jgi.p|Nanoce1779_2|536811, mRNA_1037 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|536811
Unique Name	mRNA_1037
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2294
Alignment location	scaffold_2:1069421..1071714 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	536897
Track	FilteredModels2
ProteinId	536811

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1069421..1071714 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|536811	gene_1037	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|536811	mRNA_1037-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1037	CDS_1037	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1069421..1071714+
coding sequence from alignment at scaffold_2:1069421..1071714+

mRNA sequence

>mRNA_1037 ID=mRNA_1037|Name=jgi.p|Nanoce1779_2|536811|organism=Nannochloropsis oceanica|type=mRNA|length=2294bp
GCATTCGCTCGGCATATACAGGATGTGTTGTTCTCCCTCTTGTTTTCGAC
ATTGGCGAATTTGGTGTATCCGTCAGTATCGTCTTTGGTCTCGAGAAGTG
TTCCGCCTAGTAAGCAGGGGGAGGCCTTGGGAGCCATGAATGGAATTAGG
GCATTGACTGAAGGATTCGGTCCGCTGGTGTTTGGGTTTTTAATGTTCAT
GTGTCAGGATACCTGGGCTCCAGGAGCTCCGTATTTGTTGGCGAGCGCTT
GTGGTGTGGCTGCGCTTTATTATTCGACCAAATTACCCAGTGAGGCGGAG
GTGTGGGAGTATGAGAAAAGAATGCTGAGGGAGGAGGGCACGGTGGAGGC
CGTGGGGCTGTTGTCGGAGGAAGGACAACAGGAGGAGGAAGAGGGAGGGG
AAGAGGAAGAGAGTGATAGGGAGCAACAAAATCCGGAGGGACATTTGCCC
AAAATTACACCGGCGGCACCGACAGCACAAGCTGTACCAGCTGCACCGCT
GCCGAACACGAAAAAGGATCCTCCAGTGGAACTAAAACATTTTGTGTCCG
TTTAGTTTGAAATCTCTTATTATTCAAAAACGATTTTGAATGTATACTAT
GACAGACTACTATGTACAGACTGGAAGAAAACGGGTGGGGGGAAGAAGGA
TCACAAAAGTAAAAAAGGGATGATGAATGCACGCAACATCCGCGCCAGAG
GACAAATAACGAATTACGGTAGACGAGAACTTCCCAGTAATTACTGTTTA
AGTGGTAACAGGGCGATAACTTAACCCACCAGTGCTTTGATCACCTGGAG
TAAACAAACACTGTGTGTAATCCAGAATTTGACACTTATATATTTTTACT
TTCTTCACTCGTCCCCTTCCCCCCTCCCCCTTCCCTCCCAGCGACAGGCG
GACAGAATCCAAGCACCAATATAATGGCATCCCTCTGCAAGCTCCTGTCC
TCCTTTCTTTTTCTCTCCACCCTCGCCGTGGCCCTTGCCCTGGGCTACCT
CCAAACGCATCCCGAATTCCGCCATCGATGGTTCGCGGATATCTGCAACT
GCCTCGTGACCGACCAACCCGAGCAGCAAGCCATCCGCTGCTCCCTCCTC
AAGGACGTCCGAGGCGATGTGTTAGAGCTCGGCCCGGGACCAGCCACGAA
CATGGAGTGCCTTGCAGCCCATGCGGAAGGGCAGATAAAGTCATACGTTG
GCATTGAACCCAATGTGTATATGCACACGATTTTTCGGGACAAGACGTCG
CATTTGTCCGTGGGCTTTCCTGTCGATCTCAAGACACTGGAGGGAGAGAA
GCTAGGGTTGACTGATGGAAGTTTTGATACTGTGATTTTTACGCATGTGC
TTTGCAGTGTCCATAATGCTACGCAGGTATTGGCGGAGGTGGAGCGTGTA
CTCAAGCCGGGGGGGAAGGTGTTTTTCCTCGAGCACATAGCCAGTCCCGA
GGGGTCTTGGACGCGGCTGTTTCAGAAAACAATTGAGCCTGTCTGGAAGA
TTGCGTTGGATGGGTGCACCTTTGCCGATACGCACCTGCATTTGGACCAG
TTTCGGACGCAGGGGGATGAAGGTTTTGAGGTCTATTATGAGTTTTTTGA
TGCCCCCATGCCTGTAGCCTTTATTAAGCCGCATTTGATGGGGCATGCGG
TGAAGAAAGTGGGTGATGGCAAGAAGGAGATGGAGGGGTAGAAGAGAAGA
AGAACATGCATTTGGAAATATGGCATATTTGACGATAATGTCTTCTTTTG
TTTGTCCTCTGCACTCGGGATGGTAATCATACTGCTTCACTACCTTTCCC
GCCTCTTCCCCCTCTTTTTTTTCCTTTTCTTCTCTCTTGCTCTCTTACCT
CCGCATTCCGCTCGGCGGTTCATGTCTTACACAACTAGACGCAGTACCTC
TCGCAACCTTGCTTCTGGAAAAAGCTACATTTCCGCATGCTCACTTCCAC
TTAATCCTTTTTTCACGCGGTGCACACCGCCCCGAGAGCTCCGAGCCATA
TCTTCCGACTCGCCTTCCTCGTCCCCGTCGACATCTGCTTCCCCTTTCAT
ACCTTTCTCCTTCTTGACCAAGATGTCTGACTTTTTCTACCGTAATCATC
ACTCACCTTGCCTACCATCCCCGAAAGGAGGCGGTGAATGTTGTTTTGAA
AGGGACATGAGATGAAGCGGTCCTTTCGCGTCATATAAAAGATCAACGAA
CCAGTCGGGGTTGATCTTATTAAGGAGGGTGTCGAAGTACTTGTTGGGAA
ATATGACGTGCTTGGAGGCACCGCACTGCCCCCTGTTTGAAGGG

protein sequence of jgi.p|Nanoce1779_2|536811

>mRNA_1037-protein ID=mRNA_1037-protein|Name=jgi.p|Nanoce1779_2|536811|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MASLCKLLSSFLFLSTLAVALALGYLQTHPEFRHRWFADICNCLVTDQPE
QQAIRCSLLKDVRGDVLELGPGPATNMECLAAHAEGQIKSYVGIEPNVYM
HTIFRDKTSHLSVGFPVDLKTLEGEKLGLTDGSFDTVIFTHVLCSVHNAT
QVLAEVERVLKPGGKVFFLEHIASPEGSWTRLFQKTIEPVWKIALDGCTF
ADTHLHLDQFRTQGDEGFEVYYEFFDAPMPVAFIKPHLMGHAVKKVGDGK
KEMEG*

mRNA from alignment at scaffold_2:1069421..1071714+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1037 ID=mRNA_1037|Name=jgi.p|Nanoce1779_2|536811|organism=Nannochloropsis oceanica|type=mRNA|length=2294bp|location=Sequence derived from alignment at scaffold_2:1069421..1071714+ (Nannochloropsis oceanica)
GCATTCGCTCGGCATATACAGGATGTGTTGTTCTCCCTCTTGTTTTCGAC
ATTGGCGAATTTGGTGTATCCGTCAGTATCGTCTTTGGTCTCGAGAAGTG
TTCCGCCTAGTAAGCAGGGGGAGGCCTTGGGAGCCATGAATGGAATTAGG
GCATTGACTGAAGGATTCGGTCCGCTGGTGTTTGGGTTTTTAATGTTCAT
GTGTCAGGATACCTGGGCTCCAGGAGCTCCGTATTTGTTGGCGAGCGCTT
GTGGTGTGGCTGCGCTTTATTATTCGACCAAATTACCCAGTGAGGCGGAG
GTGTGGGAGTATGAGAAAAGAATGCTGAGGGAGGAGGGCACGGTGGAGGC
CGTGGGGCTGTTGTCGGAGGAAGGACAACAGGAGGAGGAAGAGGGAGGGG
AAGAGGAAGAGAGTGATAGGGAGCAACAAAATCCGGAGGGACATTTGCCC
AAAATTACACCGGCGGCACCGACAGCACAAGCTGTACCAGCTGCACCGCT
GCCGAACACGAAAAAGGATCCTCCAGTGGAACTAAAACATTTTGTGTCCG
TTTAGTTTGAAATCTCTTATTATTCAAAAACGATTTTGAATGTATACTAT
GACAGACTACTATGTACAGACTGGAAGAAAACGGGTGGGGGGAAGAAGGA
TCACAAAAGTAAAAAAGGGATGATGAATGCACGCAACATCCGCGCCAGAG
GACAAATAACGAATTACGGTAGACGAGAACTTCCCAGTAATTACTGTTTA
AGTGGTAACAGGGCGATAACTTAACCCACCAGTGCTTTGATCACCTGGAG
TAAACAAACACTGTGTGTAATCCAGAATTTGACACTTATATATTTTTACT
TTCTTCACTCGTCCCCTTCCCCCCTCCCCCTTCCCTCCCAGCGACAGGCG
GACAGAATCCAAGCACCAATATAATGGCATCCCTCTGCAAGCTCCTGTCC
TCCTTTCTTTTTCTCTCCACCCTCGCCGTGGCCCTTGCCCTGGGCTACCT
CCAAACGCATCCCGAATTCCGCCATCGATGGTTCGCGGATATCTGCAACT
GCCTCGTGACCGACCAACCCGAGCAGCAAGCCATCCGCTGCTCCCTCCTC
AAGGACGTCCGAGGCGATGTGTTAGAGCTCGGCCCGGGACCAGCCACGAA
CATGGAGTGCCTTGCAGCCCATGCGGAAGGGCAGATAAAGTCATACGTTG
GCATTGAACCCAATGTGTATATGCACACGATTTTTCGGGACAAGACGTCG
CATTTGTCCGTGGGCTTTCCTGTCGATCTCAAGACACTGGAGGGAGAGAA
GCTAGGGTTGACTGATGGAAGTTTTGATACTGTGATTTTTACGCATGTGC
TTTGCAGTGTCCATAATGCTACGCAGGTATTGGCGGAGGTGGAGCGTGTA
CTCAAGCCGGGGGGGAAGGTGTTTTTCCTCGAGCACATAGCCAGTCCCGA
GGGGTCTTGGACGCGGCTGTTTCAGAAAACAATTGAGCCTGTCTGGAAGA
TTGCGTTGGATGGGTGCACCTTTGCCGATACGCACCTGCATTTGGACCAG
TTTCGGACGCAGGGGGATGAAGGTTTTGAGGTCTATTATGAGTTTTTTGA
TGCCCCCATGCCTGTAGCCTTTATTAAGCCGCATTTGATGGGGCATGCGG
TGAAGAAAGTGGGTGATGGCAAGAAGGAGATGGAGGGGTAGAAGAGAAGA
AGAACATGCATTTGGAAATATGGCATATTTGACGATAATGTCTTCTTTTG
TTTGTCCTCTGCACTCGGGATGGTAATCATACTGCTTCACTACCTTTCCC
GCCTCTTCCCCCTCTTTTTTTTCCTTTTCTTCTCTCTTGCTCTCTTACCT
CCGCATTCCGCTCGGCGGTTCATGTCTTACACAACTAGACGCAGTACCTC
TCGCAACCTTGCTTCTGGAAAAAGCTACATTTCCGCATGCTCACTTCCAC
TTAATCCTTTTTTCACGCGGTGCACACCGCCCCGAGAGCTCCGAGCCATA
TCTTCCGACTCGCCTTCCTCGTCCCCGTCGACATCTGCTTCCCCTTTCAT
ACCTTTCTCCTTCTTGACCAAGATGTCTGACTTTTTCTACCGTAATCATC
ACTCACCTTGCCTACCATCCCCGAAAGGAGGCGGTGAATGTTGTTTTGAA
AGGGACATGAGATGAAGCGGTCCTTTCGCGTCATATAAAAGATCAACGAA
CCAGTCGGGGTTGATCTTATTAAGGAGGGTGTCGAAGTACTTGTTGGGAA
ATATGACGTGCTTGGAGGCACCGCACTGCCCCCTGTTTGAAGGG

Coding sequence (CDS) from alignment at scaffold_2:1069421..1071714+

>mRNA_1037 ID=mRNA_1037|Name=jgi.p|Nanoce1779_2|536811|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_2:1069421..1071714+ (Nannochloropsis oceanica)
ATGGCATCCCTCTGCAAGCTCCTGTCCTCCTTTCTTTTTCTCTCCACCCT
CGCCGTGGCCCTTGCCCTGGGCTACCTCCAAACGCATCCCGAATTCCGCC
ATCGATGGTTCGCGGATATCTGCAACTGCCTCGTGACCGACCAACCCGAG
CAGCAAGCCATCCGCTGCTCCCTCCTCAAGGACGTCCGAGGCGATGTGTT
AGAGCTCGGCCCGGGACCAGCCACGAACATGGAGTGCCTTGCAGCCCATG
CGGAAGGGCAGATAAAGTCATACGTTGGCATTGAACCCAATGTGTATATG
CACACGATTTTTCGGGACAAGACGTCGCATTTGTCCGTGGGCTTTCCTGT
CGATCTCAAGACACTGGAGGGAGAGAAGCTAGGGTTGACTGATGGAAGTT
TTGATACTGTGATTTTTACGCATGTGCTTTGCAGTGTCCATAATGCTACG
CAGGTATTGGCGGAGGTGGAGCGTGTACTCAAGCCGGGGGGGAAGGTGTT
TTTCCTCGAGCACATAGCCAGTCCCGAGGGGTCTTGGACGCGGCTGTTTC
AGAAAACAATTGAGCCTGTCTGGAAGATTGCGTTGGATGGGTGCACCTTT
GCCGATACGCACCTGCATTTGGACCAGTTTCGGACGCAGGGGGATGAAGG
TTTTGAGGTCTATTATGAGTTTTTTGATGCCCCCATGCCTGTAGCCTTTA
TTAAGCCGCATTTGATGGGGCATGCGGTGAAGAAAGTGGGTGATGGCAAG
AAGGAGATGGAGGGGTAG

Synonyms

Publications