jgi.p|Nanoce1779_2|149317, mRNA_1043 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|149317
Unique NamemRNA_1043
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length941
Alignment locationscaffold_2:1082802..1083742 -

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Properties
Property NameValue
TranscriptId149403
TrackFilteredModels2
ProteinId149317
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1082802..1083742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|149317gene_1043Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|149317mRNA_1043-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1043CDS_1043Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1043 ID=mRNA_1043|Name=jgi.p|Nanoce1779_2|149317|organism=Nannochloropsis oceanica|type=mRNA|length=941bp
CTGTGTAGTTGCTCTATTTGAGCTTGGTCTGACCCAGAAAAAAACTGCTG
CTAAAGCTGGTTGATGTTTTTGTTTCTGCTGCCGGTGTATTTTGGATGGG
GGCCAAGCCAAGAGACATGCCAGGTAAGAGAGGAAAACGAGAAGGGCCAA
CTAACAAAGACGAGGAGGAAATACGGAGGGTGGCTACTTCTACCTTTTAC
CTCTTTTCTACCTTCTATTCTAACCTCCTTTTTAACATCTCTCTCCATCC
CTACCTTTTCCCCGCCCACCCCCATTCTCACACTTACCAGTGTATGGCTA
CGCTCGTTAGTATGACAAAGCGTTTTTTGGGCTTGTCGAACGACTTTTTG
GGGTTCATTTTTTGCAAAGTGCCCGTCTTCAAGACACCAAACGTGTGCCC
TTTTTTCGACTTTTTCGACGCTGATGAATTCGGGGTGCGGGTGCCCAGCG
AGCAACTGACCGGCGACACTGTCGTCCCTGCTGCGGACGCGGAAAATATG
GGGGATTGGTGCTTATCGACGGGGGTGGAGGCAGCCATTACAGCGCTGAC
AGTGGTCATCTCCGTGCCGAGCACAGTCGGGGAAAGGAGCGGGGATGAGA
AAATGGAAGATCCGTGCAGGCAGGAAACGGGCCTCGACGAATGCAGAAGT
AAGTATTCCTGTGCCCAAAAATGTACAGAGGAAGGAGCGAACTGGGATGG
GTCATTAGGTAGGCCTTCGTGAGCACGGGTAGCTAGGAGGAGGGTCAATA
GCAAAGGGGCAAAGGGGCGATGGGCCAGATATAGCTTAAACTCAATGCCA
AGATTCCCGCATGGGCGACTTACTCAGCTCAAAGGAGGGACAGATGTGGA
CGTAATAGTATGATTTGTGACTATCTTCTGTGGGGCTTGGTGCGTCGCTC
GTCAGATCACTCACTCCTATACATGCCTCGAGGCTTAACTT
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protein sequence of jgi.p|Nanoce1779_2|149317

>mRNA_1043-protein ID=mRNA_1043-protein|Name=jgi.p|Nanoce1779_2|149317|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MGAKPRDMPGKRGKREGPTNKDEEEIRRVATSTFYLFSTFYSNLLFNISL
HPYLFPAHPHSHTYQCMATLVSMTKRFLGLSNDFLGFIFCKVPVFKTPNV
CPFFDFFDADEFGVRVPSEQLTGDTVVPAADAENMGDWCLSTGVEAAITA
LTVVISVPSTVGERSGDEKMEDPCRQETGLDECRSKYSCAQKCTEEGANW
DGSLGRPS*
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mRNA from alignment at scaffold_2:1082802..1083742-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1043 ID=mRNA_1043|Name=jgi.p|Nanoce1779_2|149317|organism=Nannochloropsis oceanica|type=mRNA|length=941bp|location=Sequence derived from alignment at scaffold_2:1082802..1083742- (Nannochloropsis oceanica)
CTGTGTAGTTGCTCTATTTGAGCTTGGTCTGACCCAGAAAAAAACTGCTG
CTAAAGCTGGTTGATGTTTTTGTTTCTGCTGCCGGTGTATTTTGGATGGG
GGCCAAGCCAAGAGACATGCCAGGTAAGAGAGGAAAACGAGAAGGGCCAA
CTAACAAAGACGAGGAGGAAATACGGAGGGTGGCTACTTCTACCTTTTAC
CTCTTTTCTACCTTCTATTCTAACCTCCTTTTTAACATCTCTCTCCATCC
CTACCTTTTCCCCGCCCACCCCCATTCTCACACTTACCAGTGTATGGCTA
CGCTCGTTAGTATGACAAAGCGTTTTTTGGGCTTGTCGAACGACTTTTTG
GGGTTCATTTTTTGCAAAGTGCCCGTCTTCAAGACACCAAACGTGTGCCC
TTTTTTCGACTTTTTCGACGCTGATGAATTCGGGGTGCGGGTGCCCAGCG
AGCAACTGACCGGCGACACTGTCGTCCCTGCTGCGGACGCGGAAAATATG
GGGGATTGGTGCTTATCGACGGGGGTGGAGGCAGCCATTACAGCGCTGAC
AGTGGTCATCTCCGTGCCGAGCACAGTCGGGGAAAGGAGCGGGGATGAGA
AAATGGAAGATCCGTGCAGGCAGGAAACGGGCCTCGACGAATGCAGAAGT
AAGTATTCCTGTGCCCAAAAATGTACAGAGGAAGGAGCGAACTGGGATGG
GTCATTAGGTAGGCCTTCGTGAGCACGGGTAGCTAGGAGGAGGGTCAATA
GCAAAGGGGCAAAGGGGCGATGGGCCAGATATAGCTTAAACTCAATGCCA
AGATTCCCGCATGGGCGACTTACTCAGCTCAAAGGAGGGACAGATGTGGA
CGTAATAGTATGATTTGTGACTATCTTCTGTGGGGCTTGGTGCGTCGCTC
GTCAGATCACTCACTCCTATACATGCCTCGAGGCTTAACTT
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Coding sequence (CDS) from alignment at scaffold_2:1082802..1083742-

>mRNA_1043 ID=mRNA_1043|Name=jgi.p|Nanoce1779_2|149317|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_2:1082802..1083742- (Nannochloropsis oceanica)
ATGGGGGCCAAGCCAAGAGACATGCCAGGTAAGAGAGGAAAACGAGAAGG
GCCAACTAACAAAGACGAGGAGGAAATACGGAGGGTGGCTACTTCTACCT
TTTACCTCTTTTCTACCTTCTATTCTAACCTCCTTTTTAACATCTCTCTC
CATCCCTACCTTTTCCCCGCCCACCCCCATTCTCACACTTACCAGTGTAT
GGCTACGCTCGTTAGTATGACAAAGCGTTTTTTGGGCTTGTCGAACGACT
TTTTGGGGTTCATTTTTTGCAAAGTGCCCGTCTTCAAGACACCAAACGTG
TGCCCTTTTTTCGACTTTTTCGACGCTGATGAATTCGGGGTGCGGGTGCC
CAGCGAGCAACTGACCGGCGACACTGTCGTCCCTGCTGCGGACGCGGAAA
ATATGGGGGATTGGTGCTTATCGACGGGGGTGGAGGCAGCCATTACAGCG
CTGACAGTGGTCATCTCCGTGCCGAGCACAGTCGGGGAAAGGAGCGGGGA
TGAGAAAATGGAAGATCCGTGCAGGCAGGAAACGGGCCTCGACGAATGCA
GAAGTAAGTATTCCTGTGCCCAAAAATGTACAGAGGAAGGAGCGAACTGG
GATGGGTCATTAGGTAGGCCTTCGTGA
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Synonyms
Publications