jgi.p|Nanoce1779_2|523627, mRNA_104 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|523627
Unique Name	mRNA_104
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1287
Alignment location	scaffold_3:280824..282110 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	523713
Track	FilteredModels2
ProteinId	523627

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:280824..282110 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|523627	gene_104	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|523627	mRNA_104-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_104	CDS_104	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:280824..282110+
coding sequence from alignment at scaffold_3:280824..282110+

mRNA sequence

>mRNA_104 ID=mRNA_104|Name=jgi.p|Nanoce1779_2|523627|organism=Nannochloropsis oceanica|type=mRNA|length=1287bp
ATGCATAGCGTCTTTCAAACAGCTGCGTTATTTGAACCGATCTTGACGAA
GGGGGTGAGTGAAAGGGCCGCGGAGAGAAACGTGGAATTTCTGCGAGAAT
ATGCCGGGTTTTTGTTTGAGAGGAGGGAGGGAGGGAGGGTGGATGGGGCA
GTGCAGGTAGAAAGAGAGATTAGGAGCAGTGGGAATAGCACTGACCTGGC
GTTCACCTCTGCACTCCGAGGCGGACAAGGACGGCATTCACACCCTGCAT
CTTTGGCCCTCTTCCCTCTTTTCCCTCTTTCCCCCCCTTCCTCGCCCTCG
ATCAATGAATCGGAGGTGGGTAACGGGGACATTATGGGTGTAATTCGAAT
GGACGGGCTTGACCCGATGCTGGCCTGGGGGATGGGGGCGACCACGGGGC
ATATGGCCGTGGCCATGTGGATGGACTTGGAGGAGGAGGGAGGGGAGGAA
GGAGGGAAAGAGTTGTACATCCTGGAGAGCCAGATAAAGAGCAGTTACTG
GCCGCAGAGTAATGTGCAACGCACGCCTTTTCGACAGTGGCTGCAGTGGG
CCGAGGAGGCAAATTACAATGTCTTGCATGTCCCTTTGAGCGACGAGGCA
CGGGGGAGATTCAATGCTGAGAAGGCCCTGGCTTTCTTCAGGGAAATGGA
GGGCTTAGCGTATGGGTATCACTCACTCCTGTGGGGTTGGGTTGACACGG
AGAGGGAGAACTATCCCTGCTTGCCCCCTGATTTCACGAGGTGTATGGAG
TGGAATTTCTTGGAGGTGGCTTTTGGGTTGGTTGAGCGCCATGTGCCTGC
GATTGCGGATTTGTTGTGGCGGGAGGCGTTTAATTTGAGGGTGGGGACGG
AGGGGTTGACCACGTCGGAGGTGTGGATGGAGGTAGGGAAGCAGGCGGGG
GGGGGGGGAGGGAGGGATGGGTTGGTGAGGGCGTCGGCTGGGGTGCCGAT
GATGGTGGAGAAGGATGACTGGATGTACCATACGACAAGGGAAACGAAGG
AGGGAGAGAAAGAGGAGGTAATGGGGCGGGCGATGGTATGTTGTGTCTTT
GTGTGTGCAATGTGGAAGGCCGCGGGGGTGTTGGGGGAGGAAGGGGGGGA
GATAAATTGCGGAGAGCTGACAAACGCCGATGATGTAATGCTGGCGATAT
TCAGGGGCGACACGAAGCAGATTCTGGGGGAATGGGAAATGTTCTTGCCG
GCATTTAATTTGAAGCAGCCGTTTGCACACATGGATGAAAAATGCCCGAC
TCTGGGGCCGGCGTATGAACAGCCGCCTGACTGCTAG

protein sequence of jgi.p|Nanoce1779_2|523627

>mRNA_104-protein ID=mRNA_104-protein|Name=jgi.p|Nanoce1779_2|523627|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MHSVFQTAALFEPILTKGVSERAAERNVEFLREYAGFLFERREGGRVDGA
VQVEREIRSSGNSTDLAFTSALRGGQGRHSHPASLALFPLFPLSPPSSPS
INESEVGNGDIMGVIRMDGLDPMLAWGMGATTGHMAVAMWMDLEEEGGEE
GGKELYILESQIKSSYWPQSNVQRTPFRQWLQWAEEANYNVLHVPLSDEA
RGRFNAEKALAFFREMEGLAYGYHSLLWGWVDTERENYPCLPPDFTRCME
WNFLEVAFGLVERHVPAIADLLWREAFNLRVGTEGLTTSEVWMEVGKQAG
GGGGRDGLVRASAGVPMMVEKDDWMYHTTRETKEGEKEEVMGRAMVCCVF
VCAMWKAAGVLGEEGGEINCGELTNADDVMLAIFRGDTKQILGEWEMFLP
AFNLKQPFAHMDEKCPTLGPAYEQPPDC*

mRNA from alignment at scaffold_3:280824..282110+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_104 ID=mRNA_104|Name=jgi.p|Nanoce1779_2|523627|organism=Nannochloropsis oceanica|type=mRNA|length=1287bp|location=Sequence derived from alignment at scaffold_3:280824..282110+ (Nannochloropsis oceanica)
ATGCATAGCGTCTTTCAAACAGCTGCGTTATTTGAACCGATCTTGACGAA
GGGGGTGAGTGAAAGGGCCGCGGAGAGAAACGTGGAATTTCTGCGAGAAT
ATGCCGGGTTTTTGTTTGAGAGGAGGGAGGGAGGGAGGGTGGATGGGGCA
GTGCAGGTAGAAAGAGAGATTAGGAGCAGTGGGAATAGCACTGACCTGGC
GTTCACCTCTGCACTCCGAGGCGGACAAGGACGGCATTCACACCCTGCAT
CTTTGGCCCTCTTCCCTCTTTTCCCTCTTTCCCCCCCTTCCTCGCCCTCG
ATCAATGAATCGGAGGTGGGTAACGGGGACATTATGGGTGTAATTCGAAT
GGACGGGCTTGACCCGATGCTGGCCTGGGGGATGGGGGCGACCACGGGGC
ATATGGCCGTGGCCATGTGGATGGACTTGGAGGAGGAGGGAGGGGAGGAA
GGAGGGAAAGAGTTGTACATCCTGGAGAGCCAGATAAAGAGCAGTTACTG
GCCGCAGAGTAATGTGCAACGCACGCCTTTTCGACAGTGGCTGCAGTGGG
CCGAGGAGGCAAATTACAATGTCTTGCATGTCCCTTTGAGCGACGAGGCA
CGGGGGAGATTCAATGCTGAGAAGGCCCTGGCTTTCTTCAGGGAAATGGA
GGGCTTAGCGTATGGGTATCACTCACTCCTGTGGGGTTGGGTTGACACGG
AGAGGGAGAACTATCCCTGCTTGCCCCCTGATTTCACGAGGTGTATGGAG
TGGAATTTCTTGGAGGTGGCTTTTGGGTTGGTTGAGCGCCATGTGCCTGC
GATTGCGGATTTGTTGTGGCGGGAGGCGTTTAATTTGAGGGTGGGGACGG
AGGGGTTGACCACGTCGGAGGTGTGGATGGAGGTAGGGAAGCAGGCGGGG
GGGGGGGGAGGGAGGGATGGGTTGGTGAGGGCGTCGGCTGGGGTGCCGAT
GATGGTGGAGAAGGATGACTGGATGTACCATACGACAAGGGAAACGAAGG
AGGGAGAGAAAGAGGAGGTAATGGGGCGGGCGATGGTATGTTGTGTCTTT
GTGTGTGCAATGTGGAAGGCCGCGGGGGTGTTGGGGGAGGAAGGGGGGGA
GATAAATTGCGGAGAGCTGACAAACGCCGATGATGTAATGCTGGCGATAT
TCAGGGGCGACACGAAGCAGATTCTGGGGGAATGGGAAATGTTCTTGCCG
GCATTTAATTTGAAGCAGCCGTTTGCACACATGGATGAAAAATGCCCGAC
TCTGGGGCCGGCGTATGAACAGCCGCCTGACTGCTAG

Coding sequence (CDS) from alignment at scaffold_3:280824..282110+

>mRNA_104 ID=mRNA_104|Name=jgi.p|Nanoce1779_2|523627|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at scaffold_3:280824..282110+ (Nannochloropsis oceanica)
ATGCATAGCGTCTTTCAAACAGCTGCGTTATTTGAACCGATCTTGACGAA
GGGGGTGAGTGAAAGGGCCGCGGAGAGAAACGTGGAATTTCTGCGAGAAT
ATGCCGGGTTTTTGTTTGAGAGGAGGGAGGGAGGGAGGGTGGATGGGGCA
GTGCAGGTAGAAAGAGAGATTAGGAGCAGTGGGAATAGCACTGACCTGGC
GTTCACCTCTGCACTCCGAGGCGGACAAGGACGGCATTCACACCCTGCAT
CTTTGGCCCTCTTCCCTCTTTTCCCTCTTTCCCCCCCTTCCTCGCCCTCG
ATCAATGAATCGGAGGTGGGTAACGGGGACATTATGGGTGTAATTCGAAT
GGACGGGCTTGACCCGATGCTGGCCTGGGGGATGGGGGCGACCACGGGGC
ATATGGCCGTGGCCATGTGGATGGACTTGGAGGAGGAGGGAGGGGAGGAA
GGAGGGAAAGAGTTGTACATCCTGGAGAGCCAGATAAAGAGCAGTTACTG
GCCGCAGAGTAATGTGCAACGCACGCCTTTTCGACAGTGGCTGCAGTGGG
CCGAGGAGGCAAATTACAATGTCTTGCATGTCCCTTTGAGCGACGAGGCA
CGGGGGAGATTCAATGCTGAGAAGGCCCTGGCTTTCTTCAGGGAAATGGA
GGGCTTAGCGTATGGGTATCACTCACTCCTGTGGGGTTGGGTTGACACGG
AGAGGGAGAACTATCCCTGCTTGCCCCCTGATTTCACGAGGTGTATGGAG
TGGAATTTCTTGGAGGTGGCTTTTGGGTTGGTTGAGCGCCATGTGCCTGC
GATTGCGGATTTGTTGTGGCGGGAGGCGTTTAATTTGAGGGTGGGGACGG
AGGGGTTGACCACGTCGGAGGTGTGGATGGAGGTAGGGAAGCAGGCGGGG
GGGGGGGGAGGGAGGGATGGGTTGGTGAGGGCGTCGGCTGGGGTGCCGAT
GATGGTGGAGAAGGATGACTGGATGTACCATACGACAAGGGAAACGAAGG
AGGGAGAGAAAGAGGAGGTAATGGGGCGGGCGATGGTATGTTGTGTCTTT
GTGTGTGCAATGTGGAAGGCCGCGGGGGTGTTGGGGGAGGAAGGGGGGGA
GATAAATTGCGGAGAGCTGACAAACGCCGATGATGTAATGCTGGCGATAT
TCAGGGGCGACACGAAGCAGATTCTGGGGGAATGGGAAATGTTCTTGCCG
GCATTTAATTTGAAGCAGCCGTTTGCACACATGGATGAAAAATGCCCGAC
TCTGGGGCCGGCGTATGAACAGCCGCCTGACTGCTAG

Synonyms

Publications