jgi.p|Nanoce1779_2|575118, mRNA_1044 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575118
Unique Name	mRNA_1044
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1525
Alignment location	scaffold_2:1084519..1086539 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575204
Track	FilteredModels2
ProteinId	575118

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1084519..1086539 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575118	gene_1044	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575118	mRNA_1044-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1044	CDS_1044	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1084519..1086539+
coding sequence from alignment at scaffold_2:1084519..1086539+

mRNA sequence

>mRNA_1044 ID=mRNA_1044|Name=jgi.p|Nanoce1779_2|575118|organism=Nannochloropsis oceanica|type=mRNA|length=1525bp
ATGCGCAAATAGATGTCCTTTTCCCCGTGGTATTTGCCGTCTTGGCGGCT
GTTTGGATTGGAATGGACCTCATGAGCAGCAGCAGCAGCAGCAGTCTGAC
GGGGGACCGCCTGGTGTTAATGGTATTCGTTGGGTTTTCTTTCCTTCGTG
TCTTCTGGGAGAGGCGACAGGAGAAGAAATATGCCACCGCACAAGCGTCC
AATGAAGATATGATTTTGAAGGTTTCCATTGGCGACTACCACCTCGGTGG
GGAGGACGGGGAGGAGGAAGACCCCTTCGCCATCCCTCCTATCCCTGAGC
GATTTATCAATGGGTGCTTTGGTGATTTGGTGGAGGCAGAGCGAAGATGG
AGGGTGACTCTAGCGTGGAGAAATGACTTTGGAACGGATGGGATACTCGA
GCGGGAGCACCCTATGTTTGATATTGTCAAACAGAGCCTGCCAGCTTTTT
ATTGCGGGACTGCAAAGGATGGGAATCCGGTTTATTATGAGAGATCGGGA
CAGACAGATTTGCAGAAGGCAAGGCAGTGTGGCATTGATTGGATGGTGTA
TAACTATGTGCATTCTACGGAGTTTGTGTTCAAGGTGTTACATCCCAGAG
AGACCGCCAAGACGGTAACTATTTTCGATGTGGACGGGCTTTCGCTTGGC
AGCGTTGCAGGCGAGCCTTTGGAGTTTATTCGGAGGGCAAGCCATGTGAT
GCAGGAACACTACCCCGAGCGATGCCGTGTCATCATAATTTGCAATTGCC
CGTCTTGGTTTAGTTTTGTCTGGAAATTGATTAGGCCCCTTGTCAATGAG
ACGACGCAGAAAAAAATCAAGATTGTCAGCAAATTCGGTACTTTTGCTGC
CATCAATGAATTTGTTGAGGCTGATCAGATCCCCGTCGAATATGGAGGAA
CGCTCCGCTTTGGGGATGGGGAAGATAGCTGTCGCTGGCACTGCCCGGAG
GAAGTGAGATTGCGCGAACTTGTGTATGCAGTCAACGAGAGATTCAGGGC
TGAGAGGGCTGCAAGGGAGGAGCCGGAGCCGGATTGGATGGAGCCGACGT
ATCGTTGAGAAGCAGTGAGGAAAGAGGGAAGAGCTGAAAAGCCGTGGGCG
ATGGAATGGAGAATGGATGACTGGGAGTAGGGAGAGGGGAAATTAGGGTA
ATTGACCGGAGAAAGAGCACGCGCAAAATATGGAGAGGAAGGGAAGAGCA
ACACGTGGTGTTGACATTCCACAGATTCAAATGAACATGGGCATCACATA
ACAATCAAACAAATTTTGTCTTTCTCAAGAAGTGATTGATTCAAGAATAT
AATGAACCGGCTGGGTTTCGGCCCCCTCCCATTGTGACAAGGATGATAAC
GCATCGGGACGTTTGCCTGCGTTTGGATTGATCAAGCGAGCATTACCCGA
GCAGGAAGGAAGTAAATCTTGAATCATAACGAAGAAAGAAACATGCAGAC
AAGTGGAACGAGAGAAGATAGACGTGGCTCACAAGCCGAAAAGAGGCCGA
GCGCCCGCAGTTGGTTTAGCAGACA

protein sequence of jgi.p|Nanoce1779_2|575118

>mRNA_1044-protein ID=mRNA_1044-protein|Name=jgi.p|Nanoce1779_2|575118|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MDLMSSSSSSSLTGDRLVLMVFVGFSFLRVFWERRQEKKYATAQASNEDM
ILKVSIGDYHLGGEDGEEEDPFAIPPIPERFINGCFGDLVEAERRWRVTL
AWRNDFGTDGILEREHPMFDIVKQSLPAFYCGTAKDGNPVYYERSGQTDL
QKARQCGIDWMVYNYVHSTEFVFKVLHPRETAKTVTIFDVDGLSLGSVAG
EPLEFIRRASHVMQEHYPERCRVIIICNCPSWFSFVWKLIRPLVNETTQK
KIKIVSKFGTFAAINEFVEADQIPVEYGGTLRFGDGEDSCRWHCPEEVRL
RELVYAVNERFRAERAAREEPEPDWMEPTYR*

mRNA from alignment at scaffold_2:1084519..1086539+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1044 ID=mRNA_1044|Name=jgi.p|Nanoce1779_2|575118|organism=Nannochloropsis oceanica|type=mRNA|length=2021bp|location=Sequence derived from alignment at scaffold_2:1084519..1086539+ (Nannochloropsis oceanica)
ATGCGCAAATAGATGTCCTTTTCCCCGTGGTATTTGCCGTCTTGGCGGCT
GTTTGGATTGGAATGGACCTCATGAGCAGCAGCAGCAGCAGCAGTCTGAC
GGGGGACCGCCTGGTGTTAATGGTATTCGTTGGGTTTTCTTTCCTTCGTG
TCTTCTGGGAGAGGCGACAGGAGAAGAAATATGCCACCGCACAAGCGTCC
AATGAAGATATGATTTTGAAGGTTTCCATTGGCGACTACCACCTCGGTGG
GGAGGACGGGGAGGAGGAAGACCCCTTCGCCATCCCTCCTATCCCTGAGC
GATTTATCAATGGGTGCTTTGGTGATTTGGTGGAGGCAGAGCGAAGATGG
AGGGTGACTCTAGCGTGGAGAAATGACTTTGGAACGGATGGGATACTCGA
GCGGGAGCACCCTATGTTTGATATTGTCAAACAGAGCCTGCCAGCTTTTT
ATTGCGGGACTGCAAAGGATGGGAATCCGGTTTATTATGAGAGATCGGGA
CAGACAGATTTGCAGAAGGCAAGGCAGTGTGGCATTGATTGGATGGTGTA
TAACTATGTGCATTCTACGGAGGTACGTGAGAAAGGAGGACAGTGTGCCT
GTAGAAATGTGTTGGGGCGGGGGGGTAGTTTTATCTTTTTCTCTGATCGA
CTTTTTGAGTTTTTCTGATGTATTTATCGGTCATTACAGAATGCTGAGCC
ATTCATTCCTGGCTCCTCCCACTCATTCTTCTTGTTCTTTTCCTCCCCTT
TTTCTAAGTTTGTGTTCAAGGTGTTACATCCCAGAGAGACCGCCAAGACG
GTAACTATTTTCGATGTGGACGGGCTTTCGCTTGGCAGCGTTGCAGGCGA
GCCTTTGGAGTTTATTCGGAGGGCAAGCCATGTGATGCAGGTACGCACAA
GGATGAATAAAAATTAGAGGATAAGAGTCATGGAGGGATAATAGAAGGAG
AAAGAGGAGAGTTACGATAATTGGGTCTTGCAAGAGACTCAGACGAGGGA
AATCATCTCGAGCTGACAGTCGTGGACTTCCGTCTTCCAACTTTTACCAC
CATGCCAATTACCCCTTCTCACCTCTCCACAGGAACACTACCCCGAGCGA
TGCCGTGTCATCATAATTTGCAATTGCCCGTCTTGGTTTAGTTTTGTCTG
GAAATTGATTAGGCCCCTTGTCAATGAGACGACGCAGAAAAAAATCAAGG
TACGTGCGTGCTTCACTATCAAAAAGATGAAAAAAGAGCGGCCTTTTTGA
ATTGCAGGTACTGACCGCTTACATGTATTGATACTTTCTCCTTTGTCTCT
TCCCAAATCTTTATCAGATTGTCAGCAAATTCGGTACTTTTGCTGCCATC
AATGAATTTGTTGAGGCTGATCAGATCCCCGTCGAATATGGAGGAACGCT
CCGCTTTGGGGATGGGGAAGATAGCTGTCGCTGGCACTGCCCGGAGGAAG
TGAGATTGCGCGAACTTGTGTATGCAGTCAACGAGAGATTCAGGGCTGAG
AGGGCTGCAAGGGAGGAGCCGGAGCCGGATTGGATGGAGCCGACGTATCG
TTGAGAAGCAGTGAGGAAAGAGGGAAGAGCTGAAAAGCCGTGGGCGATGG
AATGGAGAATGGATGACTGGGAGTAGGGAGAGGGGAAATTAGGGTAATTG
ACCGGAGAAAGAGCACGCGCAAAATATGGAGAGGAAGGGAAGAGCAACAC
GTGGTGTTGACATTCCACAGATTCAAATGAACATGGGCATCACATAACAA
TCAAACAAATTTTGTCTTTCTCAAGAAGTGATTGATTCAAGAATATAATG
AACCGGCTGGGTTTCGGCCCCCTCCCATTGTGACAAGGATGATAACGCAT
CGGGACGTTTGCCTGCGTTTGGATTGATCAAGCGAGCATTACCCGAGCAG
GAAGGAAGTAAATCTTGAATCATAACGAAGAAAGAAACATGCAGACAAGT
GGAACGAGAGAAGATAGACGTGGCTCACAAGCCGAAAAGAGGCCGAGCGC
CCGCAGTTGGTTTAGCAGACA

Coding sequence (CDS) from alignment at scaffold_2:1084519..1086539+

>mRNA_1044 ID=mRNA_1044|Name=jgi.p|Nanoce1779_2|575118|organism=Nannochloropsis oceanica|type=CDS|length=3984bp|location=Sequence derived from alignment at scaffold_2:1084519..1086539+ (Nannochloropsis oceanica)
ATGGACCTCATGAGCAGCAGCAGCAGCAGCAGTCTGACGGGGGACCGCCT
GGTGTTAATGGTATTCGTTGGGTTTTCTTTCCTTCGTGTCTTCTGGGAGA
GGCGACAGGAGAAGAAATATGCCACCGCACAAGCGTCCAATGAAGATATG
ATTTTGAAGGTTTCCATTGGCGACTACCACCTCGGTGGGGAGGACGGGGA
GGAGGAAGACCCCTTCGCCATCCCTCCTATCCCTGAGCGATTTATCAATG
GGTGCTTTGGTGATTTGGTGGAGGCAGAGCGAAGATGGAGGGTGACTCTA
GCGTGGAGAAATGACTTTGGAACGGATGGGATACTCGAGCGGGAGCACCC
TATGTTTGATATTGTCAAACAGAGCCTGCCAGCTTTTTATTGCGGGACTG
CAAAGGATGGGAATCCGGTTTATTATGAGAGATCGGGACAGACAGATTTG
CAGAAGGCAAGGCAGTGTGGCATTGATTGGATGGTGTATAACTATGTGCA
TTCTACGGAGTTTGTGTTCAAGGTGTTACATCCCAGAGAGACCGCCAAGA
CGGTAACTATTTTCGATGTGGACGGGCTTTCGCTTGGCAGCGTTGCAGGC
GAGCCTTTGGAGTTTATTCGGAGGGCAAGCCATGTGATGCAGGAACACTA
CCCCGAGCGATGCCGTGTCATCATAATTTGCAATTGCCCGTCTTGGTTTA
GTTTTGTCTGGAAATTGATTAGGCCCCTTGTCAATGAGACGACGCAGAAA
AAAATCAAGATTGTCAGCAAATTCGGTACTTTTGCTGCCATCAATGAATT
TGTTGAGGCTGATCAGATCCCCGTCGAATATGGAGGAACGCTCCGCTTTG
GGGATGGGGAAGATAGCTGTCGCTGGCACTGCCCGGAGGAAGTGAGATTG
CGCGAACTTGTGTATGCAGTCAACGAGAGATTCAGGGCTGAGAGGGCTGC
AAGGGAGGAGCCGGAGCCGGATTGGATGGAGCCGACGTATCGTTGAATGG
ACCTCATGAGCAGCAGCAGCAGCAGCAGTCTGACGGGGGACCGCCTGGTG
TTAATGGTATTCGTTGGGTTTTCTTTCCTTCGTGTCTTCTGGGAGAGGCG
ACAGGAGAAGAAATATGCCACCGCACAAGCGTCCAATGAAGATATGATTT
TGAAGGTTTCCATTGGCGACTACCACCTCGGTGGGGAGGACGGGGAGGAG
GAAGACCCCTTCGCCATCCCTCCTATCCCTGAGCGATTTATCAATGGGTG
CTTTGGTGATTTGGTGGAGGCAGAGCGAAGATGGAGGGTGACTCTAGCGT
GGAGAAATGACTTTGGAACGGATGGGATACTCGAGCGGGAGCACCCTATG
TTTGATATTGTCAAACAGAGCCTGCCAGCTTTTTATTGCGGGACTGCAAA
GGATGGGAATCCGGTTTATTATGAGAGATCGGGACAGACAGATTTGCAGA
AGGCAAGGCAGTGTGGCATTGATTGGATGGTGTATAACTATGTGCATTCT
ACGGAGTTTGTGTTCAAGGTGTTACATCCCAGAGAGACCGCCAAGACGGT
AACTATTTTCGATGTGGACGGGCTTTCGCTTGGCAGCGTTGCAGGCGAGC
CTTTGGAGTTTATTCGGAGGGCAAGCCATGTGATGCAGGAACACTACCCC
GAGCGATGCCGTGTCATCATAATTTGCAATTGCCCGTCTTGGTTTAGTTT
TGTCTGGAAATTGATTAGGCCCCTTGTCAATGAGACGACGCAGAAAAAAA
TCAAGATTGTCAGCAAATTCGGTACTTTTGCTGCCATCAATGAATTTGTT
GAGGCTGATCAGATCCCCGTCGAATATGGAGGAACGCTCCGCTTTGGGGA
TGGGGAAGATAGCTGTCGCTGGCACTGCCCGGAGGAAGTGAGATTGCGCG
AACTTGTGTATGCAGTCAACGAGAGATTCAGGGCTGAGAGGGCTGCAAGG
GAGGAGCCGGAGCCGGATTGGATGGAGCCGACGTATCGTTGAATGGACCT
CATGAGCAGCAGCAGCAGCAGCAGTCTGACGGGGGACCGCCTGGTGTTAA
TGGTATTCGTTGGGTTTTCTTTCCTTCGTGTCTTCTGGGAGAGGCGACAG
GAGAAGAAATATGCCACCGCACAAGCGTCCAATGAAGATATGATTTTGAA
GGTTTCCATTGGCGACTACCACCTCGGTGGGGAGGACGGGGAGGAGGAAG
ACCCCTTCGCCATCCCTCCTATCCCTGAGCGATTTATCAATGGGTGCTTT
GGTGATTTGGTGGAGGCAGAGCGAAGATGGAGGGTGACTCTAGCGTGGAG
AAATGACTTTGGAACGGATGGGATACTCGAGCGGGAGCACCCTATGTTTG
ATATTGTCAAACAGAGCCTGCCAGCTTTTTATTGCGGGACTGCAAAGGAT
GGGAATCCGGTTTATTATGAGAGATCGGGACAGACAGATTTGCAGAAGGC
AAGGCAGTGTGGCATTGATTGGATGGTGTATAACTATGTGCATTCTACGG
AGTTTGTGTTCAAGGTGTTACATCCCAGAGAGACCGCCAAGACGGTAACT
ATTTTCGATGTGGACGGGCTTTCGCTTGGCAGCGTTGCAGGCGAGCCTTT
GGAGTTTATTCGGAGGGCAAGCCATGTGATGCAGGAACACTACCCCGAGC
GATGCCGTGTCATCATAATTTGCAATTGCCCGTCTTGGTTTAGTTTTGTC
TGGAAATTGATTAGGCCCCTTGTCAATGAGACGACGCAGAAAAAAATCAA
GATTGTCAGCAAATTCGGTACTTTTGCTGCCATCAATGAATTTGTTGAGG
CTGATCAGATCCCCGTCGAATATGGAGGAACGCTCCGCTTTGGGGATGGG
GAAGATAGCTGTCGCTGGCACTGCCCGGAGGAAGTGAGATTGCGCGAACT
TGTGTATGCAGTCAACGAGAGATTCAGGGCTGAGAGGGCTGCAAGGGAGG
AGCCGGAGCCGGATTGGATGGAGCCGACGTATCGTTGAATGGACCTCATG
AGCAGCAGCAGCAGCAGCAGTCTGACGGGGGACCGCCTGGTGTTAATGGT
ATTCGTTGGGTTTTCTTTCCTTCGTGTCTTCTGGGAGAGGCGACAGGAGA
AGAAATATGCCACCGCACAAGCGTCCAATGAAGATATGATTTTGAAGGTT
TCCATTGGCGACTACCACCTCGGTGGGGAGGACGGGGAGGAGGAAGACCC
CTTCGCCATCCCTCCTATCCCTGAGCGATTTATCAATGGGTGCTTTGGTG
ATTTGGTGGAGGCAGAGCGAAGATGGAGGGTGACTCTAGCGTGGAGAAAT
GACTTTGGAACGGATGGGATACTCGAGCGGGAGCACCCTATGTTTGATAT
TGTCAAACAGAGCCTGCCAGCTTTTTATTGCGGGACTGCAAAGGATGGGA
ATCCGGTTTATTATGAGAGATCGGGACAGACAGATTTGCAGAAGGCAAGG
CAGTGTGGCATTGATTGGATGGTGTATAACTATGTGCATTCTACGGAGTT
TGTGTTCAAGGTGTTACATCCCAGAGAGACCGCCAAGACGGTAACTATTT
TCGATGTGGACGGGCTTTCGCTTGGCAGCGTTGCAGGCGAGCCTTTGGAG
TTTATTCGGAGGGCAAGCCATGTGATGCAGGAACACTACCCCGAGCGATG
CCGTGTCATCATAATTTGCAATTGCCCGTCTTGGTTTAGTTTTGTCTGGA
AATTGATTAGGCCCCTTGTCAATGAGACGACGCAGAAAAAAATCAAGATT
GTCAGCAAATTCGGTACTTTTGCTGCCATCAATGAATTTGTTGAGGCTGA
TCAGATCCCCGTCGAATATGGAGGAACGCTCCGCTTTGGGGATGGGGAAG
ATAGCTGTCGCTGGCACTGCCCGGAGGAAGTGAGATTGCGCGAACTTGTG
TATGCAGTCAACGAGAGATTCAGGGCTGAGAGGGCTGCAAGGGAGGAGCC
GGAGCCGGATTGGATGGAGCCGACGTATCGTTGA

Synonyms

Publications