jgi.p|Nanoce1779_2|611511, mRNA_10439 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611511
Unique NamemRNA_10439
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length848
Alignment locationscaffold_57:9147..10857 -

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Properties
Property NameValue
TranscriptId611597
TrackFilteredModels2
ProteinId611511
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:9147..10857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611511gene_10439Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611511mRNA_10439-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10439CDS_10439Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10439 ID=mRNA_10439|Name=jgi.p|Nanoce1779_2|611511|organism=Nannochloropsis oceanica|type=mRNA|length=848bp
AGGGAGGGAGGGAGGCGGCACACTCTGACCACCTTCCCTTCTCATCGTTT
CGTGATTGTGCCACCTCCCTCCCTCAGATCTCAGAGATGATAGACCAGCA
CATGCGGCTGCTCAAGGTGGACATGGGGAATTTTCAAACCGAGCTCAGAG
AAACGGGGGAATATGACTTCCTCGGTGCCCGCAAGGGCGACTCCGTGGCC
TTCAAGCAAAATGTCTACGAGACTCATTTCGTGCTGGGGAAGGTGGCGGC
GTACAGGGGCGAGAGCGGATCGTACGAGGTGGTCGACGTGGACGACGACC
TACGCGTGTACACTCTACCCGAGACGCAGGTGGTTCTCCTCAACCCCGGC
TCCGAAGCCCAGCGGCTCAAGTACCAAAAAGGCGACGAGGTTTTCGCAGT
ATACCCGGAAACCACCTCCTTCTATCTGGGCACCATTGCGCAGCCTCCTC
GTCGCGGGGTGGGTCATGGCGGGCCAGGACAGGACGTGCCCAAACTGGCA
GTGCAGTTCCAGGACGATGCGGACGAGACGGGCTTCACGCCGATCCGGTG
GGTGCCGGTGCAACACATCTTCAAAGCCATCTAATCAGAGTCAGATTAAA
AAAAAATGAAAATCTAATCAGAGTCAGATCGAGATTGACAGCCATCTAAT
CAAATCAGAGTTAGTTTAGGAATGGACAAAGAGGGAGAGGGGAGAAGGGG
AGAAGGAGAGGACCGGAGACGAGAGACAAGAGAGACCCCTGTATACACCG
CCTGTACATACGTGCGAAATTAATCAAATCAATCGAATGATCAACGACGG
ATAAAGAAGGAAAGATGATACAGGAAGGCATGGAGAGGGGAGAGAAAG
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protein sequence of jgi.p|Nanoce1779_2|611511

>mRNA_10439-protein ID=mRNA_10439-protein|Name=jgi.p|Nanoce1779_2|611511|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MIDQHMRLLKVDMGNFQTELRETGEYDFLGARKGDSVAFKQNVYETHFVL
GKVAAYRGESGSYEVVDVDDDLRVYTLPETQVVLLNPGSEAQRLKYQKGD
EVFAVYPETTSFYLGTIAQPPRRGVGHGGPGQDVPKLAVQFQDDADETGF
TPIRWVPVQHIFKAI*
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mRNA from alignment at scaffold_57:9147..10857-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10439 ID=mRNA_10439|Name=jgi.p|Nanoce1779_2|611511|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp|location=Sequence derived from alignment at scaffold_57:9147..10857- (Nannochloropsis oceanica)
AGGGAGGGAGGGAGGCGGCACACTCTGACCACCTTCCCTTCTCATCGTTT
CGTGATTGTGCCACCTCCCTCCCTCAGATCTCAGAGATGATAGACCAGCA
CATGCGGCTGCTCAAGGTGGACATGGGGAATTTTCAAACCGAGCTCAGAG
AAACGGGGGAATATGACTTCCTCGGTGCCCGCAAGGTACCGCCCTCCCTC
CCTCCCTTCCTCCCTTTCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTTCCTTGACACTTTCTCCCTCCCTCCACACTTTC
TCCCCCCCCCCCCCTCCCCCCCTCCCTCCCTCTCCAGGGCGACTCCGTGG
CCTTCAAGCAAAATGTCTACGAGACTCATTTCGTGCTGGGGAAGGTGGCG
GCGTACAGGGGCGAGAGCGGATCGTACGAGGTGGTCGACGTGGACGACGA
CCTACGCGTGTACACTCTACCCGAGACGCAGGTAAGTAAACCCCCCTCCC
TCCCCCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCGCTTCTGGTGGTCTTCCTCCACCCCGACTTCCACGAC
CCATCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAGG
TGGTTCTCCTCAACCCCGGCTCCGAAGCCCAGCGGCTCAAGTACCAAAAA
GGCGACGAGGTTTTCGCAGTATACCCGGAAACCACCTCCTTCTATCTGGG
TAAGAGGGAGGGCGGGAGGGGAGGGCGGGAGGGAGGGCGGGACGGAGGGA
GGGAGGGGGGGAGGGAGGAAAGGAGGAAGAGTTGCTGCGGGGTCATTCTG
GGACATCCCACCCACCCTCCGTCCCTCCCTTCCTCCCTCCCTCCCTCGTT
TCCTTCCTTCGCCGCTTCCTCAGCACTATTCCTCGACATTATTGCGTAGC
CTCTTCGTAACAGAAGGAATCGAAAATCTCCAACTTATCTTTTCCGTCCC
TCCCTCCCTCCCGCCGTCCGTCCCTCCCTCCCTAGGCACCATTGCGCAGC
CTCCTCGTCGCGGGGTGGGTCATGGCGGGCCAGGACAGGACGTGCCCAAA
CTGGCAGTGCAGTTCCAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACAAGCAACTGC
TTTCCATCCTAGGAAGATGGAGGGAGGGAGGGAGGGCGGGCGGGAGTCAG
ACTTATTCGCAGCACCGCCATGGCACACGCACCAGGTCCAGGTGGGGATG
TAGCAATAATTCTACACCCACACACCTAGACCCACACACACCTAACCCCC
CTCCCTCACTCCCATATCCATGCAGGACGATGCGGACGAGACGGGCTTCA
CGCCGATCCGGTGGGTGCCGGTGCAACACATCTTCAAAGCCATCTAATCA
GAGTCAGATTAAAAAAAAATGAAAATCTAATCAGAGTCAGATCGAGATTG
ACAGCCATCTAATCAAATCAGAGTTAGTTTAGGAATGGACAAAGAGGGAG
AGGGGAGAAGGGGAGAAGGAGAGGACCGGAGACGAGAGACAAGAGAGACC
CCTGTATACACCGCCTGTACATACGTGCGAAATTAATCAAATCAATCGAA
TGATCAACGACGGATAAAGAAGGAAAGATGATACAGGAAGGCATGGAGAG
GGGAGAGAAAG
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Coding sequence (CDS) from alignment at scaffold_57:9147..10857-

>mRNA_10439 ID=mRNA_10439|Name=jgi.p|Nanoce1779_2|611511|organism=Nannochloropsis oceanica|type=CDS|length=2490bp|location=Sequence derived from alignment at scaffold_57:9147..10857- (Nannochloropsis oceanica)
GACGATGCGGACGAGACGGGCTTCACGCCGATCCGGTGGGTGCCGGTGCA
ACACATCTTCAAAGCCATCTAAGCACCATTGCGCAGCCTCCTCGTCGCGG
GGTGGGTCATGGCGGGCCAGGACAGGACGTGCCCAAACTGGCAGTGCAGT
TCCAGGTGGTTCTCCTCAACCCCGGCTCCGAAGCCCAGCGGCTCAAGTAC
CAAAAAGGCGACGAGGTTTTCGCAGTATACCCGGAAACCACCTCCTTCTA
TCTGGGGCGACTCCGTGGCCTTCAAGCAAAATGTCTACGAGACTCATTTC
GTGCTGGGGAAGGTGGCGGCGTACAGGGGCGAGAGCGGATCGTACGAGGT
GGTCGACGTGGACGACGACCTACGCGTGTACACTCTACCCGAGACGCAGA
TGATAGACCAGCACATGCGGCTGCTCAAGGTGGACATGGGGAATTTTCAA
ACCGAGCTCAGAGAAACGGGGGAATATGACTTCCTCGGTGCCCGCAAGGA
CGATGCGGACGAGACGGGCTTCACGCCGATCCGGTGGGTGCCGGTGCAAC
ACATCTTCAAAGCCATCTAAGCACCATTGCGCAGCCTCCTCGTCGCGGGG
TGGGTCATGGCGGGCCAGGACAGGACGTGCCCAAACTGGCAGTGCAGTTC
CAGGTGGTTCTCCTCAACCCCGGCTCCGAAGCCCAGCGGCTCAAGTACCA
AAAAGGCGACGAGGTTTTCGCAGTATACCCGGAAACCACCTCCTTCTATC
TGGGGCGACTCCGTGGCCTTCAAGCAAAATGTCTACGAGACTCATTTCGT
GCTGGGGAAGGTGGCGGCGTACAGGGGCGAGAGCGGATCGTACGAGGTGG
TCGACGTGGACGACGACCTACGCGTGTACACTCTACCCGAGACGCAGATG
ATAGACCAGCACATGCGGCTGCTCAAGGTGGACATGGGGAATTTTCAAAC
CGAGCTCAGAGAAACGGGGGAATATGACTTCCTCGGTGCCCGCAAGGACG
ATGCGGACGAGACGGGCTTCACGCCGATCCGGTGGGTGCCGGTGCAACAC
ATCTTCAAAGCCATCTAAGCACCATTGCGCAGCCTCCTCGTCGCGGGGTG
GGTCATGGCGGGCCAGGACAGGACGTGCCCAAACTGGCAGTGCAGTTCCA
GGTGGTTCTCCTCAACCCCGGCTCCGAAGCCCAGCGGCTCAAGTACCAAA
AAGGCGACGAGGTTTTCGCAGTATACCCGGAAACCACCTCCTTCTATCTG
GGGCGACTCCGTGGCCTTCAAGCAAAATGTCTACGAGACTCATTTCGTGC
TGGGGAAGGTGGCGGCGTACAGGGGCGAGAGCGGATCGTACGAGGTGGTC
GACGTGGACGACGACCTACGCGTGTACACTCTACCCGAGACGCAGATGAT
AGACCAGCACATGCGGCTGCTCAAGGTGGACATGGGGAATTTTCAAACCG
AGCTCAGAGAAACGGGGGAATATGACTTCCTCGGTGCCCGCAAGGACGAT
GCGGACGAGACGGGCTTCACGCCGATCCGGTGGGTGCCGGTGCAACACAT
CTTCAAAGCCATCTAAGCACCATTGCGCAGCCTCCTCGTCGCGGGGTGGG
TCATGGCGGGCCAGGACAGGACGTGCCCAAACTGGCAGTGCAGTTCCAGG
TGGTTCTCCTCAACCCCGGCTCCGAAGCCCAGCGGCTCAAGTACCAAAAA
GGCGACGAGGTTTTCGCAGTATACCCGGAAACCACCTCCTTCTATCTGGG
GCGACTCCGTGGCCTTCAAGCAAAATGTCTACGAGACTCATTTCGTGCTG
GGGAAGGTGGCGGCGTACAGGGGCGAGAGCGGATCGTACGAGGTGGTCGA
CGTGGACGACGACCTACGCGTGTACACTCTACCCGAGACGCAGATGATAG
ACCAGCACATGCGGCTGCTCAAGGTGGACATGGGGAATTTTCAAACCGAG
CTCAGAGAAACGGGGGAATATGACTTCCTCGGTGCCCGCAAGGACGATGC
GGACGAGACGGGCTTCACGCCGATCCGGTGGGTGCCGGTGCAACACATCT
TCAAAGCCATCTAAGCACCATTGCGCAGCCTCCTCGTCGCGGGGTGGGTC
ATGGCGGGCCAGGACAGGACGTGCCCAAACTGGCAGTGCAGTTCCAGGTG
GTTCTCCTCAACCCCGGCTCCGAAGCCCAGCGGCTCAAGTACCAAAAAGG
CGACGAGGTTTTCGCAGTATACCCGGAAACCACCTCCTTCTATCTGGGGC
GACTCCGTGGCCTTCAAGCAAAATGTCTACGAGACTCATTTCGTGCTGGG
GAAGGTGGCGGCGTACAGGGGCGAGAGCGGATCGTACGAGGTGGTCGACG
TGGACGACGACCTACGCGTGTACACTCTACCCGAGACGCAGATGATAGAC
CAGCACATGCGGCTGCTCAAGGTGGACATGGGGAATTTTCAAACCGAGCT
CAGAGAAACGGGGGAATATGACTTCCTCGGTGCCCGCAAG
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Synonyms
Publications