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Properties
| Property Name | Value |
|---|
| TranscriptId | 575179 |
| Track | FilteredModels2 |
| ProteinId | 575093 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:1075173..1077764 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1040 ID=mRNA_1040|Name=jgi.p|Nanoce1779_2|575093|organism=Nannochloropsis oceanica|type=mRNA|length=2448bp
AGAATGAGCCGATCTGCCTGCTCCAGCTGAGGACATGCGCAAGGAGCAGC
TGAGTTTCGATTGATACTTCGGGACACGCAGCGCCCGTGCCTCGTTCTAT
GGCTAGTGCAGGCAAATCACCCACTCGGGCGGACGGAAAGGAAAGATTTT
TGCAGCTTCCATCTTCCACCTCCACGCAGCAGGACGTGCCAGACAGTGGA
GGGGGCAGCAGTAGCAACATGCCTCGTTCGTACGGTCTACGGGCCCGGCG
CATGCCCTCCTACCTACAAACGTCTGGCACAGAGGACGATAATGAGGATT
CGGACTCAGACTCTTCAGTCGACGGCGGCGGCGGAAGACGAGGAGAAGGA
GAAAGGGGAGGGCGAGAGACACGATATCAGTCACGCAGTCGCGGCGGCAG
TGTGAGAAGGTATAGTTGCACAGGAGTGGGGAAAGATGATGATCGTTTGT
CGTCCCTGCCTGGGGTTATGGGTGGGGCTGCTGGTGGGGCTGCTGGTGCC
AGCGGCAGTGGTGGGCGTGGTGGTGGTGGAGGTAGAGGAGGCGGGAACGA
CAGCAGAAAGCGAAAGAGCCCTACTCCTCCACCAGGGGGAGGAGGGATGG
CAGGAGCGGATTGCTCGGTGATGGGGTGCACGAAGAAGAGTCGGGGGTCG
ACAGGACGCTGTCGAAGGCATGGGGGGGGGGTGACTTGTGTTGTGCCTGG
TTGCACGGGCTTTTCCAGGTTGGAGGGGAAATGCTCCGTGCACGGAGGAG
CGCAGATGTGCTTAGTGCATGGGTGTGATCGACGGGCGAGGTTCTATGGA
CGCTGTACGCGGCATGGGGGGTTTGTAAATTGTCAGATGGACCGCTGCAC
TTTGCGGGCGGTGAGTAAGGGGAGGTGTGCCAAGCACGGGGGCAAAGACC
CATGTCGGCATCCGGGGTGCACTCGCCCGAGGTTGAAGAGTAAGGACGAT
TGGTGCATGATCCACTCCCGAGGTTTGGGGACGTTTCTGATTCAAAGGCA
GAGGGAGCGAGGGCAGGGGCTGAGGCCTGTGCCGTGCACCTATTTTGACC
CTAGCGGCGGGTGTAGGTGTGCGGAAATGGCGACTATCGGCGTCGGGGGG
CCATTTCTGTGCCCGTATCATTTATTGTTGACTAGGTGTGGAGGGGGGGT
GGATTGCAAGGCTTCCTGTTTTCTAAAAGGGCGGTGTGTGCGGCACGCAG
GGGAGGAGGCAGTAGAAGGGGAGTGCCAGCAACCAGGGTGTTGCACGAAG
GCCGCGGTGGACGATCCGTACGGGTTTTGTGTGGAGCATAAGCAATGGAA
ACATTTTTGCCGACATTGGGGCTGTATTGCCCGTGCACTGGTGGTGGGGG
GATGGTGTCCTTTGCATCACCTGCAGTTTGCCGGGGGGCAGGAGGAAGAG
AGGGTGGTGCGAGAGGCCATGGCGGCAGCAGCGGTCAAGAAGAGGGAGGA
GGGAGGAGGGAAAGCGGTCTGTGAGGGAAGACAGCCCAAGCCGTTAAGGT
GCTCCTCGTCGTCATATTCCTCGGCCTCGCCAGGGCCAGGAGCGCGGGAA
GGAGAGGCAAGGAAGGAGGGAGCGGAGACGAAAGTTGTTGATTATTGGAG
GAGAGCTGATTCGATGAATTCGACGGGCTGTCGACAAGGTGAGGCGGCGT
TTTTAAGTGTGGGGGAAGGGACAGGAGAAATGTACGGGAGGGAGGGAGTG
ATAGGGAGGGTTGACGTCCCAGAGGGAATGGACTTGACGTCCTCCGCTCT
TTATTTTGGAGGGGCGCCAATTGACATGCCGCCTGCAACTGGGCCCTCGC
CCGTGTCATCCCTCCCCTCCTTTCCGTTGACCTCGACGTTATATACGTCT
TTCATAACGGGCTCGGTGGATTGCGCGTCGGATTTGGAGGCCTTGTCCTA
CTGGCATCCGGTTGTGAGAGAGATGGTAGGGTGGCGTAGAAATGAGGGGG
TGGGGAGGGTGTTGGCGATAGAGGATAAGGAGAAGGAGAAAGAGTGGGAG
TGAGGGAGAGCAGAGAAGAAGAAGGGTGAGTGCGAGTAGGGAAAGGAGGT
GTGAATTGATGTAAGCTGTTGTGTTGTAGCACCTTTCTGTAATTATTTGT
GACGTTGGCAAGTCGAAAGAGTGAGCTACAGGAAGAACGGGAGGGAGAAG
ATGACCTGGGGAAGCTTGGAAAGACCCAGAGGCCGAGCAAGATACAAGCA
GCCTTGTGGTTGGGAAAATGTTGTCTATCGTGTGGCACGTGGGCGGAAGA
TATGGATGACTTATGCTCTTTGTCTCTACTTTTCTTGCTGTCAGCGGTAG
TGCTCCACAGTATTATCTGTAAATACAGTTAGAATGAAGTACGATTGATT
GATTGAGTGGTGGAAGCGCAAAAAATAAGACCACGACGAAACATAGATCG
ATCCGTAAACTATCTACAACCAAGAACTCAAATCCACGCCACGAATCA back to topprotein sequence of jgi.p|Nanoce1779_2|575093 >mRNA_1040-protein ID=mRNA_1040-protein|Name=jgi.p|Nanoce1779_2|575093|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MASAGKSPTRADGKERFLQLPSSTSTQQDVPDSGGGSSSNMPRSYGLRAR
RMPSYLQTSGTEDDNEDSDSDSSVDGGGGRRGEGERGGRETRYQSRSRGG
SVRRYSCTGVGKDDDRLSSLPGVMGGAAGGAAGASGSGGRGGGGGRGGGN
DSRKRKSPTPPPGGGGMAGADCSVMGCTKKSRGSTGRCRRHGGGVTCVVP
GCTGFSRLEGKCSVHGGAQMCLVHGCDRRARFYGRCTRHGGFVNCQMDRC
TLRAVSKGRCAKHGGKDPCRHPGCTRPRLKSKDDWCMIHSRGLGTFLIQR
QRERGQGLRPVPCTYFDPSGGCRCAEMATIGVGGPFLCPYHLLLTRCGGG
VDCKASCFLKGRCVRHAGEEAVEGECQQPGCCTKAAVDDPYGFCVEHKQW
KHFCRHWGCIARALVVGGWCPLHHLQFAGGQEEERVVREAMAAAAVKKRE
EGGGKAVCEGRQPKPLRCSSSSYSSASPGPGAREGEARKEGAETKVVDYW
RRADSMNSTGCRQGEAAFLSVGEGTGEMYGREGVIGRVDVPEGMDLTSSA
LYFGGAPIDMPPATGPSPVSSLPSFPLTSTLYTSFITGSVDCASDLEALS
YWHPVVREMVGWRRNEGVGRVLAIEDKEKEKEWE* back to topmRNA from alignment at scaffold_2:1075173..1077764- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1040 ID=mRNA_1040|Name=jgi.p|Nanoce1779_2|575093|organism=Nannochloropsis oceanica|type=mRNA|length=2592bp|location=Sequence derived from alignment at scaffold_2:1075173..1077764- (Nannochloropsis oceanica)
AGAATGAGCCGATCTGCCTGCTCCAGCTGAGGACATGCGCAAGGAGCAGC
TGAGTTTCGATTGATACTTCGGGACACGCAGCGCCCGTGCCTCGTTCTAT
GGCTAGTGCAGGCAAATCACCCACTCGGGCGGACGGAAAGGAAAGATTTT
TGCAGCTTCCATCTTCCACCTCCACGCAGCAGGACGTGCCAGACAGTGGA
GGGGGCAGCAGTAGCAACATGCCTCGTTCGTACGGTCTACGGGCCCGGCG
CATGCCCTCCTACCTACAAAGTAAGCCTCAGCCTCACACACTGGGTCGTC
ACAGGGTGGACATTTATCTTCCTTGACCCCCGATTGATTTATTTAGACTT
TTTCCCTTTTTTCTTAATCCCTCTCCTTCCCCGACCTCCTCCTTTCCATT
CATCCTCTCCTTAGCGTCTGGCACAGAGGACGATAATGAGGATTCGGACT
CAGACTCTTCAGTCGACGGCGGCGGCGGAAGACGAGGAGAAGGAGAAAGG
GGAGGGCGAGAGACACGATATCAGTCACGCAGTCGCGGCGGCAGTGTGAG
AAGGTATAGTTGCACAGGAGTGGGGAAAGATGATGATCGTTTGTCGTCCC
TGCCTGGGGTTATGGGTGGGGCTGCTGGTGGGGCTGCTGGTGCCAGCGGC
AGTGGTGGGCGTGGTGGTGGTGGAGGTAGAGGAGGCGGGAACGACAGCAG
AAAGCGAAAGAGCCCTACTCCTCCACCAGGGGGAGGAGGGATGGCAGGAG
CGGATTGCTCGGTGATGGGGTGCACGAAGAAGAGTCGGGGGTCGACAGGA
CGCTGTCGAAGGCATGGGGGGGGGGTGACTTGTGTTGTGCCTGGTTGCAC
GGGCTTTTCCAGGTTGGAGGGGAAATGCTCCGTGCACGGAGGAGCGCAGA
TGTGCTTAGTGCATGGGTGTGATCGACGGGCGAGGTTCTATGGACGCTGT
ACGCGGCATGGGGGGTTTGTAAATTGTCAGATGGACCGCTGCACTTTGCG
GGCGGTGAGTAAGGGGAGGTGTGCCAAGCACGGGGGCAAAGACCCATGTC
GGCATCCGGGGTGCACTCGCCCGAGGTTGAAGAGTAAGGACGATTGGTGC
ATGATCCACTCCCGAGGTTTGGGGACGTTTCTGATTCAAAGGCAGAGGGA
GCGAGGGCAGGGGCTGAGGCCTGTGCCGTGCACCTATTTTGACCCTAGCG
GCGGGTGTAGGTGTGCGGAAATGGCGACTATCGGCGTCGGGGGGCCATTT
CTGTGCCCGTATCATTTATTGTTGACTAGGTGTGGAGGGGGGGTGGATTG
CAAGGCTTCCTGTTTTCTAAAAGGGCGGTGTGTGCGGCACGCAGGGGAGG
AGGCAGTAGAAGGGGAGTGCCAGCAACCAGGGTGTTGCACGAAGGCCGCG
GTGGACGATCCGTACGGGTTTTGTGTGGAGCATAAGCAATGGAAACATTT
TTGCCGACATTGGGGCTGTATTGCCCGTGCACTGGTGGTGGGGGGATGGT
GTCCTTTGCATCACCTGCAGTTTGCCGGGGGGCAGGAGGAAGAGAGGGTG
GTGCGAGAGGCCATGGCGGCAGCAGCGGTCAAGAAGAGGGAGGAGGGAGG
AGGGAAAGCGGTCTGTGAGGGAAGACAGCCCAAGCCGTTAAGGTGCTCCT
CGTCGTCATATTCCTCGGCCTCGCCAGGGCCAGGAGCGCGGGAAGGAGAG
GCAAGGAAGGAGGGAGCGGAGACGAAAGTTGTTGATTATTGGAGGAGAGC
TGATTCGATGAATTCGACGGGCTGTCGACAAGGTGAGGCGGCGTTTTTAA
GTGTGGGGGAAGGGACAGGAGAAATGTACGGGAGGGAGGGAGTGATAGGG
AGGGTTGACGTCCCAGAGGGAATGGACTTGACGTCCTCCGCTCTTTATTT
TGGAGGGGCGCCAATTGACATGCCGCCTGCAACTGGGCCCTCGCCCGTGT
CATCCCTCCCCTCCTTTCCGTTGACCTCGACGTTATATACGTCTTTCATA
ACGGGCTCGGTGGATTGCGCGTCGGATTTGGAGGCCTTGTCCTACTGGCA
TCCGGTTGTGAGAGAGATGGTAGGGTGGCGTAGAAATGAGGGGGTGGGGA
GGGTGTTGGCGATAGAGGATAAGGAGAAGGAGAAAGAGTGGGAGTGAGGG
AGAGCAGAGAAGAAGAAGGGTGAGTGCGAGTAGGGAAAGGAGGTGTGAAT
TGATGTAAGCTGTTGTGTTGTAGCACCTTTCTGTAATTATTTGTGACGTT
GGCAAGTCGAAAGAGTGAGCTACAGGAAGAACGGGAGGGAGAAGATGACC
TGGGGAAGCTTGGAAAGACCCAGAGGCCGAGCAAGATACAAGCAGCCTTG
TGGTTGGGAAAATGTTGTCTATCGTGTGGCACGTGGGCGGAAGATATGGA
TGACTTATGCTCTTTGTCTCTACTTTTCTTGCTGTCAGCGGTAGTGCTCC
ACAGTATTATCTGTAAATACAGTTAGAATGAAGTACGATTGATTGATTGA
GTGGTGGAAGCGCAAAAAATAAGACCACGACGAAACATAGATCGATCCGT
AAACTATCTACAACCAAGAACTCAAATCCACGCCACGAATCA back to topCoding sequence (CDS) from alignment at scaffold_2:1075173..1077764- >mRNA_1040 ID=mRNA_1040|Name=jgi.p|Nanoce1779_2|575093|organism=Nannochloropsis oceanica|type=CDS|length=3810bp|location=Sequence derived from alignment at scaffold_2:1075173..1077764- (Nannochloropsis oceanica)
CGTCTGGCACAGAGGACGATAATGAGGATTCGGACTCAGACTCTTCAGTC
GACGGCGGCGGCGGAAGACGAGGAGAAGGAGAAAGGGGAGGGCGAGAGAC
ACGATATCAGTCACGCAGTCGCGGCGGCAGTGTGAGAAGGTATAGTTGCA
CAGGAGTGGGGAAAGATGATGATCGTTTGTCGTCCCTGCCTGGGGTTATG
GGTGGGGCTGCTGGTGGGGCTGCTGGTGCCAGCGGCAGTGGTGGGCGTGG
TGGTGGTGGAGGTAGAGGAGGCGGGAACGACAGCAGAAAGCGAAAGAGCC
CTACTCCTCCACCAGGGGGAGGAGGGATGGCAGGAGCGGATTGCTCGGTG
ATGGGGTGCACGAAGAAGAGTCGGGGGTCGACAGGACGCTGTCGAAGGCA
TGGGGGGGGGGTGACTTGTGTTGTGCCTGGTTGCACGGGCTTTTCCAGGT
TGGAGGGGAAATGCTCCGTGCACGGAGGAGCGCAGATGTGCTTAGTGCAT
GGGTGTGATCGACGGGCGAGGTTCTATGGACGCTGTACGCGGCATGGGGG
GTTTGTAAATTGTCAGATGGACCGCTGCACTTTGCGGGCGGTGAGTAAGG
GGAGGTGTGCCAAGCACGGGGGCAAAGACCCATGTCGGCATCCGGGGTGC
ACTCGCCCGAGGTTGAAGAGTAAGGACGATTGGTGCATGATCCACTCCCG
AGGTTTGGGGACGTTTCTGATTCAAAGGCAGAGGGAGCGAGGGCAGGGGC
TGAGGCCTGTGCCGTGCACCTATTTTGACCCTAGCGGCGGGTGTAGGTGT
GCGGAAATGGCGACTATCGGCGTCGGGGGGCCATTTCTGTGCCCGTATCA
TTTATTGTTGACTAGGTGTGGAGGGGGGGTGGATTGCAAGGCTTCCTGTT
TTCTAAAAGGGCGGTGTGTGCGGCACGCAGGGGAGGAGGCAGTAGAAGGG
GAGTGCCAGCAACCAGGGTGTTGCACGAAGGCCGCGGTGGACGATCCGTA
CGGGTTTTGTGTGGAGCATAAGCAATGGAAACATTTTTGCCGACATTGGG
GCTGTATTGCCCGTGCACTGGTGGTGGGGGGATGGTGTCCTTTGCATCAC
CTGCAGTTTGCCGGGGGGCAGGAGGAAGAGAGGGTGGTGCGAGAGGCCAT
GGCGGCAGCAGCGGTCAAGAAGAGGGAGGAGGGAGGAGGGAAAGCGGTCT
GTGAGGGAAGACAGCCCAAGCCGTTAAGGTGCTCCTCGTCGTCATATTCC
TCGGCCTCGCCAGGGCCAGGAGCGCGGGAAGGAGAGGCAAGGAAGGAGGG
AGCGGAGACGAAAGTTGTTGATTATTGGAGGAGAGCTGATTCGATGAATT
CGACGGGCTGTCGACAAGGTGAGGCGGCGTTTTTAAGTGTGGGGGAAGGG
ACAGGAGAAATGTACGGGAGGGAGGGAGTGATAGGGAGGGTTGACGTCCC
AGAGGGAATGGACTTGACGTCCTCCGCTCTTTATTTTGGAGGGGCGCCAA
TTGACATGCCGCCTGCAACTGGGCCCTCGCCCGTGTCATCCCTCCCCTCC
TTTCCGTTGACCTCGACGTTATATACGTCTTTCATAACGGGCTCGGTGGA
TTGCGCGTCGGATTTGGAGGCCTTGTCCTACTGGCATCCGGTTGTGAGAG
AGATGGTAGGGTGGCGTAGAAATGAGGGGGTGGGGAGGGTGTTGGCGATA
GAGGATAAGGAGAAGGAGAAAGAGTGGGAGTGAATGGCTAGTGCAGGCAA
ATCACCCACTCGGGCGGACGGAAAGGAAAGATTTTTGCAGCTTCCATCTT
CCACCTCCACGCAGCAGGACGTGCCAGACAGTGGAGGGGGCAGCAGTAGC
AACATGCCTCGTTCGTACGGTCTACGGGCCCGGCGCATGCCCTCCTACCT
ACAAACGTCTGGCACAGAGGACGATAATGAGGATTCGGACTCAGACTCTT
CAGTCGACGGCGGCGGCGGAAGACGAGGAGAAGGAGAAAGGGGAGGGCGA
GAGACACGATATCAGTCACGCAGTCGCGGCGGCAGTGTGAGAAGGTATAG
TTGCACAGGAGTGGGGAAAGATGATGATCGTTTGTCGTCCCTGCCTGGGG
TTATGGGTGGGGCTGCTGGTGGGGCTGCTGGTGCCAGCGGCAGTGGTGGG
CGTGGTGGTGGTGGAGGTAGAGGAGGCGGGAACGACAGCAGAAAGCGAAA
GAGCCCTACTCCTCCACCAGGGGGAGGAGGGATGGCAGGAGCGGATTGCT
CGGTGATGGGGTGCACGAAGAAGAGTCGGGGGTCGACAGGACGCTGTCGA
AGGCATGGGGGGGGGGTGACTTGTGTTGTGCCTGGTTGCACGGGCTTTTC
CAGGTTGGAGGGGAAATGCTCCGTGCACGGAGGAGCGCAGATGTGCTTAG
TGCATGGGTGTGATCGACGGGCGAGGTTCTATGGACGCTGTACGCGGCAT
GGGGGGTTTGTAAATTGTCAGATGGACCGCTGCACTTTGCGGGCGGTGAG
TAAGGGGAGGTGTGCCAAGCACGGGGGCAAAGACCCATGTCGGCATCCGG
GGTGCACTCGCCCGAGGTTGAAGAGTAAGGACGATTGGTGCATGATCCAC
TCCCGAGGTTTGGGGACGTTTCTGATTCAAAGGCAGAGGGAGCGAGGGCA
GGGGCTGAGGCCTGTGCCGTGCACCTATTTTGACCCTAGCGGCGGGTGTA
GGTGTGCGGAAATGGCGACTATCGGCGTCGGGGGGCCATTTCTGTGCCCG
TATCATTTATTGTTGACTAGGTGTGGAGGGGGGGTGGATTGCAAGGCTTC
CTGTTTTCTAAAAGGGCGGTGTGTGCGGCACGCAGGGGAGGAGGCAGTAG
AAGGGGAGTGCCAGCAACCAGGGTGTTGCACGAAGGCCGCGGTGGACGAT
CCGTACGGGTTTTGTGTGGAGCATAAGCAATGGAAACATTTTTGCCGACA
TTGGGGCTGTATTGCCCGTGCACTGGTGGTGGGGGGATGGTGTCCTTTGC
ATCACCTGCAGTTTGCCGGGGGGCAGGAGGAAGAGAGGGTGGTGCGAGAG
GCCATGGCGGCAGCAGCGGTCAAGAAGAGGGAGGAGGGAGGAGGGAAAGC
GGTCTGTGAGGGAAGACAGCCCAAGCCGTTAAGGTGCTCCTCGTCGTCAT
ATTCCTCGGCCTCGCCAGGGCCAGGAGCGCGGGAAGGAGAGGCAAGGAAG
GAGGGAGCGGAGACGAAAGTTGTTGATTATTGGAGGAGAGCTGATTCGAT
GAATTCGACGGGCTGTCGACAAGGTGAGGCGGCGTTTTTAAGTGTGGGGG
AAGGGACAGGAGAAATGTACGGGAGGGAGGGAGTGATAGGGAGGGTTGAC
GTCCCAGAGGGAATGGACTTGACGTCCTCCGCTCTTTATTTTGGAGGGGC
GCCAATTGACATGCCGCCTGCAACTGGGCCCTCGCCCGTGTCATCCCTCC
CCTCCTTTCCGTTGACCTCGACGTTATATACGTCTTTCATAACGGGCTCG
GTGGATTGCGCGTCGGATTTGGAGGCCTTGTCCTACTGGCATCCGGTTGT
GAGAGAGATGGTAGGGTGGCGTAGAAATGAGGGGGTGGGGAGGGTGTTGG
CGATAGAGGATAAGGAGAAGGAGAAAGAGTGGGAGTGAATGGCTAGTGCA
GGCAAATCACCCACTCGGGCGGACGGAAAGGAAAGATTTTTGCAGCTTCC
ATCTTCCACCTCCACGCAGCAGGACGTGCCAGACAGTGGAGGGGGCAGCA
GTAGCAACATGCCTCGTTCGTACGGTCTACGGGCCCGGCGCATGCCCTCC
TACCTACAAA back to top
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