jgi.p|Nanoce1779_2|611551, mRNA_10449 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611551
Unique NamemRNA_10449
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length686
Alignment locationscaffold_57:38712..39397 -

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Properties
Property NameValue
TranscriptId611637
TrackFilteredModels2
ProteinId611551
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:38712..39397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611551gene_10449Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611551mRNA_10449-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10449CDS_10449Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10449 ID=mRNA_10449|Name=jgi.p|Nanoce1779_2|611551|organism=Nannochloropsis oceanica|type=mRNA|length=686bp
CTCCATGGTTGGGCTGAGTTGTTGACAGAGGGGGAGGAGGAGAGTGAGGG
AGGCTGAGGAGGCAAGTCGGACGGGGAGGTTGGACAGGGACATTGCCTTA
CACAGGCGCTAGTGTGTGCGCGTTTACATAATAATCAACCAACCAATCAA
CCATAGAAAAGTGTGTGTAAGCTTGTGTCATCGAGGCTGAGTGCATGCAA
GGCGGTAGTGTGGTGGTCTGTAATGCGACCAGCTCTTGTCGCAGGCCCAT
CTCCTTAAAAGTAAAAATGGCTAGAAGAAGAGCCAACTTTGGAGGGATGA
ACGCAATAGTGTCTAATTGGGACAAATTGGTGTAAATATAAATGCCACAA
CTTTTCCCTCTTGTAGTTTTGATTCTTCTCTCTGCGACCTTTACACACAA
AGCATCCCTCCATCCGTTCCCTCTGTACCTCTCCAGCCCGGAGAATGGAC
TTATTAAGCTCCTGGATAAGATGGATCGTAGCTGGGGGATGGATCAGTTC
CATTCCGAAACCAATACTATTCTTTCGTGTCTACGCCCAAGTTTTTTATT
CATAGCGCTGATACAGCAGCCCTTGCCTGCGATACGCTCCGGAAAGTTGA
TCGTCCAACACCTAGTTGCGCCTCAGGCCTCACATGACGGTTGGTGGAAT
GAAGGCAGAGGTAGGCAGCGAAATTGAAATATTCTG
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protein sequence of jgi.p|Nanoce1779_2|611551

>mRNA_10449-protein ID=mRNA_10449-protein|Name=jgi.p|Nanoce1779_2|611551|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MPQLFPLVVLILLSATFTHKASLHPFPLYLSSPENGLIKLLDKMDRSWGM
DQFHSETNTILSCLRPSFLFIALIQQPLPAIRSGKLIVQHLVAPQASHDG
WWNEGRGRQRN*
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mRNA from alignment at scaffold_57:38712..39397-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10449 ID=mRNA_10449|Name=jgi.p|Nanoce1779_2|611551|organism=Nannochloropsis oceanica|type=mRNA|length=686bp|location=Sequence derived from alignment at scaffold_57:38712..39397- (Nannochloropsis oceanica)
CTCCATGGTTGGGCTGAGTTGTTGACAGAGGGGGAGGAGGAGAGTGAGGG
AGGCTGAGGAGGCAAGTCGGACGGGGAGGTTGGACAGGGACATTGCCTTA
CACAGGCGCTAGTGTGTGCGCGTTTACATAATAATCAACCAACCAATCAA
CCATAGAAAAGTGTGTGTAAGCTTGTGTCATCGAGGCTGAGTGCATGCAA
GGCGGTAGTGTGGTGGTCTGTAATGCGACCAGCTCTTGTCGCAGGCCCAT
CTCCTTAAAAGTAAAAATGGCTAGAAGAAGAGCCAACTTTGGAGGGATGA
ACGCAATAGTGTCTAATTGGGACAAATTGGTGTAAATATAAATGCCACAA
CTTTTCCCTCTTGTAGTTTTGATTCTTCTCTCTGCGACCTTTACACACAA
AGCATCCCTCCATCCGTTCCCTCTGTACCTCTCCAGCCCGGAGAATGGAC
TTATTAAGCTCCTGGATAAGATGGATCGTAGCTGGGGGATGGATCAGTTC
CATTCCGAAACCAATACTATTCTTTCGTGTCTACGCCCAAGTTTTTTATT
CATAGCGCTGATACAGCAGCCCTTGCCTGCGATACGCTCCGGAAAGTTGA
TCGTCCAACACCTAGTTGCGCCTCAGGCCTCACATGACGGTTGGTGGAAT
GAAGGCAGAGGTAGGCAGCGAAATTGAAATATTCTG
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Coding sequence (CDS) from alignment at scaffold_57:38712..39397-

>mRNA_10449 ID=mRNA_10449|Name=jgi.p|Nanoce1779_2|611551|organism=Nannochloropsis oceanica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_57:38712..39397- (Nannochloropsis oceanica)
ATGCCACAACTTTTCCCTCTTGTAGTTTTGATTCTTCTCTCTGCGACCTT
TACACACAAAGCATCCCTCCATCCGTTCCCTCTGTACCTCTCCAGCCCGG
AGAATGGACTTATTAAGCTCCTGGATAAGATGGATCGTAGCTGGGGGATG
GATCAGTTCCATTCCGAAACCAATACTATTCTTTCGTGTCTACGCCCAAG
TTTTTTATTCATAGCGCTGATACAGCAGCCCTTGCCTGCGATACGCTCCG
GAAAGTTGATCGTCCAACACCTAGTTGCGCCTCAGGCCTCACATGACGGT
TGGTGGAATGAAGGCAGAGGTAGGCAGCGAAATTGA
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Synonyms
Publications