jgi.p|Nanoce1779_2|611541, mRNA_10446 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611541
Unique NamemRNA_10446
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1052
Alignment locationscaffold_57:30405..32036 +

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Properties
Property NameValue
TranscriptId611627
TrackFilteredModels2
ProteinId611541
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:30405..32036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611541gene_10446Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611541mRNA_10446-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10446CDS_10446Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10446 ID=mRNA_10446|Name=jgi.p|Nanoce1779_2|611541|organism=Nannochloropsis oceanica|type=mRNA|length=1052bp
GATATATCCCCTTTCTTCGCCAAAACGCGTTTTTTTCCACTCCCTCCACT
CACAGGAGGGAGGGAGGGAGGGAGGGGGGGGGATGAGGGTAGATCTGCAC
ACGTACGCGCCAGAAAGCTTTGCGGCTTTGTCGCTGCTGGGACCCAAGGC
CTACACTGCCCACGCTTTCCCCCTCTTCCTCCTCCCCCTCTCCCTGCACA
AGTCCATCATTAATAACGTCGCTTCCCTCCGACGGTTTCTTCCGTTACTG
GACGTTGCGCCCTTGCATAACGGCCCAGGTGAAAGGTACGAAAGGGAAAG
GGGGGAGGGAGGAGGGATGGAGGGAGAAAGAAGCACAATCATCCATACAC
TGCTCTTTAACCGTCTCTGCTTATGCCTCCCTTCCTCTCCTTTCTCTCCC
ACTCGCTCGCTCCCTCCCTCCTTCCCTCCCTCCCTCCTCAGAGACATTCT
CCTCCTGGGCCTGTACAACGGCTCCGCGGAGGCCGAGGCCGAGGCCGAGG
ACGGGGGAGAAAAGGAGGAAGGGAAGGAGGGAAAATTGCGCGAAAGCCTT
TTCTTGCTGGAGAGAGAGCTCAAGCGGCACTGGCCCACACGATTACTGGA
TCGACTCATCCTGTCCCCTCACCTCATCCTCCCCTTCCGCATGCCTTGCC
AAGAGGAGGGAGGGAGGGAGGGGAGGCATTGAAGGGGAGGTTGAGAGGGG
CGATAGGGAAGCTCGGGGGGGAGGAGGAGGAAACATCCACTGCTCTTTGT
TCAGATGGACAGAGCCGTGCTGCTCAGGGGGGGGGGGGAAGGGGGAGGGG
ATGGTGATGGAGGAGCGGGCTGTGTACACAGAATCCGATCTGACAGCGAT
GGCCAACCGTCTCTACGTTGCTCGTACCGACCGCACCCGAGGAGAAAGAA
GGGAGAGAGAAAGAGTACGGAGGAGGGCCAGCACAGGACATTTACTATCA
CCAGGAGGAGGCGACGGTGGTGCTCTCCCTCCCTCCCTCCCTCCTCCTCC
TCCTCACCTTCACTTCACGGTGGTGAGGGACGCGCTGCGTTTTTTGTGTC
GA
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protein sequence of jgi.p|Nanoce1779_2|611541

>mRNA_10446-protein ID=mRNA_10446-protein|Name=jgi.p|Nanoce1779_2|611541|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MRVDLHTYAPESFAALSLLGPKAYTAHAFPLFLLPLSLHKSIINNVASLR
RFLPLLDVAPLHNGPGERYERERGEGGGMEGERSTIIHTLLFNRLCLCLP
SSPFSPTRSLPPSFPPSLLRDILLLGLYNGSAEAEAEAEDGGEKEEGKEG
KLRESLFLLERELKRHWPTRLLDRLILSPHLILPFRMPCQEEGGREGRH*
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mRNA from alignment at scaffold_57:30405..32036+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10446 ID=mRNA_10446|Name=jgi.p|Nanoce1779_2|611541|organism=Nannochloropsis oceanica|type=mRNA|length=1632bp|location=Sequence derived from alignment at scaffold_57:30405..32036+ (Nannochloropsis oceanica)
GATATATCCCCTTTCTTCGCCAAAACGCGTTTTTTTCCACTCCCTCCACT
CACAGGAGGGAGGGAGGGAGGGAGGGGGGGGGATGAGGGTAGATCTGCAC
ACGTACGCGCCAGAAAGCTTTGCGGCTTTGTCGCTGCTGGGACCCAAGGT
ATGGAGGGGGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGAAGGGAGACAGAGAGAGAGAGAGGGAGGGAGGAATGGAGAG
ATGGAAAATTAGATTAAGGAGAATTCTTGACTTAATTCACCTTGCCCATC
CCATCATTCATGTACGCGGGTCCTCCACTCCATCCCTCTCTCCTTCCCTT
CCTCCTTTCCTTCTTTCCCTTCCTCTGCCCTCCCATTTCCCTATGTCGAA
TCCATCCATGTCCTTCCCTTCCTCTTTCTCTTGTTCTAATCCTCTCTTCC
TTCCTTCCTCCCTCCTTCCCTTCCTCCCCACAGGCCTACACTGCCCACGC
TTTCCCCCTCTTCCTCCTCCCCCTCTCCCTGCACAAGTCCATCATTAATA
ACGTCGCTTCCCTCCGACGGTTTCTTCCGTTACTGGACGTTGCGCCCTTG
CATAACGGCCCAGGTGAAAGGTACGAAAGGGAAAGGGGGGAGGGAGGAGG
GATGGAGGGAGAAAGAAGCACAATCATCCATACACTGCTCTTTAACCGTC
TCTGCTTATGCCTCCCTTCCTCTCCTTTCTCTCCCACTCGCTCGCTCCCT
CCCTCCTTCCCTCCCTCCCTCCTCAGAGACATTCTCCTCCTGGGCCTGTA
CAACGGCTCCGCGGAGGCCGAGGCCGAGGCCGAGGACGGGGGAGAAAAGG
AGGAAGGGAAGGAGGGAAAATTGCGCGAAAGCCTTTTCTTGCTGGAGAGA
GAGCTCAAGCGGCACTGGCCCACACGATTACTGGATCGACTCATCCTGTC
CCCTCACCTCATCCTCCCCTTCCGCATGCCTTGCCAAGAGCCGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGGAGAAGGGAGAGGGAGGAAAGGGAGTG
TGTAGGCAGGAGAGAGAGGGGGAGGGAGGGAGGGAGGGAGGGGAGGCATT
GAAGGGGAGGTTGAGAGGGGCGATAGGGAAGCTCGGGGGGGAGGAGGAGG
AAACATCCACTGCTCTTTGTTCAGATGGACAGAGCCGTGCTGCTCAGGGG
GGGGGGGGAAGGGGGAGGGGATGGTGATGGAGGAGCGGGCTGTGTACACA
GGTAGGGGCACAAGAAGGGGGAAAGGCAGTGAGAAAGGGAGGGAGGGAGA
GAAGGAGAGGGGGGGGGGGAGGGAGTGAGGGGGGGAATAGCAGCTATGAG
GCCCACATTTTCCCTGATAAAGGCATCTATCCCTCCCTCTCTCCCTTCCT
CCCTCCCTCAGAATCCGATCTGACAGCGATGGCCAACCGTCTCTACGTTG
CTCGTACCGACCGCACCCGAGGAGAAAGAAGGGAGAGAGAAAGAGTACGG
AGGAGGGCCAGCACAGGACATTTACTATCACCAGGAGGAGGCGACGGTGG
TGCTCTCCCTCCCTCCCTCCCTCCTCCTCCTCCTCACCTTCACTTCACGG
TGGTGAGGGACGCGCTGCGTTTTTTGTGTCGA
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Coding sequence (CDS) from alignment at scaffold_57:30405..32036+

>mRNA_10446 ID=mRNA_10446|Name=jgi.p|Nanoce1779_2|611541|organism=Nannochloropsis oceanica|type=CDS|length=1800bp|location=Sequence derived from alignment at scaffold_57:30405..32036+ (Nannochloropsis oceanica)
ATGAGGGTAGATCTGCACACGTACGCGCCAGAAAGCTTTGCGGCTTTGTC
GCTGCTGGGACCCAAGGCCTACACTGCCCACGCTTTCCCCCTCTTCCTCC
TCCCCCTCTCCCTGCACAAGTCCATCATTAATAACGTCGCTTCCCTCCGA
CGGTTTCTTCCGTTACTGGACGTTGCGCCCTTGCATAACGGCCCAGGTGA
AAGGTACGAAAGGGAAAGGGGGGAGGGAGGAGGGATGGAGGGAGAAAGAA
GCACAATCATCCATACACTGCTCTTTAACCGTCTCTGCTTATGCCTCCCT
TCCTCTCCTTTCTCTCCCACTCGCTCGCTCCCTCCCTCCTTCCCTCCCTC
CCTCCTCAGAGACATTCTCCTCCTGGGCCTGTACAACGGCTCCGCGGAGG
CCGAGGCCGAGGCCGAGGACGGGGGAGAAAAGGAGGAAGGGAAGGAGGGA
AAATTGCGCGAAAGCCTTTTCTTGCTGGAGAGAGAGCTCAAGCGGCACTG
GCCCACACGATTACTGGATCGACTCATCCTGTCCCCTCACCTCATCCTCC
CCTTCCGCATGCCTTGCCAAGAGGAGGGAGGGAGGGAGGGGAGGCATTGA
ATGAGGGTAGATCTGCACACGTACGCGCCAGAAAGCTTTGCGGCTTTGTC
GCTGCTGGGACCCAAGGCCTACACTGCCCACGCTTTCCCCCTCTTCCTCC
TCCCCCTCTCCCTGCACAAGTCCATCATTAATAACGTCGCTTCCCTCCGA
CGGTTTCTTCCGTTACTGGACGTTGCGCCCTTGCATAACGGCCCAGGTGA
AAGGTACGAAAGGGAAAGGGGGGAGGGAGGAGGGATGGAGGGAGAAAGAA
GCACAATCATCCATACACTGCTCTTTAACCGTCTCTGCTTATGCCTCCCT
TCCTCTCCTTTCTCTCCCACTCGCTCGCTCCCTCCCTCCTTCCCTCCCTC
CCTCCTCAGAGACATTCTCCTCCTGGGCCTGTACAACGGCTCCGCGGAGG
CCGAGGCCGAGGCCGAGGACGGGGGAGAAAAGGAGGAAGGGAAGGAGGGA
AAATTGCGCGAAAGCCTTTTCTTGCTGGAGAGAGAGCTCAAGCGGCACTG
GCCCACACGATTACTGGATCGACTCATCCTGTCCCCTCACCTCATCCTCC
CCTTCCGCATGCCTTGCCAAGAGGAGGGAGGGAGGGAGGGGAGGCATTGA
ATGAGGGTAGATCTGCACACGTACGCGCCAGAAAGCTTTGCGGCTTTGTC
GCTGCTGGGACCCAAGGCCTACACTGCCCACGCTTTCCCCCTCTTCCTCC
TCCCCCTCTCCCTGCACAAGTCCATCATTAATAACGTCGCTTCCCTCCGA
CGGTTTCTTCCGTTACTGGACGTTGCGCCCTTGCATAACGGCCCAGGTGA
AAGGTACGAAAGGGAAAGGGGGGAGGGAGGAGGGATGGAGGGAGAAAGAA
GCACAATCATCCATACACTGCTCTTTAACCGTCTCTGCTTATGCCTCCCT
TCCTCTCCTTTCTCTCCCACTCGCTCGCTCCCTCCCTCCTTCCCTCCCTC
CCTCCTCAGAGACATTCTCCTCCTGGGCCTGTACAACGGCTCCGCGGAGG
CCGAGGCCGAGGCCGAGGACGGGGGAGAAAAGGAGGAAGGGAAGGAGGGA
AAATTGCGCGAAAGCCTTTTCTTGCTGGAGAGAGAGCTCAAGCGGCACTG
GCCCACACGATTACTGGATCGACTCATCCTGTCCCCTCACCTCATCCTCC
CCTTCCGCATGCCTTGCCAAGAGGAGGGAGGGAGGGAGGGGAGGCATTGA
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Synonyms
Publications