jgi.p|Nanoce1779_2|611506, mRNA_10438 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611506
Unique NamemRNA_10438
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length372
Alignment locationscaffold_57:7277..7648 +

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Properties
Property NameValue
TranscriptId611592
TrackFilteredModels2
ProteinId611506
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:7277..7648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611506gene_10438Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611506mRNA_10438-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10438CDS_10438Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10438 ID=mRNA_10438|Name=jgi.p|Nanoce1779_2|611506|organism=Nannochloropsis oceanica|type=mRNA|length=372bp
ATGTACTGTCCTTTTCTCCTCCTTCTCCTTCGCCTCCTTCTCCTTCTCCT
CCTTTTCCTCCTTCTCCTCCTTCGCTATCTTCTCCTCCTCTTGTTCCTCC
TTCTCCTCCTCCTCTTCTTCCTCCACCCGGATCCCTCTCACTCTCTTCTC
CCCCTCCCTCTCCTGCCCCCTCGAACGACCCACACCTGTCCTCGTTCTAC
CTCCCGAGACCAAACGGAGAAAAGGCAGCAGCATGACCACAGCAGTCACT
ACTGGTGCCAGCGCCTCTTCCTTCCTCCAACCCTCCCTCCCTCCCTCTTC
CTCCTTCGCCTCCTCCTCCTCCTCCCCCTCGTCGGAAATGGAATGGGCGC
CGCTGGTGGATTTTTTCACTGA
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protein sequence of jgi.p|Nanoce1779_2|611506

>mRNA_10438-protein ID=mRNA_10438-protein|Name=jgi.p|Nanoce1779_2|611506|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MYCPFLLLLLRLLLLLLLFLLLLLRYLLLLLFLLLLLLFFLHPDPSHSLL
PLPLLPPRTTHTCPRSTSRDQTEKRQQHDHSSHYWCQRLFLPPTLPPSLF
LLRLLLLLPLVGNGMGAAGGFFH*
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mRNA from alignment at scaffold_57:7277..7648+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10438 ID=mRNA_10438|Name=jgi.p|Nanoce1779_2|611506|organism=Nannochloropsis oceanica|type=mRNA|length=372bp|location=Sequence derived from alignment at scaffold_57:7277..7648+ (Nannochloropsis oceanica)
ATGTACTGTCCTTTTCTCCTCCTTCTCCTTCGCCTCCTTCTCCTTCTCCT
CCTTTTCCTCCTTCTCCTCCTTCGCTATCTTCTCCTCCTCTTGTTCCTCC
TTCTCCTCCTCCTCTTCTTCCTCCACCCGGATCCCTCTCACTCTCTTCTC
CCCCTCCCTCTCCTGCCCCCTCGAACGACCCACACCTGTCCTCGTTCTAC
CTCCCGAGACCAAACGGAGAAAAGGCAGCAGCATGACCACAGCAGTCACT
ACTGGTGCCAGCGCCTCTTCCTTCCTCCAACCCTCCCTCCCTCCCTCTTC
CTCCTTCGCCTCCTCCTCCTCCTCCCCCTCGTCGGAAATGGAATGGGCGC
CGCTGGTGGATTTTTTCACTGA
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Coding sequence (CDS) from alignment at scaffold_57:7277..7648+

>mRNA_10438 ID=mRNA_10438|Name=jgi.p|Nanoce1779_2|611506|organism=Nannochloropsis oceanica|type=CDS|length=372bp|location=Sequence derived from alignment at scaffold_57:7277..7648+ (Nannochloropsis oceanica)
ATGTACTGTCCTTTTCTCCTCCTTCTCCTTCGCCTCCTTCTCCTTCTCCT
CCTTTTCCTCCTTCTCCTCCTTCGCTATCTTCTCCTCCTCTTGTTCCTCC
TTCTCCTCCTCCTCTTCTTCCTCCACCCGGATCCCTCTCACTCTCTTCTC
CCCCTCCCTCTCCTGCCCCCTCGAACGACCCACACCTGTCCTCGTTCTAC
CTCCCGAGACCAAACGGAGAAAAGGCAGCAGCATGACCACAGCAGTCACT
ACTGGTGCCAGCGCCTCTTCCTTCCTCCAACCCTCCCTCCCTCCCTCTTC
CTCCTTCGCCTCCTCCTCCTCCTCCCCCTCGTCGGAAATGGAATGGGCGC
CGCTGGTGGATTTTTTCACTGA
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Synonyms
Publications