jgi.p|Nanoce1779_2|627435, mRNA_1045 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|627435
Unique NamemRNA_1045
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1147
Alignment locationscaffold_2:1086493..1088088 -

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Properties
Property NameValue
TranscriptId627521
TrackFilteredModels2
ProteinId627435
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1086493..1088088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627435gene_1045Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627435mRNA_1045-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1045CDS_1045Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1045 ID=mRNA_1045|Name=jgi.p|Nanoce1779_2|627435|organism=Nannochloropsis oceanica|type=mRNA|length=1147bp
GCAGCAGCTCCAGCAGCGGCAGCAACAGCTCCAGCATCAACAGCGCCTAC
AACGACCAGAACAGCAGCAGCAGCAGCATCAACAGCAACAGCGATCCCAA
CCGCCACTCCAACGCACTGCCCCTCCCACCGCCCGTCCTCCTTCTCTCTC
CACCACCATTTCCAACTCCTCCTCACTCGCCTCCACATCCTCCGGCCCCT
CCTCCACCAGCAGTGCCAAGAAAGCAAGCTTCGCAGAATGCCTTTACAGA
ACCATGCTCAAAATGGACCAGGGAAAAAAGGGTGAGATTCAAGAGGCGTT
TCGTTATTTCAAATCTCACCCGAAATTACCCCATGTGGAGGTGCAGGACA
AGTTGATCCAGTTGCTCGGGAAAGACTTTGTCTCCCGGGCCTGGAAGGAG
GCGCGGCGGTTGCTCGAGGAAGGAGGTGGTGGAGGAGGAGGAGGAGGAGG
AGGAGAAGGAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGCGCGCTCT
CCTCGCCAGAACAGGGGAGAAGGGAGCAGGGAGGGATATCGCGGCAGCAG
CACCAGCAGCACCAGCAGCAGATGGCTGCACGACATCAGCAATATCCGCA
ACATGTGGTGGTGGAGATGCTGGACGACCTGGATTTGGTGAACGCACAGC
AGGCGACGGGGAACGACATCGAGACGGACATCACACGGGAGGCAGATCTG
GAGTCGATCGTCCGAGAAGAAGACGAGGGGCTGCTGGAGCACCTACAACC
GATGCGGATGCTCTCGGCGGTGGAAGCGGAGAAATGGGAAAATAAGCATG
TGATGGATGGGGAGCTCTGTCGAAAGGCTTTGGCGAGGGCAGAGAGGAAA
GAGGGGGACAGGTTGGCCGCGCTAGCGATGGGAGGGATGGGCGCAGGTAA
GAAGAGCGTGGGGAAGGAGGAGGGGGGAGAGAACGAGGTGGAGGACGAGG
TGGAGGAGGACGAGGAGGCGGAGGGTCCAGGGAGGAAGTGGGCAGTGGAA
GCGTTGTCGAGGGCTTGCCAGGACTATGCGACTGGCTTGTTGGAGGACTT
GAAGGAGGTGAAGGAAAAGAAGAATATCGAGCGCGTGAGCCTGTCTTTTC
TGTCTGCTAAACCAACTGCGGGCGCTCGGCCTCTTTTCGGCTTGTGA
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protein sequence of jgi.p|Nanoce1779_2|627435

>mRNA_1045-protein ID=mRNA_1045-protein|Name=jgi.p|Nanoce1779_2|627435|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MLKMDQGKKGEIQEAFRYFKSHPKLPHVEVQDKLIQLLGKDFVSRAWKEA
RRLLEEGGGGGGGGGGGEGGRGGGGRGGGGALSSPEQGRREQGGISRQQH
QQHQQQMAARHQQYPQHVVVEMLDDLDLVNAQQATGNDIETDITREADLE
SIVREEDEGLLEHLQPMRMLSAVEAEKWENKHVMDGELCRKALARAERKE
GDRLAALAMGGMGAGKKSVGKEEGGENEVEDEVEEDEEAEGPGRKWAVEA
LSRACQDYATGLLEDLKEVKEKKNIERVSLSFLSAKPTAGARPLFGL*
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mRNA from alignment at scaffold_2:1086493..1088088-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1045 ID=mRNA_1045|Name=jgi.p|Nanoce1779_2|627435|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp|location=Sequence derived from alignment at scaffold_2:1086493..1088088- (Nannochloropsis oceanica)
GCAGCAGCTCCAGCAGCGGCAGCAACAGCTCCAGCATCAACAGCGCCTAC
AACGACCAGAACAGCAGCAGCAGCAGCATCAACAGCAACAGCGATCCCAA
CCGCCACTCCAACGCACTGCCCCTCCCACCGCCCGTCCTCCTTCTCTCTC
CACCACCATTTCCAACTCCTCCTCACTCGCCTCCACATCCTCCGGCCCCT
CCTCCACCAGCAGTGCCAAGAAAGCAAGCTTCGCAGAATGCCTTTACAGA
ACCATGCTCAAAATGGACCAGGGAAAAAAGGGTGAGATTCAAGAGGCGTT
TCGTTATTTCAAATCTCACCCGAAATTACCCCATGTGGAGGTGCAGGACA
AGTTGATCCAGTTGCTCGGGAAAGACTTTGTCTCCCGGGCCTGGAAGGAG
GCGCGGCGGTTGCTCGAGGAAGGAGGTGGTGGAGGAGGAGGAGGAGGAGG
AGGAGAAGGAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGCGCGCTCT
CCTCGCCAGAACAGGGGAGAAGGGAGCAGGGAGGGATATCGCGGCAGCAG
CACCAGCAGCACCAGCAGCAGATGGCTGCACGACATCAGCAATATCCGCA
ACATGTGGTGGTGGAGATGCTGGACGACCTGGATTTGGTGAACGCACAGC
AGGCGACGGGGAACGACATCGAGACGGACATCACACGGGAGGCAGATCTG
GAGTCGATCGTCCGAGAAGAAGACGAGGGGCTGCTGGAGCACCTACAACC
GATGCGGATGCTCTCGGCGGTGGAAGCGGAGAAATGGGAAAATAAGCATG
TGATGGATGGGGAGCTCTGTCGAAAGGCTTTGGCGAGGGCAGAGAGGAAA
GAGGGGGACAGGTTGGCCGCGCTAGCGATGGGAGGGATGGGCGCAGGTAA
GAAGAGCGTGGGGAAGGAGGAGGGGGGAGAGAACGAGGTGGAGGACGAGG
TGGAGGAGGACGAGGAGGCGGAGGGTCCAGGGAGGAAGTGGGCAGTGGAA
GCGTTGTCGAGGGCTTGCCAGGACTATGCGACTGGCTTGTTGGAGGACTT
GGTGAGAATTGCGCGGGGGAGAGGGAACGACGACGTGAGGCATTTGATTC
GAGAGGGGGCGACATTGGGGGCAGGAGAGCCCATGGTGGTTAAATTTTTA
CAGCCTTACAAGATGCCGTGGGCGGGGGGGGCATTAGCGGAGGATGAACA
ACAGCAGCAGCAACAGATGCAGCAGCAGCAGCAGTTGCAGCAGCAGGGCC
AGACGAGGGGGTTGAGAGCGGAGAAACCCCACGTTTTGACAAGGGCGGAT
GTGGTGCGGTACTTGGCGAGAAAGCAGAGAAAAGGGAGGGGGAGAGGGGG
GCAGGGGCACGATCGGTTGATAGATTTGCTGGCGACAACGAGTGTGAAGA
GGGTGGATTTGGTGCTGGGGAGAGGAGAAAGAGGAGGGGGAGGAGGAAGG
GGAGGAAGAGGAGGGGATGGGAGAGGCTAAGCGACTGTATTTCTAAAGAG
AAGGAGGTGAAGGAAAAGAAGAATATCGAGCGCGTGAGCCTGTCTTTTCT
GTCTGCTAAACCAACTGCGGGCGCTCGGCCTCTTTTCGGCTTGTGA
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Coding sequence (CDS) from alignment at scaffold_2:1086493..1088088-

>mRNA_1045 ID=mRNA_1045|Name=jgi.p|Nanoce1779_2|627435|organism=Nannochloropsis oceanica|type=CDS|length=1788bp|location=Sequence derived from alignment at scaffold_2:1086493..1088088- (Nannochloropsis oceanica)
AAGGAGGTGAAGGAAAAGAAGAATATCGAGCGCGTGAGCCTGTCTTTTCT
GTCTGCTAAACCAACTGCGGGCGCTCGGCCTCTTTTCGGCTTGTGAATGC
TCAAAATGGACCAGGGAAAAAAGGGTGAGATTCAAGAGGCGTTTCGTTAT
TTCAAATCTCACCCGAAATTACCCCATGTGGAGGTGCAGGACAAGTTGAT
CCAGTTGCTCGGGAAAGACTTTGTCTCCCGGGCCTGGAAGGAGGCGCGGC
GGTTGCTCGAGGAAGGAGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGAA
GGAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGCGCGCTCTCCTCGCC
AGAACAGGGGAGAAGGGAGCAGGGAGGGATATCGCGGCAGCAGCACCAGC
AGCACCAGCAGCAGATGGCTGCACGACATCAGCAATATCCGCAACATGTG
GTGGTGGAGATGCTGGACGACCTGGATTTGGTGAACGCACAGCAGGCGAC
GGGGAACGACATCGAGACGGACATCACACGGGAGGCAGATCTGGAGTCGA
TCGTCCGAGAAGAAGACGAGGGGCTGCTGGAGCACCTACAACCGATGCGG
ATGCTCTCGGCGGTGGAAGCGGAGAAATGGGAAAATAAGCATGTGATGGA
TGGGGAGCTCTGTCGAAAGGCTTTGGCGAGGGCAGAGAGGAAAGAGGGGG
ACAGGTTGGCCGCGCTAGCGATGGGAGGGATGGGCGCAGGTAAGAAGAGC
GTGGGGAAGGAGGAGGGGGGAGAGAACGAGGTGGAGGACGAGGTGGAGGA
GGACGAGGAGGCGGAGGGTCCAGGGAGGAAGTGGGCAGTGGAAGCGTTGT
CGAGGGCTTGCCAGGACTATGCGACTGGCTTGTTGGAGGACTTGAAGGAG
GTGAAGGAAAAGAAGAATATCGAGCGCGTGAGCCTGTCTTTTCTGTCTGC
TAAACCAACTGCGGGCGCTCGGCCTCTTTTCGGCTTGTGAATGCTCAAAA
TGGACCAGGGAAAAAAGGGTGAGATTCAAGAGGCGTTTCGTTATTTCAAA
TCTCACCCGAAATTACCCCATGTGGAGGTGCAGGACAAGTTGATCCAGTT
GCTCGGGAAAGACTTTGTCTCCCGGGCCTGGAAGGAGGCGCGGCGGTTGC
TCGAGGAAGGAGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGA
AGAGGAGGAGGAGGAAGAGGAGGAGGAGGCGCGCTCTCCTCGCCAGAACA
GGGGAGAAGGGAGCAGGGAGGGATATCGCGGCAGCAGCACCAGCAGCACC
AGCAGCAGATGGCTGCACGACATCAGCAATATCCGCAACATGTGGTGGTG
GAGATGCTGGACGACCTGGATTTGGTGAACGCACAGCAGGCGACGGGGAA
CGACATCGAGACGGACATCACACGGGAGGCAGATCTGGAGTCGATCGTCC
GAGAAGAAGACGAGGGGCTGCTGGAGCACCTACAACCGATGCGGATGCTC
TCGGCGGTGGAAGCGGAGAAATGGGAAAATAAGCATGTGATGGATGGGGA
GCTCTGTCGAAAGGCTTTGGCGAGGGCAGAGAGGAAAGAGGGGGACAGGT
TGGCCGCGCTAGCGATGGGAGGGATGGGCGCAGGTAAGAAGAGCGTGGGG
AAGGAGGAGGGGGGAGAGAACGAGGTGGAGGACGAGGTGGAGGAGGACGA
GGAGGCGGAGGGTCCAGGGAGGAAGTGGGCAGTGGAAGCGTTGTCGAGGG
CTTGCCAGGACTATGCGACTGGCTTGTTGGAGGACTTG
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Synonyms
Publications