jgi.p|Nanoce1779_2|611522, mRNA_10441 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611522
Unique Name	mRNA_10441
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1797
Alignment location	scaffold_57:14700..16496 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	611608
Track	FilteredModels2
ProteinId	611522

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_57	supercontig	scaffold_57:14700..16496 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611522	gene_10441	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611522	mRNA_10441-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10441	CDS_10441	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_57:14700..16496+
coding sequence from alignment at scaffold_57:14700..16496+

mRNA sequence

>mRNA_10441 ID=mRNA_10441|Name=jgi.p|Nanoce1779_2|611522|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGGGAGGA
GAGAGTAGTGGAAGAGGAGGTAGTGGAGGTGATGGAGGAAAGAAGGCAAG
GACCCGTCTCACGCCGGGCGGCAAGAAAGCCGTCCACAGTCACAGCAGCA
GCAGCGAAGAAGATGAAGGAGGGAAAGGGAGAGGTGGAGGAGGGGGAACG
GGAAGGCGAGGGAAGAGGGGGGGCATTTGGTGCAGGGTTGGACAGAAAGG
GGTGGTAATGGAGTGTCATAAAGGGAGAGAAGGAAGAGGAGTACAGGGAA
AATATTGATGAACGAGGAAGAAAAACAGTAGTGCCCTGCAATATCTATTT
ATGTATATTCCTATCGTTTTATCCGTGGGGCAGGAAGAATGGGGTGTTCG
AGGTTTTATTTACAATTTTTTGTTCTGGGATACATATATATACATGAGTT
TACATGTAAAAATGTTATTTATATTTTTTCGAGCAGTTGCTTGCGTGCTT
CAGTCGTCACTATCCCCCTCCTTCTTTTCATCCACACACCTGGGCCCCAT
CCAAGTGAGAGTAGTCCCGCCATCATCAACAATGCCATATCAATTTAAGT
GCTTGCCACTCCTGAGGGTTAGGGTGAAACTGTGGTGTCCAAAAAGGCGA
GCGGGTTTTAAATCTTCCACCAAATTTTGGCGCAATTTAGGGTTGGCGCC
TGCCACCTCTTCGCCCTTGTACGACATACCACAAAGCCATGGAGCACTGC
TGCGCCCACAATGCCCGGATATTTCCATTGAAGCCTTTTCCTTTTGCACA
CCCTCCATGTCGCCCGGTCAATCCATAATTGGGGTGACTCGCATCTCACG
CTGGGAGAGCATGGCGACATGTTCTTCTGCGAGAAGAGACGAGAGAGGAC
AGCAAAAGGACGACTCCTCCTGGCCATACGCTACTTCTTCGGGGCTACAT
AGCTTTTCAGTCTCATTACCGACATTCAAGACGCTATGCATCTAGACTGG
CTTCGGCCTCGGTATTTGTGTGCGCAAGCCATCCATGGAAGTTAAAGGCA
AAAGCACGTGGCGTGTGCGTGGCCCATCTGCTTCAATTTTCTCGTTTGTT
CTGCACGTCCCCAACGGAACCCGGGCTACGTCTCACGCTCGCTTCACCCC
CCCAGGGCAAGCTTACTGACAGCGCCCTGTGCACATGGCCTTTAGGGCAT
ACTCAGAGTAGCTTTCAAGATATTGCTGGCGATACTTGTACATGCACGAC
AACAGACGAGATCCTCGTCTGTCTTGCTCCGCTGGCGCCGGAGGACGGGT
GGTGGTCCGTGGCGCCGTGGCCTTGAAATGACCACATTGCACCTTCACCG
CACGAATTCTATCACACACATGCTTTTATGCATATTTGTTCAGCCTTATA
GGCCAGCCAGCCGGTGCAAAAGCGCCACGATATGCCTGTGCGCACGCCAC
GCGATTCCAGGAACGCGGGCGAGTAAGATCGTCTCGATGAGGCGCAGGGA
AGGCTGTGCTTTGTGATTCGTGTGCGCACATCCTTTGCCTTTGGTTCTCG
TACATGATCCGCCTCCTCTTCCTTCCTCCTCTTTTTTGCCTACCTCTCGG
AGCAAGACAACGCAGGACCAGCCCCATGTTGAGGTCTCGAGGCAGCACGA
GGCCGCACGTCCTCTTCTCATTGCCCCTCAATCTCTTAACCACCCTCTTC
TACCCTCATTACACCCACATTTTACTCCTACAGATAGCCAATAGGGAACC
ATGCGGGTTCGAACTTGTCAAAAGGGCGGCCTGGTCCAGCTCCTGGC

protein sequence of jgi.p|Nanoce1779_2|611522

>mRNA_10441-protein ID=mRNA_10441-protein|Name=jgi.p|Nanoce1779_2|611522|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MYIPIVLSVGQEEWGVRGFIYNFLFWDTYIYMSLHVKMLFIFFRAVACVL
QSSLSPSFFSSTHLGPIQVRVVPPSSTMPYQFKCLPLLRVRVKLWCPKRR
AGFKSSTKFWRNLGLAPATSSPLYDIPQSHGALLRPQCPDISIEAFSFCT
PSMSPGQSIIGVTRISRWESMATCSSARRDERGQQKDDSSWPYATSSGLH
SFSVSLPTFKTLCI*

mRNA from alignment at scaffold_57:14700..16496+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10441 ID=mRNA_10441|Name=jgi.p|Nanoce1779_2|611522|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp|location=Sequence derived from alignment at scaffold_57:14700..16496+ (Nannochloropsis oceanica)
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGGGAGGA
GAGAGTAGTGGAAGAGGAGGTAGTGGAGGTGATGGAGGAAAGAAGGCAAG
GACCCGTCTCACGCCGGGCGGCAAGAAAGCCGTCCACAGTCACAGCAGCA
GCAGCGAAGAAGATGAAGGAGGGAAAGGGAGAGGTGGAGGAGGGGGAACG
GGAAGGCGAGGGAAGAGGGGGGGCATTTGGTGCAGGGTTGGACAGAAAGG
GGTGGTAATGGAGTGTCATAAAGGGAGAGAAGGAAGAGGAGTACAGGGAA
AATATTGATGAACGAGGAAGAAAAACAGTAGTGCCCTGCAATATCTATTT
ATGTATATTCCTATCGTTTTATCCGTGGGGCAGGAAGAATGGGGTGTTCG
AGGTTTTATTTACAATTTTTTGTTCTGGGATACATATATATACATGAGTT
TACATGTAAAAATGTTATTTATATTTTTTCGAGCAGTTGCTTGCGTGCTT
CAGTCGTCACTATCCCCCTCCTTCTTTTCATCCACACACCTGGGCCCCAT
CCAAGTGAGAGTAGTCCCGCCATCATCAACAATGCCATATCAATTTAAGT
GCTTGCCACTCCTGAGGGTTAGGGTGAAACTGTGGTGTCCAAAAAGGCGA
GCGGGTTTTAAATCTTCCACCAAATTTTGGCGCAATTTAGGGTTGGCGCC
TGCCACCTCTTCGCCCTTGTACGACATACCACAAAGCCATGGAGCACTGC
TGCGCCCACAATGCCCGGATATTTCCATTGAAGCCTTTTCCTTTTGCACA
CCCTCCATGTCGCCCGGTCAATCCATAATTGGGGTGACTCGCATCTCACG
CTGGGAGAGCATGGCGACATGTTCTTCTGCGAGAAGAGACGAGAGAGGAC
AGCAAAAGGACGACTCCTCCTGGCCATACGCTACTTCTTCGGGGCTACAT
AGCTTTTCAGTCTCATTACCGACATTCAAGACGCTATGCATCTAGACTGG
CTTCGGCCTCGGTATTTGTGTGCGCAAGCCATCCATGGAAGTTAAAGGCA
AAAGCACGTGGCGTGTGCGTGGCCCATCTGCTTCAATTTTCTCGTTTGTT
CTGCACGTCCCCAACGGAACCCGGGCTACGTCTCACGCTCGCTTCACCCC
CCCAGGGCAAGCTTACTGACAGCGCCCTGTGCACATGGCCTTTAGGGCAT
ACTCAGAGTAGCTTTCAAGATATTGCTGGCGATACTTGTACATGCACGAC
AACAGACGAGATCCTCGTCTGTCTTGCTCCGCTGGCGCCGGAGGACGGGT
GGTGGTCCGTGGCGCCGTGGCCTTGAAATGACCACATTGCACCTTCACCG
CACGAATTCTATCACACACATGCTTTTATGCATATTTGTTCAGCCTTATA
GGCCAGCCAGCCGGTGCAAAAGCGCCACGATATGCCTGTGCGCACGCCAC
GCGATTCCAGGAACGCGGGCGAGTAAGATCGTCTCGATGAGGCGCAGGGA
AGGCTGTGCTTTGTGATTCGTGTGCGCACATCCTTTGCCTTTGGTTCTCG
TACATGATCCGCCTCCTCTTCCTTCCTCCTCTTTTTTGCCTACCTCTCGG
AGCAAGACAACGCAGGACCAGCCCCATGTTGAGGTCTCGAGGCAGCACGA
GGCCGCACGTCCTCTTCTCATTGCCCCTCAATCTCTTAACCACCCTCTTC
TACCCTCATTACACCCACATTTTACTCCTACAGATAGCCAATAGGGAACC
ATGCGGGTTCGAACTTGTCAAAAGGGCGGCCTGGTCCAGCTCCTGGC

Coding sequence (CDS) from alignment at scaffold_57:14700..16496+

>mRNA_10441 ID=mRNA_10441|Name=jgi.p|Nanoce1779_2|611522|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_57:14700..16496+ (Nannochloropsis oceanica)
ATGTATATTCCTATCGTTTTATCCGTGGGGCAGGAAGAATGGGGTGTTCG
AGGTTTTATTTACAATTTTTTGTTCTGGGATACATATATATACATGAGTT
TACATGTAAAAATGTTATTTATATTTTTTCGAGCAGTTGCTTGCGTGCTT
CAGTCGTCACTATCCCCCTCCTTCTTTTCATCCACACACCTGGGCCCCAT
CCAAGTGAGAGTAGTCCCGCCATCATCAACAATGCCATATCAATTTAAGT
GCTTGCCACTCCTGAGGGTTAGGGTGAAACTGTGGTGTCCAAAAAGGCGA
GCGGGTTTTAAATCTTCCACCAAATTTTGGCGCAATTTAGGGTTGGCGCC
TGCCACCTCTTCGCCCTTGTACGACATACCACAAAGCCATGGAGCACTGC
TGCGCCCACAATGCCCGGATATTTCCATTGAAGCCTTTTCCTTTTGCACA
CCCTCCATGTCGCCCGGTCAATCCATAATTGGGGTGACTCGCATCTCACG
CTGGGAGAGCATGGCGACATGTTCTTCTGCGAGAAGAGACGAGAGAGGAC
AGCAAAAGGACGACTCCTCCTGGCCATACGCTACTTCTTCGGGGCTACAT
AGCTTTTCAGTCTCATTACCGACATTCAAGACGCTATGCATCTAG

Synonyms

Publications