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Properties
| Property Name | Value |
|---|
| TranscriptId | 575195 |
| Track | FilteredModels2 |
| ProteinId | 575109 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:1078584..1082695 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1042 ID=mRNA_1042|Name=jgi.p|Nanoce1779_2|575109|organism=Nannochloropsis oceanica|type=mRNA|length=3346bp
AGGCTACACAAGAGCCAGACGGTAACTCTTCATCGCCCGTCAAGACTAAG
CGACATTTCAGCTTTGCGCCAAGCAAGGCAGCATCCACATCGTGAATCGA
CACGGCAAAACGATGGCGGAGCCCGTCAAACCCACGTCCATGTCCCTGCA
CGCTTTGCTTGTCTCCATCGAACCGCTGGACGTGGCCACCAAGACTTTTG
TGTCCTTTCTACTCGTTTCCATTGTCTTTTTTGCCCTCTTTGTCATCGCG
CCAACGAATAGCAAGAAAACCGTGAAGCTTCAAGCGTCTTGGGCTTTGAA
GGCGGTGTCGGTCGTTCATGCCGTGGTGGTCGCAGGTGCCAGCGTCTGGT
CATTGCTTTGTGAGCCGGGGATACATGAGATTACAACTGGTGTATTTCAA
TTGAATGCCGATGCGGTACGCGGACCTTTGATTCATGCACGCAGCGACGT
GCTCGCCGCAGCGGCGCCTCTTACCCTAGCTTACTTTTTATTTGACCTGT
TACTGGTGCCCGTATGGGAAGGACGATTGGCGCAACATATCCCCGTCTTC
CTTCACCACGGTTTATCTCTCCTCACCTGGCCCGTCGGCCTCTGTCATCC
CGCCTGCCATTTCTTCCTCCTCTGCTGCCTGAGCATGGAGTTTTCTACGC
CCTTCGTACAGTACCGATGGTTCATCATCCAGAGCGACCGCCACGGCAAA
GACCATCCGCTTTACCTCGTTAACGGGCTGATAATGACTCTGGCCTTCGG
CGCTTGTCGGCTGTACCCGATGCTCCCTCACAACCTGTGGGCCATCAGTG
TCTCGACCCCGCACTCGGCTGATTCGGGTTTGCCGCTGCTGGTGCGCGTG
GCAAGCAGAGCGTTGGTGTTACCCAATGTCTTAAACTTGTATTGGGGGTA
CTTGATGTTCAAGGGATTAGCCGCTGTGATTTTTGGCTCGAAGAAAGGAG
GAACCCAGAAGTCAGTAGCTGCAGCAGCAGCAACGGCAGCGGAAACAAAA
ACGACAGACACAGTGGGAGAGATGAAGAAAAGGAGGAAAGGGGGCGTGGA
ATTTGCGGCTACACCTTCATATGTTTCTAATTCATCGTCGCCACTGTCAA
TACCATCACAAAGAGCAGTGGCAGCTGCAGCGGAGGCAGCATCACCATCT
CTCGCCAATAGACGAGTGACGCGAAGTAGCAGCAAGGGGTTGAAAGCAGC
TTGAAGAAATCACATGATTGAAGATTCATAACGGTATTTGTGCGAGTAAG
AGGGATTGGAAAAGAAGGAGGAGCAGGAGGAGCAGGAGTGAACGGTGAAA
TGTAGAATGACGAATGTGACAAATTATGCGTGAAAAAGAATGTTGGGAGA
TAGAGAAACCACACTTAAATAAAATTTCGATTTGGAATATTTATATTATG
GCGACGCCATCAGAAACCCCTATTGCTAATGACCAAAATTCCAATCCTAC
TCCTTTTATAGGCGAGTTCTTCTGCTGCTGACCGCAGAGACCACTTGCTC
CGCTATTTGACATCATGCACTCGGACCCAGGAAAGGTTGTTCGCTAGTCT
ATGGTGATGGGAGAACGTTGTCCAAACAACTCCATCCAAGCGCCTTTCGC
TATGTTTTTGGTGGCTGAATGCCATAAATGAAGAGGAAATGAGTATGATG
TAGCAGAAGAGGAGGAGGTCTCGAAGCGGCACACCAAACCAAGGCGGCCA
TAAGTAAGGCGGCCTTAGCATGGATGCCTATGGTGGTGGGTTGCTATGCG
ACAGAAAATGCCATCAAATATAGTCTCCGAATCTCCAAGCCCTCCAACAA
CTTAAAATAACACTGATTTGTTAATATATATACAAAGACTCTTTCGTACC
CTCCGCCAGCCTGACTCGGAGGGATGGGGAGGTTAAGTCGGAAGATGTGG
ATTGCGGTCACATATGCAAACAAAACATTCAGCATTCAATCCTTCCAACG
TAAACCGTCAACACAGGAGACGATCAGCGAGTGAGACTGCCTTGATGCAT
GCGGCCATCCACTAGGCGCCCTCCCTCTCCTCTATTCTCCTCGCTTCTCC
TTTATCTCTTCACTACCACGCTGATAATGCTGCCCCGACGGGCAACGGCT
ACTCTATCTTTCCCCGGCACGACACGGAGAGTTTCCGGTTCGGCTACCTT
CCTCTTTCCTTCCTCTTCTGCCTTCTCCTCCACCTCCCTCCACATCTCGC
CCCGCATTAGCAGCAAACAGCGTCCTCCAGCCCTCTTATCCCGATCCTTC
TCAGAAGACAATGAGCCCAGCACACCAGCCCTCGACCCCACTTTTGCAAG
TGAATATCATGCCCCAGTCATGTGGCGAGAGGTTCTTGATCATTTTATCA
CAGACCCACAAGGCCTTTACTTGGATTGTACGTTGGGTGGAGGAGGGCAT
TCGGAAGCAATTCTCACTCGATTGAAGCAGCCTGGTGGGAAGCTGATTGC
CTTAGATCAAGATCCTGATGCTTTGGCTTTCGCGGGGAAACGTCTGAAAA
GTCAGGAAGAAGAGGGGAGATTTCGGGCGGTCAGGGCGAATTTCCGTGTG
GCGAGTGAAGTACTGGTAGCGGAGGGGTTGATGACGCCAGAGGCCGCCGA
AGGGAGGGAACCAGGGCCATTTGCGGGTATGCTTCTGGATTTGGGCGTTT
CCTCGCATCAGCTTGATGAAGCTTCGAGGGGGTTTAGCTTCAGGGGTGAT
GGACCACTGGACATGCGCATGGAGGGCCCCAACATCCACTCCTCCTCCTC
CTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCCTCTCAGCCGACGAAATTG
TGAACACTTGGGAAGTAGGAGCAATATCGAAAGTACTCAAAGAGTACGGA
GAGGAGCCGCGTGCCTATAAATTGGCGCGGGCGATAGTGTCCGCCCGTCC
ACTCACTTCCACGGGACAGTTGAAGGAGGTGATTGAACGACACACGCCTT
ATACAGAGAGGCCTAAAGTCCTGGCACGTGTTTTTCAAGGCCTCCGCATC
GCAGTAAACGGCGAGATGGATGCTCTTGACTCCATCCTCTTCCAATCCAC
GCGCCTTGTACGACCAGGAGGGAGGCTTGTCGTCCTCTCTTACCATTCGC
TCGAGGACCGCCCCGTAAAAAGATTTTTAAGGGCCGGGAATAAAGACGGG
GTCGTCGAACGTGATTTTTATGGACACGCCCTCAGCACATGGAAAGTACT
CACACGCTCCTCCATGAGGCCGCAAGAAGATGAAGTTGAGCTCAATCCAA
GGGCGAGAAGCGTGAGTATGAGGGTGGGGGAAAGGACGGAGTTGATGGAG
GACGAGGTACGGTCGAGGGTGGAAGCCCCGCCGGCTGGGAAGGGAA back to topprotein sequence of jgi.p|Nanoce1779_2|575109 >mRNA_1042-protein ID=mRNA_1042-protein|Name=jgi.p|Nanoce1779_2|575109|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MAEPVKPTSMSLHALLVSIEPLDVATKTFVSFLLVSIVFFALFVIAPTNS
KKTVKLQASWALKAVSVVHAVVVAGASVWSLLCEPGIHEITTGVFQLNAD
AVRGPLIHARSDVLAAAAPLTLAYFLFDLLLVPVWEGRLAQHIPVFLHHG
LSLLTWPVGLCHPACHFFLLCCLSMEFSTPFVQYRWFIIQSDRHGKDHPL
YLVNGLIMTLAFGACRLYPMLPHNLWAISVSTPHSADSGLPLLVRVASRA
LVLPNVLNLYWGYLMFKGLAAVIFGSKKGGTQKSVAAAAATAAETKTTDT
VGEMKKRRKGGVEFAATPSYVSNSSSPLSIPSQRAVAAAAEAASPSLANR
RVTRSSSKGLKAA* back to topmRNA from alignment at scaffold_2:1078584..1082695- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1042 ID=mRNA_1042|Name=jgi.p|Nanoce1779_2|575109|organism=Nannochloropsis oceanica|type=mRNA|length=4112bp|location=Sequence derived from alignment at scaffold_2:1078584..1082695- (Nannochloropsis oceanica)
AGGCTACACAAGAGCCAGACGGTAACTCTTCATCGCCCGTCAAGACTAAG
CGACATTTCAGCTTTGCGCCAAGCAAGGCAGCATCCACATCGTGAATCGA
CACGGCAAAACGATGGCGGAGCCCGTCAAACCCACGTCCATGTCCCTGCA
CGCTTTGCTTGTCTCCATCGAACCGCTGGACGTGGCCACCAAGACTTTTG
TGTCCTTTCTACTCGTTTCCATTGTCTTTTTTGCCCTCTTTGTCATCGCG
CCAACGAATAGCAAGAAAACCGTGAAGCTTCAAGCGTCTTGGGCTTTGAA
GGCGGTGTCGGTCGTTCATGCCGTGGTGGTCGCAGGTGCCAGCGTCTGGT
CATTGCTTTGTGAGCCGGGGATACATGAGATTACAACTGGTGTATTTCAA
TTGAATGCCGATGCGGTACGCGGACCTTTGATTCATGCACGCAGCGACGT
GCTCGCCGCAGCGGCGCCTCTTACCCTAGCTTACTTTTTATTTGACCTGT
TACTGGTGCCCGTATGGGAAGGACGATTGGCGGTAAGTGCTAACATTGGA
AAGTGGGGCTGAAGAAGGATCGACCTGGGTTCGATGAGGGAGAACGCCTT
CGGGGGGAGCATCGTATGTGTGGAAAGACAACGAGCGCATTGCCTCGAAT
CTACCTGCATCTCACCGATAACGAGTGCGGAATCGATCATAAAATTCCCA
TTTTCCTCCCTTTTCTTCCCGCTTAATCACCATAGCAACATATCCCCGTC
TTCCTTCACCACGGTTTATCTCTCCTCACCTGGCCCGTCGGCCTCTGTCA
TCCCGCCTGCCATTTCTTCCTCCTCTGCTGCCTGAGCATGGAGTTTTCTA
CGCCCTTCGTACAGTACCGATGGTTCATCATCCAGAGCGACCGCCACGGC
AAAGACCATCCGCTTTACCTCGTTAACGGGCTGATAATGACTCTGGCCTT
CGGCGCTTGTCGGCTGTACCCGATGCTCCCTCACAACCTGTGGGCCATCA
GTGTCTCGACCCCGCACTCGGCTGATTCGGGTTTGCCGCTGCTGGTGCGC
GTGGCAAGCAGAGCGTTGGTGTTACCCAATGTCTTAAACTTGTATTGGGG
GTACTTGATGTTCAAGGGATTAGCCGCTGTGATTTTTGGCTCGAAGAAAG
GAGGAACCCAGAAGTCAGTAGCTGCAGCAGCAGCAACGGCAGCGGAAACA
AAAACGACAGACACAGTGGGAGAGATGAAGAAAAGGAGGAAAGGGGGCGT
GGAATTTGCGGCTACACCTTCATATGTTTCTAATTCATCGTCGCCACTGT
CAATACCATCACAAAGAGCAGTGGCAGCTGCAGCGGAGGCAGCATCACCA
TCTCTCGCCAATAGACGAGTGACGCGAAGTAGCAGCAAGGGGTTGAAAGC
AGCTTGAAGAAATCACATGATTGAAGATTCATAACGGTATTTGTGCGAGT
AAGAGGGATTGGAAAAGAAGGAGGAGCAGGAGGAGCAGGAGTGAACGGTG
AAATGTAGAATGACGAATGTGACAAATTATGCGTGAAAAAGAATGTTGGG
AGATAGAGAAACCACACTTAAATAAAATTTCGATTTGGAATATTTATATT
ATGGCGACGCCATCAGAAACCCCTATTGCTAATGACCAAAATTCCAATCC
TACTCCTTTTATAGGCGAGTTCTTCTGCTGCTGACCGCAGAGACCACTTG
CTCCGCTATTTGACATCATGCACTCGGACCCAGGAAAGGTTGTTCGCTAG
TCTATGGTGATGGGAGAACGTTGTCCAAACAACTCCATCCAAGCGCCTTT
CGCTATGTTTTTGGTGGCTGAATGCCATAAATGAAGAGGAAATGAGTATG
ATGTAGCAGAAGAGGAGGAGGTCTCGAAGCGGCACACCAAACCAAGGCGG
CCATAAGTAAGGCGGCCTTAGCATGGATGCCTATGGTGGTGGGTTGCTAT
GCGACAGAAAATGCCATCAAATATAGTCTCCGAATCTCCAAGCCCTCCAA
CAACTTAAAATAACACTGATTTGTTAATATATATACAAAGACTCTTTCGT
ACCCTCCGCCAGCCTGACTCGGAGGGATGGGGAGGTTAAGTCGGAAGATG
TGGATTGCGGTCACATATGCAAACAAAACATTCAGCATTCAATCCTTCCA
ACGTAAACCGTCAACACAGGAGACGATCAGCGAGTGAGACTGCCTTGATG
CATGCGGCCATCCACTAGGCGCCCTCCCTCTCCTCTATTCTCCTCGCTTC
TCCTTTATCTCTTCACTACCACGCTGATAATGCTGCCCCGACGGGCAACG
GCTACTCTATCTTTCCCCGGCACGACACGGAGAGTTTCCGGTTCGGCTAC
CTTCCTCTTTCCTTCCTCTTCTGCCTTCTCCTCCACCTCCCTCCACATCT
CGCCCCGCATTAGCAGCAAACAGCGTCCTCCAGCCCTCTTATCCCGATCC
TTCTCAGAAGACAATGAGCCCAGCACACCAGCCCTCGACCCCACTTTTGC
AAGTGAATATCATGCCCCAGTCATGTGGCGAGAGGTTCTTGATCATTTTA
TCACAGACCCACAAGGCCTTTACTTGGATTGTACGTTGGGTGGAGGAGGG
CATTCGGAAGCAATTCTCACTCGATTGAAGCAGCCTGGTGGGAAGCTGAT
TGCCTTAGATCAAGATCCTGATGCTTTGGCTTTCGCGGGGAAACGTCTGA
AAAGTCAGGAAGAAGAGGGGAGATTTCGGGCGGTCAGGGCGAATTTCCGT
GTGGCGAGTGAAGTACTGGTAGCGGAGGGGTTGATGACGCCAGAGGCCGC
CGAAGGGAGGGAACCAGGGCCATTTGCGGGTAGGAGGGAGGAGGGAGGGA
GGATGGAAGGGGGAGGGATGTAAGGAGGGGGATAAATAAATGTTTTGAAA
AACACTTAGTGCACTCATGTCAACATTCATTTTTGATAGGTATGCTTCTG
GATTTGGGCGTTTCCTCGCATCAGCTTGATGAAGCTTCGAGGGTACGTTA
TGGAAAAGTGGGATTATCGTGGTTATTGTTATAGATGCTTACAACCTACC
CCGTCCCTCCTATCTTGCTTTCTTTCCTTCCTCCCTTCCGTGGGGGCTGA
TAATCTACAGGGGTTTAGCTTCAGGGGTGATGGACCACTGGACATGCGCA
TGGAGGTGAGCATCATGGAAGTGAAGTCTTACTTTAACAAGCGTTCTACC
ACTCTATTCCGGATGTTTGGTTGTGTACTTATCTTCATATGTTCATGCGA
GGATACTTGTCTATCAATCTTTTTTCTTATGGCATTTATATCCTTTCTAG
GTTTCCCTGTGAATCCCTTGCCCTGCTGTCTCATTCCTAGCCCGTCTTAT
ATGTATCTTCTCCCTCCACCACATTCTCCTCTCCTTCCCCCAGGGCCCCA
ACATCCACTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCC
CTCTCAGCCGACGAAATTGTGAACACTTGGGAAGTAGGAGCAATATCGAA
AGTACTCAAAGAGTACGGAGAGGAGCCGCGTGCCTATAAATTGGCGCGGG
CGATAGTGTCCGCCCGTCCACTCACTTCCACGGGACAGTTGAAGGAGGTG
ATTGAACGACACACGCCTTATACAGGTAATCGCAAATCCGCTGACCAATA
CACTTTAAATATGATAGGTATGAGATAATCAGCCGATAAAATTCCTTCAC
TCTCCTCACAATGGACATACAGAGAGGCCTAAAGTCCTGGCACGTGTTTT
TCAAGGCCTCCGCATCGCAGTAAACGGCGAGATGGATGCTCTTGACTCCA
TCCTCTTCCAATCCACGCGCCTTGTACGACCAGGAGGGAGGCTTGTCGTC
CTCTCTTACCATTCGCTCGAGGACCGCCCCGTAAAAAGATTTTTAAGGGC
CGGGAATAAAGACGGGGTCGTCGAACGTGATTTTTATGGACACGCCCTCA
GCACATGGAAAGTACTCACACGCTCCTCCATGAGGCCGCAAGAAGATGAA
GTTGAGCTCAATCCAAGGGCGAGAAGCGTGAGTATGAGGGTGGGGGAAAG
GACGGAGTTGATGGAGGACGAGGTACGGTCGAGGGTGGAAGCCCCGCCGG
CTGGGAAGGGAA back to topCoding sequence (CDS) from alignment at scaffold_2:1078584..1082695- >mRNA_1042 ID=mRNA_1042|Name=jgi.p|Nanoce1779_2|575109|organism=Nannochloropsis oceanica|type=CDS|length=2184bp|location=Sequence derived from alignment at scaffold_2:1078584..1082695- (Nannochloropsis oceanica)
CAACATATCCCCGTCTTCCTTCACCACGGTTTATCTCTCCTCACCTGGCC
CGTCGGCCTCTGTCATCCCGCCTGCCATTTCTTCCTCCTCTGCTGCCTGA
GCATGGAGTTTTCTACGCCCTTCGTACAGTACCGATGGTTCATCATCCAG
AGCGACCGCCACGGCAAAGACCATCCGCTTTACCTCGTTAACGGGCTGAT
AATGACTCTGGCCTTCGGCGCTTGTCGGCTGTACCCGATGCTCCCTCACA
ACCTGTGGGCCATCAGTGTCTCGACCCCGCACTCGGCTGATTCGGGTTTG
CCGCTGCTGGTGCGCGTGGCAAGCAGAGCGTTGGTGTTACCCAATGTCTT
AAACTTGTATTGGGGGTACTTGATGTTCAAGGGATTAGCCGCTGTGATTT
TTGGCTCGAAGAAAGGAGGAACCCAGAAGTCAGTAGCTGCAGCAGCAGCA
ACGGCAGCGGAAACAAAAACGACAGACACAGTGGGAGAGATGAAGAAAAG
GAGGAAAGGGGGCGTGGAATTTGCGGCTACACCTTCATATGTTTCTAATT
CATCGTCGCCACTGTCAATACCATCACAAAGAGCAGTGGCAGCTGCAGCG
GAGGCAGCATCACCATCTCTCGCCAATAGACGAGTGACGCGAAGTAGCAG
CAAGGGGTTGAAAGCAGCTTGAATGGCGGAGCCCGTCAAACCCACGTCCA
TGTCCCTGCACGCTTTGCTTGTCTCCATCGAACCGCTGGACGTGGCCACC
AAGACTTTTGTGTCCTTTCTACTCGTTTCCATTGTCTTTTTTGCCCTCTT
TGTCATCGCGCCAACGAATAGCAAGAAAACCGTGAAGCTTCAAGCGTCTT
GGGCTTTGAAGGCGGTGTCGGTCGTTCATGCCGTGGTGGTCGCAGGTGCC
AGCGTCTGGTCATTGCTTTGTGAGCCGGGGATACATGAGATTACAACTGG
TGTATTTCAATTGAATGCCGATGCGGTACGCGGACCTTTGATTCATGCAC
GCAGCGACGTGCTCGCCGCAGCGGCGCCTCTTACCCTAGCTTACTTTTTA
TTTGACCTGTTACTGGTGCCCGTATGGGAAGGACGATTGGCGCAACATAT
CCCCGTCTTCCTTCACCACGGTTTATCTCTCCTCACCTGGCCCGTCGGCC
TCTGTCATCCCGCCTGCCATTTCTTCCTCCTCTGCTGCCTGAGCATGGAG
TTTTCTACGCCCTTCGTACAGTACCGATGGTTCATCATCCAGAGCGACCG
CCACGGCAAAGACCATCCGCTTTACCTCGTTAACGGGCTGATAATGACTC
TGGCCTTCGGCGCTTGTCGGCTGTACCCGATGCTCCCTCACAACCTGTGG
GCCATCAGTGTCTCGACCCCGCACTCGGCTGATTCGGGTTTGCCGCTGCT
GGTGCGCGTGGCAAGCAGAGCGTTGGTGTTACCCAATGTCTTAAACTTGT
ATTGGGGGTACTTGATGTTCAAGGGATTAGCCGCTGTGATTTTTGGCTCG
AAGAAAGGAGGAACCCAGAAGTCAGTAGCTGCAGCAGCAGCAACGGCAGC
GGAAACAAAAACGACAGACACAGTGGGAGAGATGAAGAAAAGGAGGAAAG
GGGGCGTGGAATTTGCGGCTACACCTTCATATGTTTCTAATTCATCGTCG
CCACTGTCAATACCATCACAAAGAGCAGTGGCAGCTGCAGCGGAGGCAGC
ATCACCATCTCTCGCCAATAGACGAGTGACGCGAAGTAGCAGCAAGGGGT
TGAAAGCAGCTTGAATGGCGGAGCCCGTCAAACCCACGTCCATGTCCCTG
CACGCTTTGCTTGTCTCCATCGAACCGCTGGACGTGGCCACCAAGACTTT
TGTGTCCTTTCTACTCGTTTCCATTGTCTTTTTTGCCCTCTTTGTCATCG
CGCCAACGAATAGCAAGAAAACCGTGAAGCTTCAAGCGTCTTGGGCTTTG
AAGGCGGTGTCGGTCGTTCATGCCGTGGTGGTCGCAGGTGCCAGCGTCTG
GTCATTGCTTTGTGAGCCGGGGATACATGAGATTACAACTGGTGTATTTC
AATTGAATGCCGATGCGGTACGCGGACCTTTGATTCATGCACGCAGCGAC
GTGCTCGCCGCAGCGGCGCCTCTTACCCTAGCTTACTTTTTATTTGACCT
GTTACTGGTGCCCGTATGGGAAGGACGATTGGCG back to top
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