jgi.p|Nanoce1779_2|353482, mRNA_10444 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|353482
Unique NamemRNA_10444
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length897
Alignment locationscaffold_57:22746..24913 -

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Properties
Property NameValue
TranscriptId353568
TrackFilteredModels2
ProteinId353482
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:22746..24913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|353482gene_10444Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|353482mRNA_10444-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10444CDS_10444Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10444 ID=mRNA_10444|Name=jgi.p|Nanoce1779_2|353482|organism=Nannochloropsis oceanica|type=mRNA|length=897bp
ACAGGTGCGAGCGGGGATGGGGTGCACCGGGGAAGAAAAAAAGAAGAATG
ATGGCGTCAAGAAGTTGAAGGAAGCAGGAACCTTTGCCGGTCAACCCTTT
CGAGCAAATGTCATCACCATCCGCCCTCCTCCTCCTGCTGCTGCTTCTCA
TGGCCTCGACTAGCGCCTTCCTTGTCCCGTCCCCCATCGTAATGCCCCAG
CGACGCATGTCTTCCGTGCGCGCTGCAGGATTGGAGATAGGCGAGATCCT
TCCGACGCTCGAACCTACTCTCAAAGTCACACGCGTCTCGGTGGAAGATC
CTGCGGCCGACCCCCCCATCTGCGCGTATCTGGTGGAAGCTGATGTCCAT
GGACCGGATGTTAAAAGAACCTACAACCAAGCGCTGAAAGCCGGCACGAT
GAACGCCAACTTTCCCGGTTTTAGGAAGGGAGTGATGCCCGGCCATGCTT
TGGCCTCCATTATGGACGTCTGCCGCACAGCCATGGAAATGCACGGCCTT
GAGAACCTTCCTGTGAATGAACGCAAGCTCCGGATGAAGGTGCCCAAGAC
CACCGAAGAGCTGGCCAAGACATACGAGATGGGCACCGACCTTTCATTCG
CCTGCGAAATTGACGCGATTGGTGTGCCAGGAGAGCCAAAATCCGCCCCA
GTACCATTATCTGAAGTGTAGAAGTAGGAGAAGGAGGGGAAAAAGATGCA
GGGAGGTAGGTAGGGAGGTAGGGAGGTATGACTTGTGTAAAAAGGAGAGG
AAAAAGGGTCGTAGGAAAGGAGGAAGAAAGATTTCTGAAAAAGAAGCTAT
TGACAATCAAAGACAAAAAAAATTGCCTGAGCAAGCTGATTTATGAGATT
TGAAGTCAGACTTTATGCTTTATGGGTTTGTACTGTCGAATCGTGCC
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protein sequence of jgi.p|Nanoce1779_2|353482

>mRNA_10444-protein ID=mRNA_10444-protein|Name=jgi.p|Nanoce1779_2|353482|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MSSPSALLLLLLLLMASTSAFLVPSPIVMPQRRMSSVRAAGLEIGEILPT
LEPTLKVTRVSVEDPAADPPICAYLVEADVHGPDVKRTYNQALKAGTMNA
NFPGFRKGVMPGHALASIMDVCRTAMEMHGLENLPVNERKLRMKVPKTTE
ELAKTYEMGTDLSFACEIDAIGVPGEPKSAPVPLSEV*
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mRNA from alignment at scaffold_57:22746..24913-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10444 ID=mRNA_10444|Name=jgi.p|Nanoce1779_2|353482|organism=Nannochloropsis oceanica|type=mRNA|length=2168bp|location=Sequence derived from alignment at scaffold_57:22746..24913- (Nannochloropsis oceanica)
ACAGGTGCGAGCGGGGATGGGGTGCACCGGGGAAGAAAAAAAGAAGAATG
ATGGCGTCAAGAAGTTGAAGGAAGCAGGAAGTGTGTGAATGGACGGCTTC
GGACACACATTGGCAAATGCTCCTCTTATCCTGTCCATACCTCGCACAAG
TTTGTGGAGTCTAATATTCTTTAATACATTGCCTGTATCACTCCTCTTAC
AGCCTTTGCCGGTCAACCCTTTCGAGCAAATGTCATCACCATCCGCCCTC
CTCCTCCTGCTGCTGCTTCTCATGGCCTCGACTAGCGCCTTCCTTGTCCC
GTCCCCCATCGTAATGCCCCAGCGACGCATGTCTTCCGTGCGCGCTGCAG
GATTGGAGATAGGCGAGATCCTTCCGACGCTCGAACCTACTCTCAAAGTC
ACACGGTATGGAACGAAGGGGGGTGGAGGGTAAGCGAGTGCTTGCGAAAG
AGGAGGGGCAGGGGCAAATGACCTTTACGTCTTGTCCGCAGCCATGTGCA
TGGATTCGGTTCTGATGAGTCACTTTTACCCCTCTGCCCTGGTCATTGCG
ATGGCAGGCCCCTCATGCAGCTAGAGTCGGTGGGGGCGATTCGATCCTCA
CCCAAAGGGGCTCTTCACCATGGTGTTTATTCGTGGCTCAAAAGACACGT
ACAGCAGACCCACACTGATTATGTTGTTCGGGATTGCTGAAACAGTGTGT
TCTGTGTGCATCTCCTTTCCCCCCCATCCACCTCGCTCTCCCTCTTTTCC
TCCCTCCCATCATCCAGCGTCTCGGTGGAAGATCCTGCGGCCGACCCCCC
CATCTGCGCGTATCTGGTGGAAGCTGATGTCCATGGACCGGATGTTAAAA
GAACCTACAACCAAGCGCTGAAAGGTGAGGGGAAAACAGCCAGGAGGGAG
GGAGGGAGGGAGGGAAGAAGGAAGGGCAGGGAGGCGAGTTCCTTCGCGAT
TGGAGGGCTGCGGAGACCCGTGCCTCACCTTCCCTCCCTTATTTCCCATT
CCCCTACCCTCCGACCCAATAACTTGACATAGCCGGCACGATGAACGCCA
ACTTTCCCGGTTTTAGGAAGGGAGTGATGCCCGGCCATGCTTTGGTAGGG
GTGAAGCTCACGGCCATCACAGTACGTGTGTAGGACATCGTTTACACTTT
CTTCCTTTCCTCCTTCCTACATTTTCTCACCTTCCTCCATCCCCCCCTCT
TCTCTTACCCTCCTTTTCTCTCAATTGGTGTCCCGTGCCACTTCTGTCCC
TTTGAATGGAAAAGAATTTGTCTCCTTGATATTTCGCCATTCTCTTCTCA
TGGTCGCCGCCCACGTCCCTAATGACCTGTTACTTGTAGTAATGAGTGTT
CAGGGCCCACTGGTCAGCACCTCCCTTCCGCCCCGCCGTCTCTGATTTCT
CCTGCAAAGACATTTATCCCACTTCTCTTAATGAGTCTCCCTCCTTCCCT
TCCTCCTTCCCTCCCTCAGGCCTCCATTATGGACGTCTGCCGCACAGCCA
TGGAAATGCACGGCCTTGAGAACCTTCCTGTGAATGAACGCAAGCTCCGG
ATGAAGGTGCCCAAGACCACCGAAGAGCTGGCCAAGGTATATATATAGCT
GTCACACCCTCCCTCGTTCCCTTCCTCTCACCCTCCCTTCCTCCCTCCGC
CACGCCACCTTTTAGCTGTCGTTTCATGTGCCGTGCACAGCGTCAATCAC
CAAGTCTTGTCCATTGTATATCCTTGTACCTATACCTGCGGAGATTCCCT
TTACTCCCACGCATTCTCATCCCTCCGTCACTCTTATCTTTAATTATCCT
CCCTCCCACCTCCAATATCCCTTCCTCCCTTACCCTTAAGACATACGAGA
TGGGCACCGACCTTTCATTCGCCTGCGAAATTGACGCGATTGGTGTGCCA
GGAGAGCCAAAATCCGCCCCAGTACCATTATCTGAAGTGTAGAAGTAGGA
GAAGGAGGGGAAAAAGATGCAGGGAGGTAGGTAGGGAGGTAGGGAGGTAT
GACTTGTGTAAAAAGGAGAGGAAAAAGGGTCGTAGGAAAGGAGGAAGAAA
GATTTCTGAAAAAGAAGCTATTGACAATCAAAGACAAAAAAAATTGCCTG
AGCAAGCTGATTTATGAGATTTGAAGTCAGACTTTATGCTTTATGGGTTT
GTACTGTCGAATCGTGCC
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Coding sequence (CDS) from alignment at scaffold_57:22746..24913-

>mRNA_10444 ID=mRNA_10444|Name=jgi.p|Nanoce1779_2|353482|organism=Nannochloropsis oceanica|type=CDS|length=2820bp|location=Sequence derived from alignment at scaffold_57:22746..24913- (Nannochloropsis oceanica)
ACATACGAGATGGGCACCGACCTTTCATTCGCCTGCGAAATTGACGCGAT
TGGTGTGCCAGGAGAGCCAAAATCCGCCCCAGTACCATTATCTGAAGTGT
AGGCCTCCATTATGGACGTCTGCCGCACAGCCATGGAAATGCACGGCCTT
GAGAACCTTCCTGTGAATGAACGCAAGCTCCGGATGAAGGTGCCCAAGAC
CACCGAAGAGCTGGCCAAGCCGGCACGATGAACGCCAACTTTCCCGGTTT
TAGGAAGGGAGTGATGCCCGGCCATGCTTTGCGTCTCGGTGGAAGATCCT
GCGGCCGACCCCCCCATCTGCGCGTATCTGGTGGAAGCTGATGTCCATGG
ACCGGATGTTAAAAGAACCTACAACCAAGCGCTGAAAGATGTCATCACCA
TCCGCCCTCCTCCTCCTGCTGCTGCTTCTCATGGCCTCGACTAGCGCCTT
CCTTGTCCCGTCCCCCATCGTAATGCCCCAGCGACGCATGTCTTCCGTGC
GCGCTGCAGGATTGGAGATAGGCGAGATCCTTCCGACGCTCGAACCTACT
CTCAAAGTCACACGACATACGAGATGGGCACCGACCTTTCATTCGCCTGC
GAAATTGACGCGATTGGTGTGCCAGGAGAGCCAAAATCCGCCCCAGTACC
ATTATCTGAAGTGTAGGCCTCCATTATGGACGTCTGCCGCACAGCCATGG
AAATGCACGGCCTTGAGAACCTTCCTGTGAATGAACGCAAGCTCCGGATG
AAGGTGCCCAAGACCACCGAAGAGCTGGCCAAGCCGGCACGATGAACGCC
AACTTTCCCGGTTTTAGGAAGGGAGTGATGCCCGGCCATGCTTTGCGTCT
CGGTGGAAGATCCTGCGGCCGACCCCCCCATCTGCGCGTATCTGGTGGAA
GCTGATGTCCATGGACCGGATGTTAAAAGAACCTACAACCAAGCGCTGAA
AGATGTCATCACCATCCGCCCTCCTCCTCCTGCTGCTGCTTCTCATGGCC
TCGACTAGCGCCTTCCTTGTCCCGTCCCCCATCGTAATGCCCCAGCGACG
CATGTCTTCCGTGCGCGCTGCAGGATTGGAGATAGGCGAGATCCTTCCGA
CGCTCGAACCTACTCTCAAAGTCACACGACATACGAGATGGGCACCGACC
TTTCATTCGCCTGCGAAATTGACGCGATTGGTGTGCCAGGAGAGCCAAAA
TCCGCCCCAGTACCATTATCTGAAGTGTAGGCCTCCATTATGGACGTCTG
CCGCACAGCCATGGAAATGCACGGCCTTGAGAACCTTCCTGTGAATGAAC
GCAAGCTCCGGATGAAGGTGCCCAAGACCACCGAAGAGCTGGCCAAGCCG
GCACGATGAACGCCAACTTTCCCGGTTTTAGGAAGGGAGTGATGCCCGGC
CATGCTTTGCGTCTCGGTGGAAGATCCTGCGGCCGACCCCCCCATCTGCG
CGTATCTGGTGGAAGCTGATGTCCATGGACCGGATGTTAAAAGAACCTAC
AACCAAGCGCTGAAAGATGTCATCACCATCCGCCCTCCTCCTCCTGCTGC
TGCTTCTCATGGCCTCGACTAGCGCCTTCCTTGTCCCGTCCCCCATCGTA
ATGCCCCAGCGACGCATGTCTTCCGTGCGCGCTGCAGGATTGGAGATAGG
CGAGATCCTTCCGACGCTCGAACCTACTCTCAAAGTCACACGACATACGA
GATGGGCACCGACCTTTCATTCGCCTGCGAAATTGACGCGATTGGTGTGC
CAGGAGAGCCAAAATCCGCCCCAGTACCATTATCTGAAGTGTAGGCCTCC
ATTATGGACGTCTGCCGCACAGCCATGGAAATGCACGGCCTTGAGAACCT
TCCTGTGAATGAACGCAAGCTCCGGATGAAGGTGCCCAAGACCACCGAAG
AGCTGGCCAAGCCGGCACGATGAACGCCAACTTTCCCGGTTTTAGGAAGG
GAGTGATGCCCGGCCATGCTTTGCGTCTCGGTGGAAGATCCTGCGGCCGA
CCCCCCCATCTGCGCGTATCTGGTGGAAGCTGATGTCCATGGACCGGATG
TTAAAAGAACCTACAACCAAGCGCTGAAAGATGTCATCACCATCCGCCCT
CCTCCTCCTGCTGCTGCTTCTCATGGCCTCGACTAGCGCCTTCCTTGTCC
CGTCCCCCATCGTAATGCCCCAGCGACGCATGTCTTCCGTGCGCGCTGCA
GGATTGGAGATAGGCGAGATCCTTCCGACGCTCGAACCTACTCTCAAAGT
CACACGACATACGAGATGGGCACCGACCTTTCATTCGCCTGCGAAATTGA
CGCGATTGGTGTGCCAGGAGAGCCAAAATCCGCCCCAGTACCATTATCTG
AAGTGTAGGCCTCCATTATGGACGTCTGCCGCACAGCCATGGAAATGCAC
GGCCTTGAGAACCTTCCTGTGAATGAACGCAAGCTCCGGATGAAGGTGCC
CAAGACCACCGAAGAGCTGGCCAAGCCGGCACGATGAACGCCAACTTTCC
CGGTTTTAGGAAGGGAGTGATGCCCGGCCATGCTTTGCGTCTCGGTGGAA
GATCCTGCGGCCGACCCCCCCATCTGCGCGTATCTGGTGGAAGCTGATGT
CCATGGACCGGATGTTAAAAGAACCTACAACCAAGCGCTGAAAGATGTCA
TCACCATCCGCCCTCCTCCTCCTGCTGCTGCTTCTCATGGCCTCGACTAG
CGCCTTCCTTGTCCCGTCCCCCATCGTAATGCCCCAGCGACGCATGTCTT
CCGTGCGCGCTGCAGGATTGGAGATAGGCGAGATCCTTCCGACGCTCGAA
CCTACTCTCAAAGTCACACG
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Synonyms
Publications