jgi.p|Nanoce1779_2|611584, mRNA_10456 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611584
Unique NamemRNA_10456
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length720
Alignment locationscaffold_57:64587..65667 +

Link to JBrowse

Properties
Property NameValue
TranscriptId611670
TrackFilteredModels2
ProteinId611584
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:64587..65667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611584gene_10456Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611584mRNA_10456-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10456CDS_10456Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10456 ID=mRNA_10456|Name=jgi.p|Nanoce1779_2|611584|organism=Nannochloropsis oceanica|type=mRNA|length=720bp
ACAGTTCATTAATTCAAGGTATCACCACCATCTCGTTGAGAAGACCCCGC
ATCGCACTCAAGCAATGAAAATTTTCGTCACCGTCGCGCTCCTTTCCAGC
TCCCTCGCCTTGTGCCAGGCTGTCTTCGAGCCCTCTATGGAAGACGTCAA
TGAAAAGGTCTTCGGGAATGCACGTTCTCTTCTTGATGAAGACTTGCCTT
TACCGAAGGACTGGGTGGCCAGCACTAAGGAGAATGTTCCTTCCAAGACT
TTTGGCGGTATCGGTGATCATTTTGGCTCCTACCCGTACCACCCCTGGCA
CCCTTTCAAACCTAACCCTGACGGTAGCGGCCACGGGGCTAAGGATGATG
AAGGTCACACCGGTGGGAAGGATCTTAGTCATGGAGGTGTAGACAAAGCT
AACCCGGCTCCCAGCGGCGATCATCCGGACAAGATGGCCGCTGTCCCCGG
CGCGGTCGCCTACACGCCAAAGACACCCGTCGTCCGCTCCCTCGAGACGA
TCATGCTTAAGAAATCTCAGGAAGATAAGAACACCATCTTCAATCTCCGC
GGTCGTTAAACATCTTCTTGAGGGCCTTTTAAATATAACAAAAGAAAGTG
TGAATGGGTGGAGGGCTGGAGGGAAGGGAAGAATGCTGAGGGTAAGGCAA
GCAAGTCGTCCTTTTCACCTTTCATCAATTTTCTGTCATAAGCCACAATA
ATAATAATAATAATAATTAT
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protein sequence of jgi.p|Nanoce1779_2|611584

>mRNA_10456-protein ID=mRNA_10456-protein|Name=jgi.p|Nanoce1779_2|611584|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MKIFVTVALLSSSLALCQAVFEPSMEDVNEKVFGNARSLLDEDLPLPKDW
VASTKENVPSKTFGGIGDHFGSYPYHPWHPFKPNPDGSGHGAKDDEGHTG
GKDLSHGGVDKANPAPSGDHPDKMAAVPGAVAYTPKTPVVRSLETIMLKK
SQEDKNTIFNLRGR*
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mRNA from alignment at scaffold_57:64587..65667+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10456 ID=mRNA_10456|Name=jgi.p|Nanoce1779_2|611584|organism=Nannochloropsis oceanica|type=mRNA|length=1081bp|location=Sequence derived from alignment at scaffold_57:64587..65667+ (Nannochloropsis oceanica)
ACAGTTCATTAATTCAAGGTATCACCACCATCTCGTTGAGAAGACCCCGC
ATCGCACTCAAGCAATGAAAATTTTCGTCACCGTCGCGCTCCTTTCCAGC
TCCCTCGCCTTGTGCCAGGCTGTCTTCGAGCCCTCTATGGAAGGTACGTT
CTGCTTTCGGTAGGAACGGGAGCCCACCTGATTAGAGATAAATGCACCAC
GGACACTCCAGACTCCAATCGTGTGATTCACCTTGCTCTGTAGCATGTCA
CACAGTCCAATGCATGTACTGCCCCTCTAATTTTCTCCCCTCGGGCATCC
AGGAAAGATGAATATACATGCGCTAATACATCTTATGCTTTGGTTCCGCA
GTCGTCCTGCCTGTCTAATTGTATCGAAGCTTTGTTCCACACGATTTAGA
ACTTTACTCGCTTATCGACCAAAAAGGGACTCGATTGTCGAGATTGATCT
TCTCTGCTTTCATGTTGACCGTTTTCCTCACATTCACGTTTCACTATGAC
ATAGACGTCAATGAAAAGGTCTTCGGGAATGCACGTTCTCTTCTTGATGA
AGACTTGCCTTTACCGAAGGACTGGGTGGCCAGCACTAAGGAGAATGTTC
CTTCCAAGACTTTTGGCGGTATCGGTGATCATTTTGGCTCCTACCCGTAC
CACCCCTGGCACCCTTTCAAACCTAACCCTGACGGTAGCGGCCACGGGGC
TAAGGATGATGAAGGTCACACCGGTGGGAAGGATCTTAGTCATGGAGGTG
TAGACAAAGCTAACCCGGCTCCCAGCGGCGATCATCCGGACAAGATGGCC
GCTGTCCCCGGCGCGGTCGCCTACACGCCAAAGACACCCGTCGTCCGCTC
CCTCGAGACGATCATGCTTAAGAAATCTCAGGAAGATAAGAACACCATCT
TCAATCTCCGCGGTCGTTAAACATCTTCTTGAGGGCCTTTTAAATATAAC
AAAAGAAAGTGTGAATGGGTGGAGGGCTGGAGGGAAGGGAAGAATGCTGA
GGGTAAGGCAAGCAAGTCGTCCTTTTCACCTTTCATCAATTTTCTGTCAT
AAGCCACAATAATAATAATAATAATAATTAT
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Coding sequence (CDS) from alignment at scaffold_57:64587..65667+

>mRNA_10456 ID=mRNA_10456|Name=jgi.p|Nanoce1779_2|611584|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_57:64587..65667+ (Nannochloropsis oceanica)
ATGAAAATTTTCGTCACCGTCGCGCTCCTTTCCAGCTCCCTCGCCTTGTG
CCAGGCTGTCTTCGAGCCCTCTATGGAAGACGTCAATGAAAAGGTCTTCG
GGAATGCACGTTCTCTTCTTGATGAAGACTTGCCTTTACCGAAGGACTGG
GTGGCCAGCACTAAGGAGAATGTTCCTTCCAAGACTTTTGGCGGTATCGG
TGATCATTTTGGCTCCTACCCGTACCACCCCTGGCACCCTTTCAAACCTA
ACCCTGACGGTAGCGGCCACGGGGCTAAGGATGATGAAGGTCACACCGGT
GGGAAGGATCTTAGTCATGGAGGTGTAGACAAAGCTAACCCGGCTCCCAG
CGGCGATCATCCGGACAAGATGGCCGCTGTCCCCGGCGCGGTCGCCTACA
CGCCAAAGACACCCGTCGTCCGCTCCCTCGAGACGATCATGCTTAAGAAA
TCTCAGGAAGATAAGAACACCATCTTCAATCTCCGCGGTCGTTAAATGAA
AATTTTCGTCACCGTCGCGCTCCTTTCCAGCTCCCTCGCCTTGTGCCAGG
CTGTCTTCGAGCCCTCTATGGAAGACGTCAATGAAAAGGTCTTCGGGAAT
GCACGTTCTCTTCTTGATGAAGACTTGCCTTTACCGAAGGACTGGGTGGC
CAGCACTAAGGAGAATGTTCCTTCCAAGACTTTTGGCGGTATCGGTGATC
ATTTTGGCTCCTACCCGTACCACCCCTGGCACCCTTTCAAACCTAACCCT
GACGGTAGCGGCCACGGGGCTAAGGATGATGAAGGTCACACCGGTGGGAA
GGATCTTAGTCATGGAGGTGTAGACAAAGCTAACCCGGCTCCCAGCGGCG
ATCATCCGGACAAGATGGCCGCTGTCCCCGGCGCGGTCGCCTACACGCCA
AAGACACCCGTCGTCCGCTCCCTCGAGACGATCATGCTTAAGAAATCTCA
GGAAGATAAGAACACCATCTTCAATCTCCGCGGTCGTTAA
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Synonyms
Publications