jgi.p|Nanoce1779_2|509945, mRNA_1034 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|509945
Unique NamemRNA_1034
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length522
Alignment locationscaffold_2:1064848..1065369 +

Link to JBrowse

Properties
Property NameValue
TranscriptId510031
TrackFilteredModels2
ProteinId509945
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1064848..1065369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|509945gene_1034Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|509945mRNA_1034-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1034CDS_1034Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1034 ID=mRNA_1034|Name=jgi.p|Nanoce1779_2|509945|organism=Nannochloropsis oceanica|type=mRNA|length=522bp
CCCTTCTCCGCCTTAGGGCTACACAAGCACCTCGTCAGCGTCCTGGGTAC
CCCTAAGGAACACCACGGGTTCGGTCTCAAAGTCGCCACCCGCATCCAAT
CCGCCTCCCTCCCCGCCCTCCTCTCCCCCTGCCGTCCTAACGCCCTGCTC
TGCTCTGAAACAGGGTCAGGCAAGACACTTGCATACCTCCTTCCCATCCT
TCAGCACCTCCAATCTATCACCCCCCGCCCCACCCGAACGGAAGGCACTC
GTGCGATCATCGTTGCGCCGACCCGGGAGTTGTGTCATCAGATCTGCGAC
GTATTGTCACTGCTTGTTCGAGCGTTTATTTGGGTGGTTCCGGGATTGGT
CAGCGGTGGTGAGAAACGAAAGTCGGAGAAAGCGAGGTTGAGGAAGGGCG
TGATGGTGTTAGTAGGGACCCCGGGTCGACTCCTCGATCACTTGCAGAAC
AGCCAGTCATTCAATCATAAGGCAGCTGAATGGTTGGTTTTGGATGAGGT
GGACCGACTATTAGACCTGGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|509945

>mRNA_1034-protein ID=mRNA_1034-protein|Name=jgi.p|Nanoce1779_2|509945|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
PFSALGLHKHLVSVLGTPKEHHGFGLKVATRIQSASLPALLSPCRPNALL
CSETGSGKTLAYLLPILQHLQSITPRPTRTEGTRAIIVAPTRELCHQICD
VLSLLVRAFIWVVPGLVSGGEKRKSEKARLRKGVMVLVGTPGRLLDHLQN
SQSFNHKAAEWLVLDEVDRLLDLG
back to top

mRNA from alignment at scaffold_2:1064848..1065369+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1034 ID=mRNA_1034|Name=jgi.p|Nanoce1779_2|509945|organism=Nannochloropsis oceanica|type=mRNA|length=522bp|location=Sequence derived from alignment at scaffold_2:1064848..1065369+ (Nannochloropsis oceanica)
CCCTTCTCCGCCTTAGGGCTACACAAGCACCTCGTCAGCGTCCTGGGTAC
CCCTAAGGAACACCACGGGTTCGGTCTCAAAGTCGCCACCCGCATCCAAT
CCGCCTCCCTCCCCGCCCTCCTCTCCCCCTGCCGTCCTAACGCCCTGCTC
TGCTCTGAAACAGGGTCAGGCAAGACACTTGCATACCTCCTTCCCATCCT
TCAGCACCTCCAATCTATCACCCCCCGCCCCACCCGAACGGAAGGCACTC
GTGCGATCATCGTTGCGCCGACCCGGGAGTTGTGTCATCAGATCTGCGAC
GTATTGTCACTGCTTGTTCGAGCGTTTATTTGGGTGGTTCCGGGATTGGT
CAGCGGTGGTGAGAAACGAAAGTCGGAGAAAGCGAGGTTGAGGAAGGGCG
TGATGGTGTTAGTAGGGACCCCGGGTCGACTCCTCGATCACTTGCAGAAC
AGCCAGTCATTCAATCATAAGGCAGCTGAATGGTTGGTTTTGGATGAGGT
GGACCGACTATTAGACCTGGGG
back to top

Coding sequence (CDS) from alignment at scaffold_2:1064848..1065369+

>mRNA_1034 ID=mRNA_1034|Name=jgi.p|Nanoce1779_2|509945|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_2:1064848..1065369+ (Nannochloropsis oceanica)
CCCTTCTCCGCCTTAGGGCTACACAAGCACCTCGTCAGCGTCCTGGGTAC
CCCTAAGGAACACCACGGGTTCGGTCTCAAAGTCGCCACCCGCATCCAAT
CCGCCTCCCTCCCCGCCCTCCTCTCCCCCTGCCGTCCTAACGCCCTGCTC
TGCTCTGAAACAGGGTCAGGCAAGACACTTGCATACCTCCTTCCCATCCT
TCAGCACCTCCAATCTATCACCCCCCGCCCCACCCGAACGGAAGGCACTC
GTGCGATCATCGTTGCGCCGACCCGGGAGTTGTGTCATCAGATCTGCGAC
GTATTGTCACTGCTTGTTCGAGCGTTTATTTGGGTGGTTCCGGGATTGGT
CAGCGGTGGTGAGAAACGAAAGTCGGAGAAAGCGAGGTTGAGGAAGGGCG
TGATGGTGTTAGTAGGGACCCCGGGTCGACTCCTCGATCACTTGCAGAAC
AGCCAGTCATTCAATCATAAGGCAGCTGAATGGTTGGTTTTGGATGAGGT
GGACCGACTATTAGACCTGGGG
back to top
Synonyms
Publications