jgi.p|Nanoce1779_2|611505, mRNA_10437 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611505
Unique Name	mRNA_10437
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1271
Alignment location	scaffold_57:6031..7301 +

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Properties


Property Name	Value
TranscriptId	611591
Track	FilteredModels2
ProteinId	611505

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_57	supercontig	scaffold_57:6031..7301 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611505	gene_10437	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611505	mRNA_10437-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10437	CDS_10437	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_57:6031..7301+
coding sequence from alignment at scaffold_57:6031..7301+

mRNA sequence

>mRNA_10437 ID=mRNA_10437|Name=jgi.p|Nanoce1779_2|611505|organism=Nannochloropsis oceanica|type=mRNA|length=1271bp
AGTGGCTGAATACTGACGCATGCGTGTTGTAAAACAAGAAGAGAGGGGGA
GAAAGGAGAAAAAAGGCATGAAGAGGGGAGGGAGGGAGGAAGGGGAGGAT
GGGAGGATGGGAGGGAGAGGTGAGGTGGGAGCATGCAGTCTTGAGAAGGG
GGGCCAGACGAGGAGGCAAGTATCTGTCATTTTTTCCTGTCCTTTTTGTC
CCTCTCTCTCTTCATTTTCAGTCTTTGTCCTTCATCCCCTTCTTGCTTGG
TTTTGGCCTGTACATTTGTTGTATTGTCGAGATCAGGGCGCCTCCCCCTT
TTGATTATTCGTTTAAATGAGTAATGGGGGAGGAAAAGGAGGGGAGAAAG
GCGCACGGTGTTTCGTCGCCCAGCCTTGTCGAAGGAGGAGACAGAGCAGG
GAGAGAGGGAGGAGGAGGAGGGTGCGGGAGGGAGGGATGGAGGCAAGGGT
GAAGAGGGCGGGGAGGTAGCGTTCTGCTGTTTCCATGGCTCTCGTCCCTT
CCACAGCTTGTCCGTTCCGAGGACTCTCGTTTCTCTGTCAGGTCACGGTT
TGTTCTCTCTCACTTCTTAATCCTCCTTGTCACCATCTTTCGTCGTCCAT
GTCCTCTCTTCTGGTACTCCTTTACGGGTTTTTTTCCTCTTCTTTTACTC
CATCTTCATTTTTTCACGTGTGTGCGTGTGCGAATGATTATTTCATCCCA
CACCCCAAAGGAATGCCCTTCTCGTTTATCTCCTTTTACCTTCTTTCGTA
TTTTTTAATTTGTGAATTTCCTCCTTTTTTCCAGTAAAATCTTTACGATT
TTATTGCTCATGGAGAAGAGGAGAAATGAGTAAATCGTATTTATTCATTT
ATTTATATCTATAAATACTCGTAATGTCGAACGAATCCCAAAAATAAATT
GACTGAGCGGAATTTCTTAATTAATATATGCATGTGTTCATTTTAGTGAG
AAATAAAAGAATAGGATAATTGTAGTAGTGGTGAACATTCTCAATTCTTC
CCTTCCTCTCCTCAGACACGCTGACACTCACCCGCCCTTCCAACCCTCCC
TCATCTCCTCCCTCCCTCCCCATCCATCCACGAGGCAAAAGAAACGGATG
ATTCAATTACGTCGAGCATCAGCAAAGGTCCTGAGTAGAGGGGTAGGTAG
AAGAGAGGGAGGAAATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAG
CAGCAGCAGCAGTAGTAGCAAGACCGATCACGGCAAGGAAACGGCCATGT
ACTGTCCTTTTCTCCTCCTTC

protein sequence of jgi.p|Nanoce1779_2|611505

>mRNA_10437-protein ID=mRNA_10437-protein|Name=jgi.p|Nanoce1779_2|611505|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MALVPSTACPFRGLSFLCQVTVCSLSLLNPPCHHLSSSMSSLLVLLYGFF
SSSFTPSSFFHVCACANDYFIPHPKGMPFSFISFYLLSYFLICEFPPFFQ
*

mRNA from alignment at scaffold_57:6031..7301+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10437 ID=mRNA_10437|Name=jgi.p|Nanoce1779_2|611505|organism=Nannochloropsis oceanica|type=mRNA|length=1271bp|location=Sequence derived from alignment at scaffold_57:6031..7301+ (Nannochloropsis oceanica)
AGTGGCTGAATACTGACGCATGCGTGTTGTAAAACAAGAAGAGAGGGGGA
GAAAGGAGAAAAAAGGCATGAAGAGGGGAGGGAGGGAGGAAGGGGAGGAT
GGGAGGATGGGAGGGAGAGGTGAGGTGGGAGCATGCAGTCTTGAGAAGGG
GGGCCAGACGAGGAGGCAAGTATCTGTCATTTTTTCCTGTCCTTTTTGTC
CCTCTCTCTCTTCATTTTCAGTCTTTGTCCTTCATCCCCTTCTTGCTTGG
TTTTGGCCTGTACATTTGTTGTATTGTCGAGATCAGGGCGCCTCCCCCTT
TTGATTATTCGTTTAAATGAGTAATGGGGGAGGAAAAGGAGGGGAGAAAG
GCGCACGGTGTTTCGTCGCCCAGCCTTGTCGAAGGAGGAGACAGAGCAGG
GAGAGAGGGAGGAGGAGGAGGGTGCGGGAGGGAGGGATGGAGGCAAGGGT
GAAGAGGGCGGGGAGGTAGCGTTCTGCTGTTTCCATGGCTCTCGTCCCTT
CCACAGCTTGTCCGTTCCGAGGACTCTCGTTTCTCTGTCAGGTCACGGTT
TGTTCTCTCTCACTTCTTAATCCTCCTTGTCACCATCTTTCGTCGTCCAT
GTCCTCTCTTCTGGTACTCCTTTACGGGTTTTTTTCCTCTTCTTTTACTC
CATCTTCATTTTTTCACGTGTGTGCGTGTGCGAATGATTATTTCATCCCA
CACCCCAAAGGAATGCCCTTCTCGTTTATCTCCTTTTACCTTCTTTCGTA
TTTTTTAATTTGTGAATTTCCTCCTTTTTTCCAGTAAAATCTTTACGATT
TTATTGCTCATGGAGAAGAGGAGAAATGAGTAAATCGTATTTATTCATTT
ATTTATATCTATAAATACTCGTAATGTCGAACGAATCCCAAAAATAAATT
GACTGAGCGGAATTTCTTAATTAATATATGCATGTGTTCATTTTAGTGAG
AAATAAAAGAATAGGATAATTGTAGTAGTGGTGAACATTCTCAATTCTTC
CCTTCCTCTCCTCAGACACGCTGACACTCACCCGCCCTTCCAACCCTCCC
TCATCTCCTCCCTCCCTCCCCATCCATCCACGAGGCAAAAGAAACGGATG
ATTCAATTACGTCGAGCATCAGCAAAGGTCCTGAGTAGAGGGGTAGGTAG
AAGAGAGGGAGGAAATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAG
CAGCAGCAGCAGTAGTAGCAAGACCGATCACGGCAAGGAAACGGCCATGT
ACTGTCCTTTTCTCCTCCTTC

Coding sequence (CDS) from alignment at scaffold_57:6031..7301+

>mRNA_10437 ID=mRNA_10437|Name=jgi.p|Nanoce1779_2|611505|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_57:6031..7301+ (Nannochloropsis oceanica)
ATGGCTCTCGTCCCTTCCACAGCTTGTCCGTTCCGAGGACTCTCGTTTCT
CTGTCAGGTCACGGTTTGTTCTCTCTCACTTCTTAATCCTCCTTGTCACC
ATCTTTCGTCGTCCATGTCCTCTCTTCTGGTACTCCTTTACGGGTTTTTT
TCCTCTTCTTTTACTCCATCTTCATTTTTTCACGTGTGTGCGTGTGCGAA
TGATTATTTCATCCCACACCCCAAAGGAATGCCCTTCTCGTTTATCTCCT
TTTACCTTCTTTCGTATTTTTTAATTTGTGAATTTCCTCCTTTTTTCCAG
TAA

Synonyms

Publications