jgi.p|Nanoce1779_2|634138, mRNA_10457 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|634138
Unique Name	mRNA_10457
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	868
Alignment location	scaffold_57:66636..68306 +

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Properties


Property Name	Value
TranscriptId	634224
Track	FilteredModels2
ProteinId	634138

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_57	supercontig	scaffold_57:66636..68306 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634138	gene_10457	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634138	mRNA_10457-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10457	CDS_10457	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_57:66636..68306+
coding sequence from alignment at scaffold_57:66636..68306+

mRNA sequence

>mRNA_10457 ID=mRNA_10457|Name=jgi.p|Nanoce1779_2|634138|organism=Nannochloropsis oceanica|type=mRNA|length=868bp
ACAGAGATGCCAACACATAGGATAGATCCCGTGGCCCAGGCCTGCTTCGA
TGAGGTGACGGTGGCTCTGGGCGAGGGGGAAGGATCCGTCAAGACCAAGG
CTCGAGAGTATCTCGCCGATATCCTGGCCCTCCGCATCCCGCCCGATACG
CACCGCCCCGGCCCCTGGCTGTGGGTGGCCTGCAGTGTTTTGATGGCCCT
GTTTGAAGGGGGCATGCCCGGGGGCAAGACGTTGGGGGACGTGCTCAAGG
CGACGGGCCTTAGGCCGTTAGAATTCGATGATTTTCTTGCGCATCTAGCC
CTCCTCTCTCAGCGGCTGGAGGGACTCTCAGATGACGTAAGGGAGCTGGC
GGGAAGCCTCAGGCAGAGTTGGAATGAGACGTCATGCGTCTACTCTAAGT
ACGTCCAGCTGTGGAGCCACCGTCACAAGGTGTCACCCGTGGGCCTTCCC
TCCCTCGGGGATGACGACCGCATTATGCCCGGTGCTTTCAGCTTCGGCTG
GTATTTGTACATTAATGTGAACCAGGACAAGGACCTGGTGGCATCCTTCC
ACGTCATGCTGGCCAGCCTCGAGTTCGTCCTGCGGCATGCCAAGGGCAAG
GGAGAGGGCGAGAGTGCGGGGGAAGGGAGGATAGATGGGGGGGCAAGGAG
CACTCTGAAAAGTGAAGTTCAAAAGTAAGGGATATGAGGAGGGGAGGCAG
GGAAGGGAGGGAGGCAGGGAAAGGAGGGATGGCACCCGTGTATTCACACC
TCTTAATTTGTTCATCTCTTCATTTACTCATCGGTTCATCGATGTTGTTA
TTATTTCATTACTGATAATTGATTAGCTGACTCATGGATTCATGCCCTCG
CCCTCTCACTCTTTCCAT

protein sequence of jgi.p|Nanoce1779_2|634138

>mRNA_10457-protein ID=mRNA_10457-protein|Name=jgi.p|Nanoce1779_2|634138|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MPTHRIDPVAQACFDEVTVALGEGEGSVKTKAREYLADILALRIPPDTHR
PGPWLWVACSVLMALFEGGMPGGKTLGDVLKATGLRPLEFDDFLAHLALL
SQRLEGLSDDVRELAGSLRQSWNETSCVYSKYVQLWSHRHKVSPVGLPSL
GDDDRIMPGAFSFGWYLYINVNQDKDLVASFHVMLASLEFVLRHAKGKGE
GESAGEGRIDGGARSTLKSEVQK*

mRNA from alignment at scaffold_57:66636..68306+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10457 ID=mRNA_10457|Name=jgi.p|Nanoce1779_2|634138|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp|location=Sequence derived from alignment at scaffold_57:66636..68306+ (Nannochloropsis oceanica)
ACAGAGATGCCAACACATAGGATAGATCCCGTGGCCCAGGCCTGCTTCGA
TGAGGTGACGGTGGCTCTGGGCGAGGGGGAAGGATCCGTCAAGACCAAGG
CTCGAGAGGTACGTTCTAGCTCTGGAGGTAGGGACAAAGAACATCGTCGG
TCGAGGTGGTGACGATGGCGAGAAAGAGGGGGTGGATGTTATACCTCATA
TATCCGATGCGGTGCCTACTCTTCTTATCCTCAGCACAACCCCTCTCTCC
TTCCCTCAGTATCTCGCCGATATCCTGGCCCTCCGCATCCCGCCCGATAC
GCACCGCCCCGGCCCCTGGCTGTGGGTGGCCTGCAGTGTTTTGATGGCCC
TGTTTGAAGGGGGCATGCCCGGGGGCAAGACGTTGGGGGACGTGCTCAAG
GTAATGGTAAAGGAGGGCAAGGAAGGTCTGAAGGGAGGGAGGGAGGGAGG
AGTGTCTGCACATATACTCCCATGCATTCATTCATCTGACAACATGTCAA
TGCAGGCGACGGGCCTTAGGCCGTTAGAATTCGATGATTTTCTTGCGCAT
CTAGCCCTCCTCTCTCAGCGGCTGGAGGGACTCTCAGATGACGTAAGGGA
GCTGGCGGGAAGCCTCAGGTAGGGAAGGAGGGATGGAGGGAGGGAGCGCG
GGAGGGAGGAGTTCACGGCGGGGGATGGTTGAATTGCCTCAGAGAGGACT
CAGAGAGGAAATCCGAGGAGAAAAAGCATAGTCTATCGTTGTTTCTGACT
TTGTCGTACTCACCGCCACCTATGTTTGTGTTGTGTTGTGAACAGGCAGA
GTTGGAATGAGACGTCATGCGTCTACTCTAAGTACGTCCAGCTGTGGAGC
CACCGTCACAAGTAAGAAGAGAGGGGGGGAGATAGGGGGGTAGGGAGAGA
GAGGAGGCAATACGTTGGGTCCTTGAAAAGGCGATCAAGCAGCCAAGCAG
CCAGACTCTCACACTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCT
TTCTCCCCTCAGGGTGTCACCCGTGGGCCTTCCCTCCCTCGGGGATGACG
ACCGCATTATGCCCGGTGCTTTCAGCTTCGGCTGGTATTTGTACATTAAT
GTGAACCAGGACAAGGTGGGTAGGGAGGTCGGGAAGGCGGGAGGAAAGGA
GGGAGGTGGAAGGGGGGGAGGGAGGGATGGAACACCACTAGCACGGTAGT
GACCCACCACCCTCTCTCCTTGAGGACATGGTCGCTATATCGTTCACGAC
ACCCTCGTTCGTGATGCCCTTCTCCATGGCGCCCTCATCCATGATCCTCC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGACCTGGTGGCATCCT
TCCACGTCATGCTGGCCAGCCTCGAGTTCGTCCTGCGGCATGCCAAGGGC
AAGGGAGAGGGCGAGAGTGCGGGGGAAGGGAGGATAGATGGGGGGGCAAG
GAGCACTCTGAAAAGTGAAGTTCAAAAGTAAGGGATATGAGGAGGGGAGG
CAGGGAAGGGAGGGAGGCAGGGAAAGGAGGGATGGCACCCGTGTATTCAC
ACCTCTTAATTTGTTCATCTCTTCATTTACTCATCGGTTCATCGATGTTG
TTATTATTTCATTACTGATAATTGATTAGCTGACTCATGGATTCATGCCC
TCGCCCTCTCACTCTTTCCAT

Coding sequence (CDS) from alignment at scaffold_57:66636..68306+

>mRNA_10457 ID=mRNA_10457|Name=jgi.p|Nanoce1779_2|634138|organism=Nannochloropsis oceanica|type=CDS|length=4032bp|location=Sequence derived from alignment at scaffold_57:66636..68306+ (Nannochloropsis oceanica)
ATGCCAACACATAGGATAGATCCCGTGGCCCAGGCCTGCTTCGATGAGGT
GACGGTGGCTCTGGGCGAGGGGGAAGGATCCGTCAAGACCAAGGCTCGAG
AGTATCTCGCCGATATCCTGGCCCTCCGCATCCCGCCCGATACGCACCGC
CCCGGCCCCTGGCTGTGGGTGGCCTGCAGTGTTTTGATGGCCCTGTTTGA
AGGGGGCATGCCCGGGGGCAAGACGTTGGGGGACGTGCTCAAGGCGACGG
GCCTTAGGCCGTTAGAATTCGATGATTTTCTTGCGCATCTAGCCCTCCTC
TCTCAGCGGCTGGAGGGACTCTCAGATGACGTAAGGGAGCTGGCGGGAAG
CCTCAGGCAGAGTTGGAATGAGACGTCATGCGTCTACTCTAAGTACGTCC
AGCTGTGGAGCCACCGTCACAAGGTGTCACCCGTGGGCCTTCCCTCCCTC
GGGGATGACGACCGCATTATGCCCGGTGCTTTCAGCTTCGGCTGGTATTT
GTACATTAATGTGAACCAGGACAAGGACCTGGTGGCATCCTTCCACGTCA
TGCTGGCCAGCCTCGAGTTCGTCCTGCGGCATGCCAAGGGCAAGGGAGAG
GGCGAGAGTGCGGGGGAAGGGAGGATAGATGGGGGGGCAAGGAGCACTCT
GAAAAGTGAAGTTCAAAAGTAAATGCCAACACATAGGATAGATCCCGTGG
CCCAGGCCTGCTTCGATGAGGTGACGGTGGCTCTGGGCGAGGGGGAAGGA
TCCGTCAAGACCAAGGCTCGAGAGTATCTCGCCGATATCCTGGCCCTCCG
CATCCCGCCCGATACGCACCGCCCCGGCCCCTGGCTGTGGGTGGCCTGCA
GTGTTTTGATGGCCCTGTTTGAAGGGGGCATGCCCGGGGGCAAGACGTTG
GGGGACGTGCTCAAGGCGACGGGCCTTAGGCCGTTAGAATTCGATGATTT
TCTTGCGCATCTAGCCCTCCTCTCTCAGCGGCTGGAGGGACTCTCAGATG
ACGTAAGGGAGCTGGCGGGAAGCCTCAGGCAGAGTTGGAATGAGACGTCA
TGCGTCTACTCTAAGTACGTCCAGCTGTGGAGCCACCGTCACAAGGTGTC
ACCCGTGGGCCTTCCCTCCCTCGGGGATGACGACCGCATTATGCCCGGTG
CTTTCAGCTTCGGCTGGTATTTGTACATTAATGTGAACCAGGACAAGGAC
CTGGTGGCATCCTTCCACGTCATGCTGGCCAGCCTCGAGTTCGTCCTGCG
GCATGCCAAGGGCAAGGGAGAGGGCGAGAGTGCGGGGGAAGGGAGGATAG
ATGGGGGGGCAAGGAGCACTCTGAAAAGTGAAGTTCAAAAGTAAATGCCA
ACACATAGGATAGATCCCGTGGCCCAGGCCTGCTTCGATGAGGTGACGGT
GGCTCTGGGCGAGGGGGAAGGATCCGTCAAGACCAAGGCTCGAGAGTATC
TCGCCGATATCCTGGCCCTCCGCATCCCGCCCGATACGCACCGCCCCGGC
CCCTGGCTGTGGGTGGCCTGCAGTGTTTTGATGGCCCTGTTTGAAGGGGG
CATGCCCGGGGGCAAGACGTTGGGGGACGTGCTCAAGGCGACGGGCCTTA
GGCCGTTAGAATTCGATGATTTTCTTGCGCATCTAGCCCTCCTCTCTCAG
CGGCTGGAGGGACTCTCAGATGACGTAAGGGAGCTGGCGGGAAGCCTCAG
GCAGAGTTGGAATGAGACGTCATGCGTCTACTCTAAGTACGTCCAGCTGT
GGAGCCACCGTCACAAGGTGTCACCCGTGGGCCTTCCCTCCCTCGGGGAT
GACGACCGCATTATGCCCGGTGCTTTCAGCTTCGGCTGGTATTTGTACAT
TAATGTGAACCAGGACAAGGACCTGGTGGCATCCTTCCACGTCATGCTGG
CCAGCCTCGAGTTCGTCCTGCGGCATGCCAAGGGCAAGGGAGAGGGCGAG
AGTGCGGGGGAAGGGAGGATAGATGGGGGGGCAAGGAGCACTCTGAAAAG
TGAAGTTCAAAAGTAAATGCCAACACATAGGATAGATCCCGTGGCCCAGG
CCTGCTTCGATGAGGTGACGGTGGCTCTGGGCGAGGGGGAAGGATCCGTC
AAGACCAAGGCTCGAGAGTATCTCGCCGATATCCTGGCCCTCCGCATCCC
GCCCGATACGCACCGCCCCGGCCCCTGGCTGTGGGTGGCCTGCAGTGTTT
TGATGGCCCTGTTTGAAGGGGGCATGCCCGGGGGCAAGACGTTGGGGGAC
GTGCTCAAGGCGACGGGCCTTAGGCCGTTAGAATTCGATGATTTTCTTGC
GCATCTAGCCCTCCTCTCTCAGCGGCTGGAGGGACTCTCAGATGACGTAA
GGGAGCTGGCGGGAAGCCTCAGGCAGAGTTGGAATGAGACGTCATGCGTC
TACTCTAAGTACGTCCAGCTGTGGAGCCACCGTCACAAGGTGTCACCCGT
GGGCCTTCCCTCCCTCGGGGATGACGACCGCATTATGCCCGGTGCTTTCA
GCTTCGGCTGGTATTTGTACATTAATGTGAACCAGGACAAGGACCTGGTG
GCATCCTTCCACGTCATGCTGGCCAGCCTCGAGTTCGTCCTGCGGCATGC
CAAGGGCAAGGGAGAGGGCGAGAGTGCGGGGGAAGGGAGGATAGATGGGG
GGGCAAGGAGCACTCTGAAAAGTGAAGTTCAAAAGTAAATGCCAACACAT
AGGATAGATCCCGTGGCCCAGGCCTGCTTCGATGAGGTGACGGTGGCTCT
GGGCGAGGGGGAAGGATCCGTCAAGACCAAGGCTCGAGAGTATCTCGCCG
ATATCCTGGCCCTCCGCATCCCGCCCGATACGCACCGCCCCGGCCCCTGG
CTGTGGGTGGCCTGCAGTGTTTTGATGGCCCTGTTTGAAGGGGGCATGCC
CGGGGGCAAGACGTTGGGGGACGTGCTCAAGGCGACGGGCCTTAGGCCGT
TAGAATTCGATGATTTTCTTGCGCATCTAGCCCTCCTCTCTCAGCGGCTG
GAGGGACTCTCAGATGACGTAAGGGAGCTGGCGGGAAGCCTCAGGCAGAG
TTGGAATGAGACGTCATGCGTCTACTCTAAGTACGTCCAGCTGTGGAGCC
ACCGTCACAAGGTGTCACCCGTGGGCCTTCCCTCCCTCGGGGATGACGAC
CGCATTATGCCCGGTGCTTTCAGCTTCGGCTGGTATTTGTACATTAATGT
GAACCAGGACAAGGACCTGGTGGCATCCTTCCACGTCATGCTGGCCAGCC
TCGAGTTCGTCCTGCGGCATGCCAAGGGCAAGGGAGAGGGCGAGAGTGCG
GGGGAAGGGAGGATAGATGGGGGGGCAAGGAGCACTCTGAAAAGTGAAGT
TCAAAAGTAAATGCCAACACATAGGATAGATCCCGTGGCCCAGGCCTGCT
TCGATGAGGTGACGGTGGCTCTGGGCGAGGGGGAAGGATCCGTCAAGACC
AAGGCTCGAGAGTATCTCGCCGATATCCTGGCCCTCCGCATCCCGCCCGA
TACGCACCGCCCCGGCCCCTGGCTGTGGGTGGCCTGCAGTGTTTTGATGG
CCCTGTTTGAAGGGGGCATGCCCGGGGGCAAGACGTTGGGGGACGTGCTC
AAGGCGACGGGCCTTAGGCCGTTAGAATTCGATGATTTTCTTGCGCATCT
AGCCCTCCTCTCTCAGCGGCTGGAGGGACTCTCAGATGACGTAAGGGAGC
TGGCGGGAAGCCTCAGGCAGAGTTGGAATGAGACGTCATGCGTCTACTCT
AAGTACGTCCAGCTGTGGAGCCACCGTCACAAGGTGTCACCCGTGGGCCT
TCCCTCCCTCGGGGATGACGACCGCATTATGCCCGGTGCTTTCAGCTTCG
GCTGGTATTTGTACATTAATGTGAACCAGGACAAGGACCTGGTGGCATCC
TTCCACGTCATGCTGGCCAGCCTCGAGTTCGTCCTGCGGCATGCCAAGGG
CAAGGGAGAGGGCGAGAGTGCGGGGGAAGGGAGGATAGATGGGGGGGCAA
GGAGCACTCTGAAAAGTGAAGTTCAAAAGTAA

Synonyms

Publications