jgi.p|Nanoce1779_2|575089, mRNA_1038 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575089
Unique Name	mRNA_1038
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	921
Alignment location	scaffold_2:1070794..1071714 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575175
Track	FilteredModels2
ProteinId	575089

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1070794..1071714 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575089	gene_1038	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575089	mRNA_1038-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1038	CDS_1038	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1070794..1071714+
coding sequence from alignment at scaffold_2:1070794..1071714+

mRNA sequence

>mRNA_1038 ID=mRNA_1038|Name=jgi.p|Nanoce1779_2|575089|organism=Nannochloropsis oceanica|type=mRNA|length=921bp
CAGGTATTGGCGGAGGTGGAGCGTGTACTCAAGCCGGGGGGGAAGGTGTT
TTTCCTCGAGCACATAGCCAGTCCCGAGGGGTCTTGGACGCGGCTGTTTC
AGAAAACAATTGAGCCTGTCTGGAAGATTGCGTTGGATGGGTGCACCTTT
GCCGATACGCACCTGCATTTGGACCAGTTTCGGACGCAGGGGGATGAAGG
TTTTGAGGTCTATTATGAGTTTTTTGATGCCCCCATGCCTGTAGCCTTTA
TTAAGCCGCATTTGATGGGGCATGCGGTGAAGAAAGTGGGTGATGGCAAG
AAGGAGATGGAGGGGTAGAAGAGAAGAAGAACATGCATTTGGAAATATGG
CATATTTGACGATAATGTCTTCTTTTGTTTGTCCTCTGCACTCGGGATGG
TAATCATACTGCTTCACTACCTTTCCCGCCTCTTCCCCCTCTTTTTTTTC
CTTTTCTTCTCTCTTGCTCTCTTACCTCCGCATTCCGCTCGGCGGTTCAT
GTCTTACACAACTAGACGCAGTACCTCTCGCAACCTTGCTTCTGGAAAAA
GCTACATTTCCGCATGCTCACTTCCACTTAATCCTTTTTTCACGCGGTGC
ACACCGCCCCGAGAGCTCCGAGCCATATCTTCCGACTCGCCTTCCTCGTC
CCCGTCGACATCTGCTTCCCCTTTCATACCTTTCTCCTTCTTGACCAAGA
TGTCTGACTTTTTCTACCGTAATCATCACTCACCTTGCCTACCATCCCCG
AAAGGAGGCGGTGAATGTTGTTTTGAAAGGGACATGAGATGAAGCGGTCC
TTTCGCGTCATATAAAAGATCAACGAACCAGTCGGGGTTGATCTTATTAA
GGAGGGTGTCGAAGTACTTGTTGGGAAATATGACGTGCTTGGAGGCACCG
CACTGCCCCCTGTTTGAAGGG

protein sequence of jgi.p|Nanoce1779_2|575089

>mRNA_1038-protein ID=mRNA_1038-protein|Name=jgi.p|Nanoce1779_2|575089|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MVIILLHYLSRLFPLFFFLFFSLALLPPHSARRFMSYTTRRSTSRNLASG
KSYISACSLPLNPFFTRCTPPRELRAISSDSPSSSPSTSASPFIPFSFLT
KMSDFFYRNHHSPCLPSPKGGGECCFERDMR*

mRNA from alignment at scaffold_2:1070794..1071714+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1038 ID=mRNA_1038|Name=jgi.p|Nanoce1779_2|575089|organism=Nannochloropsis oceanica|type=mRNA|length=921bp|location=Sequence derived from alignment at scaffold_2:1070794..1071714+ (Nannochloropsis oceanica)
CAGGTATTGGCGGAGGTGGAGCGTGTACTCAAGCCGGGGGGGAAGGTGTT
TTTCCTCGAGCACATAGCCAGTCCCGAGGGGTCTTGGACGCGGCTGTTTC
AGAAAACAATTGAGCCTGTCTGGAAGATTGCGTTGGATGGGTGCACCTTT
GCCGATACGCACCTGCATTTGGACCAGTTTCGGACGCAGGGGGATGAAGG
TTTTGAGGTCTATTATGAGTTTTTTGATGCCCCCATGCCTGTAGCCTTTA
TTAAGCCGCATTTGATGGGGCATGCGGTGAAGAAAGTGGGTGATGGCAAG
AAGGAGATGGAGGGGTAGAAGAGAAGAAGAACATGCATTTGGAAATATGG
CATATTTGACGATAATGTCTTCTTTTGTTTGTCCTCTGCACTCGGGATGG
TAATCATACTGCTTCACTACCTTTCCCGCCTCTTCCCCCTCTTTTTTTTC
CTTTTCTTCTCTCTTGCTCTCTTACCTCCGCATTCCGCTCGGCGGTTCAT
GTCTTACACAACTAGACGCAGTACCTCTCGCAACCTTGCTTCTGGAAAAA
GCTACATTTCCGCATGCTCACTTCCACTTAATCCTTTTTTCACGCGGTGC
ACACCGCCCCGAGAGCTCCGAGCCATATCTTCCGACTCGCCTTCCTCGTC
CCCGTCGACATCTGCTTCCCCTTTCATACCTTTCTCCTTCTTGACCAAGA
TGTCTGACTTTTTCTACCGTAATCATCACTCACCTTGCCTACCATCCCCG
AAAGGAGGCGGTGAATGTTGTTTTGAAAGGGACATGAGATGAAGCGGTCC
TTTCGCGTCATATAAAAGATCAACGAACCAGTCGGGGTTGATCTTATTAA
GGAGGGTGTCGAAGTACTTGTTGGGAAATATGACGTGCTTGGAGGCACCG
CACTGCCCCCTGTTTGAAGGG

Coding sequence (CDS) from alignment at scaffold_2:1070794..1071714+

>mRNA_1038 ID=mRNA_1038|Name=jgi.p|Nanoce1779_2|575089|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_2:1070794..1071714+ (Nannochloropsis oceanica)
ATGGTAATCATACTGCTTCACTACCTTTCCCGCCTCTTCCCCCTCTTTTT
TTTCCTTTTCTTCTCTCTTGCTCTCTTACCTCCGCATTCCGCTCGGCGGT
TCATGTCTTACACAACTAGACGCAGTACCTCTCGCAACCTTGCTTCTGGA
AAAAGCTACATTTCCGCATGCTCACTTCCACTTAATCCTTTTTTCACGCG
GTGCACACCGCCCCGAGAGCTCCGAGCCATATCTTCCGACTCGCCTTCCT
CGTCCCCGTCGACATCTGCTTCCCCTTTCATACCTTTCTCCTTCTTGACC
AAGATGTCTGACTTTTTCTACCGTAATCATCACTCACCTTGCCTACCATC
CCCGAAAGGAGGCGGTGAATGTTGTTTTGAAAGGGACATGAGATGA

Synonyms

Publications