jgi.p|Nanoce1779_2|575083, mRNA_1035 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|575083
Unique Name	mRNA_1035
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1886
Alignment location	scaffold_2:1065524..1067409 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575169
Track	FilteredModels2
ProteinId	575083

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1065524..1067409 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575083	gene_1035	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|575083	mRNA_1035-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1035	CDS_1035	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1065524..1067409+
coding sequence from alignment at scaffold_2:1065524..1067409+

mRNA sequence

>mRNA_1035 ID=mRNA_1035|Name=jgi.p|Nanoce1779_2|575083|organism=Nannochloropsis oceanica|type=mRNA|length=1886bp
ATGTCAGGATCGATGCATCGACAGGGACAGTCAAAGCGCTTGCCGCCACG
ATGGAGGAAGAGGAAGGTGAGGGGGAGAAGGAGGAGGAGGGGGAGGAAGA
AAATGGGAGTGGCGAGGAGGACAGGGAGGTCGCGCCAGAGGAACGAGGGA
GGCATCGGAAGGGCAATACGGACATCGCCCACTCGGCGGGCTCTGACGGC
GGGGAACAGTTTACGACTCCGTTACAGCTCGTGCAGCAATATATGGTCGT
GACGTGTAAGCTACGGTTGCCCGCTCTGGCCTGTTTCTTGCGGGTCCACA
CGCACGCCCACAAAACTGTTGTCTTTTTCTCCACCTGTGATTCAGTCGAC
TTCCACCATGCCTTGTTCAGGGCAGCACATTGGCCTGATGGGCCTCCGGG
TATCGTTGGTGAGGGGAACGATCTTGCTGCTTCCTTTTCCACTTCCTCTT
CTTCTCCATCGTCGTTGTCGTCGTCTCTTTCCACCTTGCTCGGCCAGGCC
ATGCCTGTCCACCGTCTCCACGGCAACATCCCACAAGATGAGCGCTTGCA
CACCTTCCGTACCTTCCGGGAGGCCACGAGAGGGGTCTTGTTGTGTACCG
ACGTGGCCGCCCGAGGCTTGGACCTACCCGCCGTTGACTGGATAGTTCAA
TATGACCCTCCTACAGAAGCAGCCGAGTACGTGCATCGCGTCGGGCGTAC
CGCGCGACGAGGCCGGAAAGGCCACGCTTTGCTCTTTCTTTTGCCTTCCG
AACAGGGCTATTTGGACGTGCTTAAAAAACGGGGGATTAACCCGAGCCCT
CTGTCGTTGCAGCAGACGCTCTTTCAAGCGACACCTGCTCGATTTCGTGG
TCGCTTTAGGGCGCCGGAAGAGGTGTTTTGCCTAGAGATCCAGCAACAAT
TGGAAAAGACCGTTGACATGGGTAAGGGCATTGAACAAGGCGATGAGAAG
AGCGGGTGTGGAGGAGGAGGGGGGAAGGTAGGAACAGTTGCAACTGTGAC
GACTCCGCCTTTGCTGACATTGGGGCGCAAGGCCTTTGGTTCATTCGTGC
GAGCCTATGCCACCCACCCCGTGGAGCTCAAACCCATTTTTGCAGTGCGT
GTCTTGCACCTTGGCCACGTTGCCAAGAGCTTTGCGTTAAAAGAACCACC
CACTTCGCTCAAAGTAGGGAAGGAGGTGATTAAGATTCCTGGGGTTGGGA
GCAAGGGCAAGGACAAAAGGAAGAGTGCGCGTGATGGTGGCGGCGGTGGT
GATGATGGCAAGGGCGATAGAGGCAACAAAAGGAAAGATTACCAAGCCCG
CACGACAGAGGATGGCGGAAGCACACGCAAGAACTTTTCGCCGCCGCGGC
AGCAGCCTCCAGCAGGGAAGGCCAAGCCACGCACGCGCACCGCCTACAGC
TCCGTAAGCGAGTTCAGCGCGGGGTAATAGGGTCTTCTGGGATTATGGTG
GGTGGTGTGTAAGCAGATTGTAGGGGACCAAAATAACGCAAAGAAGAAAC
ATGTTGATATGTCGTAGTCTTTTGTTGGAGAGCATTGTATTCCCGTTTCG
CCGAATTGGGTATTCCGTGATGTATGGACATGACCAAGCATCTAGTATAC
GGAGATGTGGTAGAATGAGGTCAAAATGGGTGTGTATGCCACCTTTTGGG
ATTTATTCGCGATTCGACGATCCTCGACTCATTACAAGCACTGCAATCCT
ACTTCAGCTTCTCGGAGTCCGACCAAGGCTTCTTTCCCTCCCCGAACTCG
TTCCAGAAAGCTTCGTTGCGGTCGAATCTCATCAATGAATACAACTCCAG
GTCATCTTCTGCCCGACTCTCCAATCTCCCCCGCTACCGTATCTCCCCCT
CCAATTCTTCTCACAGTGCCTCCCATCCCCGTCCTC

protein sequence of jgi.p|Nanoce1779_2|575083

>mRNA_1035-protein ID=mRNA_1035-protein|Name=jgi.p|Nanoce1779_2|575083|organism=Nannochloropsis oceanica|type=polypeptide|length=459bp
MEEEEGEGEKEEEGEEENGSGEEDREVAPEERGRHRKGNTDIAHSAGSDG
GEQFTTPLQLVQQYMVVTCKLRLPALACFLRVHTHAHKTVVFFSTCDSVD
FHHALFRAAHWPDGPPGIVGEGNDLAASFSTSSSSPSSLSSSLSTLLGQA
MPVHRLHGNIPQDERLHTFRTFREATRGVLLCTDVAARGLDLPAVDWIVQ
YDPPTEAAEYVHRVGRTARRGRKGHALLFLLPSEQGYLDVLKKRGINPSP
LSLQQTLFQATPARFRGRFRAPEEVFCLEIQQQLEKTVDMGKGIEQGDEK
SGCGGGGGKVGTVATVTTPPLLTLGRKAFGSFVRAYATHPVELKPIFAVR
VLHLGHVAKSFALKEPPTSLKVGKEVIKIPGVGSKGKDKRKSARDGGGGG
DDGKGDRGNKRKDYQARTTEDGGSTRKNFSPPRQQPPAGKAKPRTRTAYS
SVSEFSAG*

mRNA from alignment at scaffold_2:1065524..1067409+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1035 ID=mRNA_1035|Name=jgi.p|Nanoce1779_2|575083|organism=Nannochloropsis oceanica|type=mRNA|length=1886bp|location=Sequence derived from alignment at scaffold_2:1065524..1067409+ (Nannochloropsis oceanica)
ATGTCAGGATCGATGCATCGACAGGGACAGTCAAAGCGCTTGCCGCCACG
ATGGAGGAAGAGGAAGGTGAGGGGGAGAAGGAGGAGGAGGGGGAGGAAGA
AAATGGGAGTGGCGAGGAGGACAGGGAGGTCGCGCCAGAGGAACGAGGGA
GGCATCGGAAGGGCAATACGGACATCGCCCACTCGGCGGGCTCTGACGGC
GGGGAACAGTTTACGACTCCGTTACAGCTCGTGCAGCAATATATGGTCGT
GACGTGTAAGCTACGGTTGCCCGCTCTGGCCTGTTTCTTGCGGGTCCACA
CGCACGCCCACAAAACTGTTGTCTTTTTCTCCACCTGTGATTCAGTCGAC
TTCCACCATGCCTTGTTCAGGGCAGCACATTGGCCTGATGGGCCTCCGGG
TATCGTTGGTGAGGGGAACGATCTTGCTGCTTCCTTTTCCACTTCCTCTT
CTTCTCCATCGTCGTTGTCGTCGTCTCTTTCCACCTTGCTCGGCCAGGCC
ATGCCTGTCCACCGTCTCCACGGCAACATCCCACAAGATGAGCGCTTGCA
CACCTTCCGTACCTTCCGGGAGGCCACGAGAGGGGTCTTGTTGTGTACCG
ACGTGGCCGCCCGAGGCTTGGACCTACCCGCCGTTGACTGGATAGTTCAA
TATGACCCTCCTACAGAAGCAGCCGAGTACGTGCATCGCGTCGGGCGTAC
CGCGCGACGAGGCCGGAAAGGCCACGCTTTGCTCTTTCTTTTGCCTTCCG
AACAGGGCTATTTGGACGTGCTTAAAAAACGGGGGATTAACCCGAGCCCT
CTGTCGTTGCAGCAGACGCTCTTTCAAGCGACACCTGCTCGATTTCGTGG
TCGCTTTAGGGCGCCGGAAGAGGTGTTTTGCCTAGAGATCCAGCAACAAT
TGGAAAAGACCGTTGACATGGGTAAGGGCATTGAACAAGGCGATGAGAAG
AGCGGGTGTGGAGGAGGAGGGGGGAAGGTAGGAACAGTTGCAACTGTGAC
GACTCCGCCTTTGCTGACATTGGGGCGCAAGGCCTTTGGTTCATTCGTGC
GAGCCTATGCCACCCACCCCGTGGAGCTCAAACCCATTTTTGCAGTGCGT
GTCTTGCACCTTGGCCACGTTGCCAAGAGCTTTGCGTTAAAAGAACCACC
CACTTCGCTCAAAGTAGGGAAGGAGGTGATTAAGATTCCTGGGGTTGGGA
GCAAGGGCAAGGACAAAAGGAAGAGTGCGCGTGATGGTGGCGGCGGTGGT
GATGATGGCAAGGGCGATAGAGGCAACAAAAGGAAAGATTACCAAGCCCG
CACGACAGAGGATGGCGGAAGCACACGCAAGAACTTTTCGCCGCCGCGGC
AGCAGCCTCCAGCAGGGAAGGCCAAGCCACGCACGCGCACCGCCTACAGC
TCCGTAAGCGAGTTCAGCGCGGGGTAATAGGGTCTTCTGGGATTATGGTG
GGTGGTGTGTAAGCAGATTGTAGGGGACCAAAATAACGCAAAGAAGAAAC
ATGTTGATATGTCGTAGTCTTTTGTTGGAGAGCATTGTATTCCCGTTTCG
CCGAATTGGGTATTCCGTGATGTATGGACATGACCAAGCATCTAGTATAC
GGAGATGTGGTAGAATGAGGTCAAAATGGGTGTGTATGCCACCTTTTGGG
ATTTATTCGCGATTCGACGATCCTCGACTCATTACAAGCACTGCAATCCT
ACTTCAGCTTCTCGGAGTCCGACCAAGGCTTCTTTCCCTCCCCGAACTCG
TTCCAGAAAGCTTCGTTGCGGTCGAATCTCATCAATGAATACAACTCCAG
GTCATCTTCTGCCCGACTCTCCAATCTCCCCCGCTACCGTATCTCCCCCT
CCAATTCTTCTCACAGTGCCTCCCATCCCCGTCCTC

Coding sequence (CDS) from alignment at scaffold_2:1065524..1067409+

>mRNA_1035 ID=mRNA_1035|Name=jgi.p|Nanoce1779_2|575083|organism=Nannochloropsis oceanica|type=CDS|length=1377bp|location=Sequence derived from alignment at scaffold_2:1065524..1067409+ (Nannochloropsis oceanica)
ATGGAGGAAGAGGAAGGTGAGGGGGAGAAGGAGGAGGAGGGGGAGGAAGA
AAATGGGAGTGGCGAGGAGGACAGGGAGGTCGCGCCAGAGGAACGAGGGA
GGCATCGGAAGGGCAATACGGACATCGCCCACTCGGCGGGCTCTGACGGC
GGGGAACAGTTTACGACTCCGTTACAGCTCGTGCAGCAATATATGGTCGT
GACGTGTAAGCTACGGTTGCCCGCTCTGGCCTGTTTCTTGCGGGTCCACA
CGCACGCCCACAAAACTGTTGTCTTTTTCTCCACCTGTGATTCAGTCGAC
TTCCACCATGCCTTGTTCAGGGCAGCACATTGGCCTGATGGGCCTCCGGG
TATCGTTGGTGAGGGGAACGATCTTGCTGCTTCCTTTTCCACTTCCTCTT
CTTCTCCATCGTCGTTGTCGTCGTCTCTTTCCACCTTGCTCGGCCAGGCC
ATGCCTGTCCACCGTCTCCACGGCAACATCCCACAAGATGAGCGCTTGCA
CACCTTCCGTACCTTCCGGGAGGCCACGAGAGGGGTCTTGTTGTGTACCG
ACGTGGCCGCCCGAGGCTTGGACCTACCCGCCGTTGACTGGATAGTTCAA
TATGACCCTCCTACAGAAGCAGCCGAGTACGTGCATCGCGTCGGGCGTAC
CGCGCGACGAGGCCGGAAAGGCCACGCTTTGCTCTTTCTTTTGCCTTCCG
AACAGGGCTATTTGGACGTGCTTAAAAAACGGGGGATTAACCCGAGCCCT
CTGTCGTTGCAGCAGACGCTCTTTCAAGCGACACCTGCTCGATTTCGTGG
TCGCTTTAGGGCGCCGGAAGAGGTGTTTTGCCTAGAGATCCAGCAACAAT
TGGAAAAGACCGTTGACATGGGTAAGGGCATTGAACAAGGCGATGAGAAG
AGCGGGTGTGGAGGAGGAGGGGGGAAGGTAGGAACAGTTGCAACTGTGAC
GACTCCGCCTTTGCTGACATTGGGGCGCAAGGCCTTTGGTTCATTCGTGC
GAGCCTATGCCACCCACCCCGTGGAGCTCAAACCCATTTTTGCAGTGCGT
GTCTTGCACCTTGGCCACGTTGCCAAGAGCTTTGCGTTAAAAGAACCACC
CACTTCGCTCAAAGTAGGGAAGGAGGTGATTAAGATTCCTGGGGTTGGGA
GCAAGGGCAAGGACAAAAGGAAGAGTGCGCGTGATGGTGGCGGCGGTGGT
GATGATGGCAAGGGCGATAGAGGCAACAAAAGGAAAGATTACCAAGCCCG
CACGACAGAGGATGGCGGAAGCACACGCAAGAACTTTTCGCCGCCGCGGC
AGCAGCCTCCAGCAGGGAAGGCCAAGCCACGCACGCGCACCGCCTACAGC
TCCGTAAGCGAGTTCAGCGCGGGGTAA

Synonyms

Publications