGACGTAAAGGAGGAGGAGGAGGAGGAGAAGCAGGGAGCATGCGTGTG
GAGGAGGAGGAAGGCCAAGCCCACGTACAGCCCTGCGCTCGAGTACTTCT
TTCGGAAGGTGATGCTCCTAGCGGCCCAGAAGATCCATGTGCTGGGCAAG
TGCCTCGAGCTGCCTGGAGCTACCTTAGACAAAATATGGACAGCCTTCAA
GCACGCCCTCGGCACCCGCGTCGTTACCCTCCTCCCCGATCGTCACCTCG
ACCACGTCATTCTCTGCTCCATCTACGCCATCTGCAAGGTGGTCAAGCAC
CGGCCCGAGGCCACGTTCAAGCGCATCCTGGAGGCTCATCGGCGTCTGCC
CTACCCCCTCCTTTCCTCTGCAAGTGGAGGAGGAGGAGGAGGGGGGGGGG
GGACGTCAGCAGCTGCAGCCCGCAATGCGTTTGGCGTTATTAAGCCCTAT
ATACTCCAGTTCGCGTCCTCGTCCTCCCTTCCTTCCTCCTCCTCCTCCTC
CTCCTCCATCCCTTCCTCCACCTCTCCGACTGCGATACAAAAGGAGGAGG
GAAGGAGAGCGGGAAGGAGGGCAGGAGGGAGGGCAGGAGTGTCTCCTCCC
GTGGAAAAGCCGTCATCGCCCATGTCGCCGCTGCCAAAGAGGAGGGAGGA
GGAAGGAGGAGGCAGTGGTGGTGGTGGCGGTGGTGGAGGAAGAGGAGGAG
AAGGAGGAGAAGGAGGAGATGACAGAGTGGGAGCAGGCCCAAGTGAGTGA

Synonyms

Publications