jgi.p|Nanoce1779_2|611534, mRNA_10445 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611534
Unique NamemRNA_10445
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length739
Alignment locationscaffold_57:26035..27090 -

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Properties
Property NameValue
TranscriptId611620
TrackFilteredModels2
ProteinId611534
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:26035..27090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611534gene_10445Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611534mRNA_10445-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10445CDS_10445Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10445 ID=mRNA_10445|Name=jgi.p|Nanoce1779_2|611534|organism=Nannochloropsis oceanica|type=mRNA|length=739bp
CAGCATCACAAAATGGGCAACCAACCCCCCACCAAGGCGACACTATCGGG
GCTAGTGACACGAATCTGGCGCTACCCACATCGGATTGATGGCAAGGACA
AGGAAACTTTGATTATACTTCGGCACTATCGGCGTAAGGGCGAGAAGATC
CTCTATGTAAATGGTAAGTGCCGTGGTTGGCTTTACATGTGTGCTTCGCG
TCCCGGGGTTCCCTTTCTTCATCTTCTCTTTTGACCCCAGCTTCTTATTC
TTCCCCACGTCCTCTCTTTGTGTTCTTCTTCTACCTTCTATTCTTTGTTC
TCTTTATCCTTCTCCACACCTTGATTCAGCCGAAGGGCAGCTTCGTGTTT
GTTTTCTGTTTGCTCTCTTCGTCCACATTCGTCTCCTTGGTTCTGATACC
GTCCCCTCTCCACACTCGTCACCCTCCCTCCTTACCTCCTCATTATTGTA
GGTGAGACGGTGCACCATTCCGTGGATCGCATTGACAGCGGCGGCGTCTT
GCCTTTCGAGCTCCTCGATGGACGCGTGCCGTGCGAACTGGCCATTGTTG
ACTACCCCGGCCTCTCTTCTTACACACTCACCATTCGGGGCTCCACATGG
CCCTGTGACAACGATGGCATCGAAGCCGAGAAGAATGGGGGAGGAAGAGA
GGGAAGAGGGGAAGGGACAGAGGAGGAGGTTTGGGTAGAGGAAGTGTCGG
TAAGTGCTGTGTCGTTGCTGCCAGTGGGGGGAGGAGGAG
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protein sequence of jgi.p|Nanoce1779_2|611534

>mRNA_10445-protein ID=mRNA_10445-protein|Name=jgi.p|Nanoce1779_2|611534|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MVSAVVGFTCVLRVPGFPFFIFSFDPSFLFFPTSSLCVLLLPSILCSLYP
SPHLDSAEGQLRVCFLFALFVHIRLLGSDTVPSPHSSPSLLTSSLL*
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mRNA from alignment at scaffold_57:26035..27090-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10445 ID=mRNA_10445|Name=jgi.p|Nanoce1779_2|611534|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp|location=Sequence derived from alignment at scaffold_57:26035..27090- (Nannochloropsis oceanica)
CAGCATCACAAAATGGGCAACCAACCCCCCACCAAGGCGACACTATCGGG
GCTAGTGACACGAATCTGGCGCTACCCACATCGGATTGATGGCAAGGACA
AGGAAACTTTGATTATACTTCGGTAAGATACAGGTAGAATGGCAGGGTAA
GGTGAGGACGGAGGGCAAATGCTACCTAGGGAGCGAGGAAGGAAGCCCGG
CACCTAACTCACAACCAGACACACAACATTCCACACCAATCCCTTGCCTC
AAAGGCACTATCGGCGTAAGGGCGAGAAGATCCTCTATGTAAATGGTAAG
TGCCGTGGTTGGCTTTACATGTGTGCTTCGCGTCCCGGGGTTCCCTTTCT
TCATCTTCTCTTTTGACCCCAGCTTCTTATTCTTCCCCACGTCCTCTCTT
TGTGTTCTTCTTCTACCTTCTATTCTTTGTTCTCTTTATCCTTCTCCACA
CCTTGATTCAGCCGAAGGGCAGCTTCGTGTTTGTTTTCTGTTTGCTCTCT
TCGTCCACATTCGTCTCCTTGGTTCTGATACCGTCCCCTCTCCACACTCG
TCACCCTCCCTCCTTACCTCCTCATTATTGTAGGTGAGACGGTGCACCAT
TCCGTGGATCGCATTGACAGCGGCGGCGTCTTGCCTTTCGAGCTCCTCGA
TGGACGCGTGCCGTGCGAACTGGCCATTGTTGACTACCCCGGTGCGTGCA
GAGAGGGAGGGAGGGAGAGAGGGAGGGAAGGAGGGAAGGTTGCAAGGGGG
GGCGGGAACATGATTGTAACAGCCCTTTGTGCTTGCGCCACCCATTCGTC
TGATATTCCATTGCACCTCCTTCCCTGTCACGTGACGTGCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTGGCAGGCCTCTCTTCTTACACACTCACCA
TTCGGGGCTCCACATGGCCCTGTGACAACGATGGCATCGAAGCCGAGAAG
AATGGGGGAGGAAGAGAGGGAAGAGGGGAAGGGACAGAGGAGGAGGTTTG
GGTAGAGGAAGTGTCGGTAAGTGCTGTGTCGTTGCTGCCAGTGGGGGGAG
GAGGAG
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Coding sequence (CDS) from alignment at scaffold_57:26035..27090-

>mRNA_10445 ID=mRNA_10445|Name=jgi.p|Nanoce1779_2|611534|organism=Nannochloropsis oceanica|type=CDS|length=291bp|location=Sequence derived from alignment at scaffold_57:26035..27090- (Nannochloropsis oceanica)
ATGGTAAGTGCCGTGGTTGGCTTTACATGTGTGCTTCGCGTCCCGGGGTT
CCCTTTCTTCATCTTCTCTTTTGACCCCAGCTTCTTATTCTTCCCCACGT
CCTCTCTTTGTGTTCTTCTTCTACCTTCTATTCTTTGTTCTCTTTATCCT
TCTCCACACCTTGATTCAGCCGAAGGGCAGCTTCGTGTTTGTTTTCTGTT
TGCTCTCTTCGTCCACATTCGTCTCCTTGGTTCTGATACCGTCCCCTCTC
CACACTCGTCACCCTCCCTCCTTACCTCCTCATTATTGTAG
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Synonyms
Publications