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Properties
Property Name | Value |
TranscriptId | 575167 |
Track | FilteredModels2 |
ProteinId | 575081 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_2 | supercontig | scaffold_2:1060517..1063559 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1033 ID=mRNA_1033|Name=jgi.p|Nanoce1779_2|575081|organism=Nannochloropsis oceanica|type=mRNA|length=3043bp ACAGGTTCAACATGAAAAATCGGAGGACCACACAAAAGCCAGGTGCGCTT GCAAAAAGAGACAGCGTCCCAGCAGCCAAGCGCAAGGGGACAGGAGGCAA GCCAATGCGCCATCCCTCTCGCGCCGCCGCAACTAAAAGGCCCACACCCG AGCATAACCCTCCGGTAGAGGAAGAAGAAGAGGGCCAAGAAGTCGATGAG GAGGACCGCGTCTTTGTCGAGGAGCACTCAGCCTTTGCAGCCAGCTTGTT ATCATTGTCTTCCGAGGGTTCCCATGAAAAACACAAGGGAAAGAAGAAGG ACTCTATGCCTGCCCCACCCAAGCCCCCTGCCCCCATGAGTGCCAAGAAA AACAACCAAAACTCTCATCTTAAAGACGAGGATGACAAAGTTGGTAAGGG ATTCTTTATTGAGACTAAGACTATGCGACGTAATGCCTCTACGGAAGGAT GGGACACGGCACGGGGGAAGGGAAACAAGGTGATTAAGGAGCGGTTGCCT ACCAAGACCATTGACGGTGCCATTCATTTTTGCACCGAGGAGGTGGAAGA AAAGGAGGAAAAAGACATTGTAGTAGCGGAAATGGAAGTCGTTGGCCCTA AGCAAGGGGAGCCACAGCCCGAAGATAAGGAGGACGACGAGGATGAGGAT GAGGATGAGGACGAAGAGGATTATGACGACGGCAGCGTGGCCAGTTCGGA CGCTTCGGAAAGCGAAGCCATCAGTCAACATCTGCGCAATGCCAGGGGTA AGGGCGATGATAAAGACAATCTGTTGTCGTCGGGACGGTTGGCGGCGGTG GCGAGTAGCCTGTCCTTGGAGGCGTTTGGGGGGGACATGCGAGCGTTGCG ACGGGCACGGTTGGAATTGAAGAAAGTGGAGATTGCGACGCTATGCGAAG CGATGCTGGAGCATCCGGAGACAGGTTTGTTGACTCGGTCGGGTAATGGG GGTGGAGGGGGAAAGGGGAGTAGGATGGCGGCGTTGCTTAGTTTATTGGA AGATGATGATGTCAAGGTGCAGGCATTAGCGATGGCGAGTTTGCTAGCTG TCTTTCGCGATCTAGCGCCAGCGTATCGGATCCGACTGCCAACGGAGAAG GAATTGCAAGTCAAGGCATCGAAGGAGGTGAAGCAAACGAGGGAGTACGA GCGCACATTCTTGTCGAGTTATCAAGCGTATCTGAAGCATTTGGAGAAGG CGAGCAAGAAGCAAACGATTGCGTCCGGCAAAAAGACCGCCGCACAAGGG AACTTGAGCACTCCAAACAACGTAATCGATGTGAGTAGCAGCGTGGCGGC CAAGTGTCTATGCGAGCTGCTGACGGCGTTGGCGCATTTTAATTTTACGA CCAATGTGCTTACCGCTGTGATACGCCTGGGGCTGGGCCCCGATGCCGCC ACAAGAGTAAGGGCTGGCCAGGCGGTTCGACGGCTGTTGGAGAGAGATCA GCAGGGGGATGTCTCTCTGACGGCGACAAAGCTAGTATGTAGGGAGGTGC AGAATCGGCGATTGCATGCACCGGACGATATGGTAAGGGCCCTGCAGGCG TTGAAGTTGCGGGTGAAAGAGGACGAGGCGGAGGAGGTCTTGCGCAAGGC CAAAATGGAGGTTAAAAAAAAGAAGAGCAAGCATAGCAAAGAGACGGCGG AGGAGGCGGAGGAGGAGGGACGGGGGGATATAATGGCTGGGTTGAAAGAG GCGGAGGCGAGAGCAGACCCCGCGCTGAGAGCAAGGTGTCAGGCGGAGAG CTTGCAGGAGGTGACCTTGTTGTATTTCCGTGTATTAAAGCAAGCAAAGA AGCCCACATTGTTGCCCGCGGCTTTGGAGGGATTGAGTCGCGTGGCGCAT TTGATCAATTTGGATACAGTAATTGATGTGTTGGATGTGTTGAAGGATTT ACTGGACCCCTCGAGGCACTTGCCGTTAGAAGCGAGTTTGCATGCTGTGC TGACGGCCTTGAGAACGTTGCAGGGCCCGGGACGAGAGCTCAAGGTGGAC GACAAGGCTTTTTTGACGTTTTTATATCAGCAATTGGGGAGGATGGGGAT GGATGGTGCAGTCAGTGGCATCAGCAGTGGCGGCAGTGCCAGCAGCAACA GTAACCGGGCTGCCGTTTTCCCCCTGCTCATCACTTGCCTCCGCAGCGCT CTGCTTGCGCGTCGTGAATTCTCCTTGGCGCGCGTTGCTGCCTTTTACAA GCGCCTGACGGGACTCGCCCTTCAACTAAACTCGCCAAACGAGGCTCGAG TTGTGCTCGGACTGATCAAAGAGCTCCCCACACGTTACCCCGGCCTTGAA CAATTGTTGGACGGAGAAGCCGACCGAGTCGCCATGGGGGTATACCAACC CGAGGCTCTAGAGCCCGAAATGAGCAACCCCCTTGCAAGTGGCGCCTGGG AATTATCCTTGCTCAAGAGTCATCATTACCACCACGCGGTCAGAAAGGCA GGAGCTGCAGCAGTAGTAGCAGCCCAAGCAGCAGGGGCCGCACATCAGAC GGCGACCCCGTGGTCCTCCTCTTCCTTTCGGATACGGAGTCATTTTACGA ATACGCATAAATATGGGGAGGTGAATATGGAGGAGGATTGGGATTTCCTG AAGCATGGCTTTGGAGGAATGTTTTCTCATATGCCGCGTTTCAATCCATT GCATGGCATGGTGCGACGGGCGGAGAGGGAGAGGAGGGGACAGCGGGTGA AATTGTATTTCGTCCAGAAGTTTTCAAATCCGGAGGTAATGGAGGGGGGT GTGAATGTGCACAAGGCGCGCCTTTTGCAGGGGACGGTGGCGGGGAGGAA GGAAGGTAAGGAGGGAGAGGAGGGAGGGGAGGTGTCGTTTAGGACATTTT TCCGGGAGACGAGGTCGCATACCAGAAAGTTATTTTTGTGCCGGAAATTG CAGCGTTCTCGAGCTTTGCTCAAGAGGTACGAGTTGCATCGCGCTGTTGG AGCTGGTGCTGGCAAGAAATAAGGAAGAGCGTGAAAGTAAAAGTAGCTAA TGGATTACAATCGACGAAAGAAAAAGTACTGACCAAATAGGTG back to topprotein sequence of jgi.p|Nanoce1779_2|575081 >mRNA_1033-protein ID=mRNA_1033-protein|Name=jgi.p|Nanoce1779_2|575081|organism=Nannochloropsis oceanica|type=polypeptide|length=987bp MKNRRTTQKPGALAKRDSVPAAKRKGTGGKPMRHPSRAAATKRPTPEHNP PVEEEEEGQEVDEEDRVFVEEHSAFAASLLSLSSEGSHEKHKGKKKDSMP APPKPPAPMSAKKNNQNSHLKDEDDKVGKGFFIETKTMRRNASTEGWDTA RGKGNKVIKERLPTKTIDGAIHFCTEEVEEKEEKDIVVAEMEVVGPKQGE PQPEDKEDDEDEDEDEDEEDYDDGSVASSDASESEAISQHLRNARGKGDD KDNLLSSGRLAAVASSLSLEAFGGDMRALRRARLELKKVEIATLCEAMLE HPETGLLTRSGNGGGGGKGSRMAALLSLLEDDDVKVQALAMASLLAVFRD LAPAYRIRLPTEKELQVKASKEVKQTREYERTFLSSYQAYLKHLEKASKK QTIASGKKTAAQGNLSTPNNVIDVSSSVAAKCLCELLTALAHFNFTTNVL TAVIRLGLGPDAATRVRAGQAVRRLLERDQQGDVSLTATKLVCREVQNRR LHAPDDMVRALQALKLRVKEDEAEEVLRKAKMEVKKKKSKHSKETAEEAE EEGRGDIMAGLKEAEARADPALRARCQAESLQEVTLLYFRVLKQAKKPTL LPAALEGLSRVAHLINLDTVIDVLDVLKDLLDPSRHLPLEASLHAVLTAL RTLQGPGRELKVDDKAFLTFLYQQLGRMGMDGAVSGISSGGSASSNSNRA AVFPLLITCLRSALLARREFSLARVAAFYKRLTGLALQLNSPNEARVVLG LIKELPTRYPGLEQLLDGEADRVAMGVYQPEALEPEMSNPLASGAWELSL LKSHHYHHAVRKAGAAAVVAAQAAGAAHQTATPWSSSSFRIRSHFTNTHK YGEVNMEEDWDFLKHGFGGMFSHMPRFNPLHGMVRRAERERRGQRVKLYF VQKFSNPEVMEGGVNVHKARLLQGTVAGRKEGKEGEEGGEVSFRTFFRET RSHTRKLFLCRKLQRSRALLKRYELHRAVGAGAGKK* back to topmRNA from alignment at scaffold_2:1060517..1063559- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1033 ID=mRNA_1033|Name=jgi.p|Nanoce1779_2|575081|organism=Nannochloropsis oceanica|type=mRNA|length=3043bp|location=Sequence derived from alignment at scaffold_2:1060517..1063559- (Nannochloropsis oceanica) ACAGGTTCAACATGAAAAATCGGAGGACCACACAAAAGCCAGGTGCGCTT
GCAAAAAGAGACAGCGTCCCAGCAGCCAAGCGCAAGGGGACAGGAGGCAA
GCCAATGCGCCATCCCTCTCGCGCCGCCGCAACTAAAAGGCCCACACCCG
AGCATAACCCTCCGGTAGAGGAAGAAGAAGAGGGCCAAGAAGTCGATGAG
GAGGACCGCGTCTTTGTCGAGGAGCACTCAGCCTTTGCAGCCAGCTTGTT
ATCATTGTCTTCCGAGGGTTCCCATGAAAAACACAAGGGAAAGAAGAAGG
ACTCTATGCCTGCCCCACCCAAGCCCCCTGCCCCCATGAGTGCCAAGAAA
AACAACCAAAACTCTCATCTTAAAGACGAGGATGACAAAGTTGGTAAGGG
ATTCTTTATTGAGACTAAGACTATGCGACGTAATGCCTCTACGGAAGGAT
GGGACACGGCACGGGGGAAGGGAAACAAGGTGATTAAGGAGCGGTTGCCT
ACCAAGACCATTGACGGTGCCATTCATTTTTGCACCGAGGAGGTGGAAGA
AAAGGAGGAAAAAGACATTGTAGTAGCGGAAATGGAAGTCGTTGGCCCTA
AGCAAGGGGAGCCACAGCCCGAAGATAAGGAGGACGACGAGGATGAGGAT
GAGGATGAGGACGAAGAGGATTATGACGACGGCAGCGTGGCCAGTTCGGA
CGCTTCGGAAAGCGAAGCCATCAGTCAACATCTGCGCAATGCCAGGGGTA
AGGGCGATGATAAAGACAATCTGTTGTCGTCGGGACGGTTGGCGGCGGTG
GCGAGTAGCCTGTCCTTGGAGGCGTTTGGGGGGGACATGCGAGCGTTGCG
ACGGGCACGGTTGGAATTGAAGAAAGTGGAGATTGCGACGCTATGCGAAG
CGATGCTGGAGCATCCGGAGACAGGTTTGTTGACTCGGTCGGGTAATGGG
GGTGGAGGGGGAAAGGGGAGTAGGATGGCGGCGTTGCTTAGTTTATTGGA
AGATGATGATGTCAAGGTGCAGGCATTAGCGATGGCGAGTTTGCTAGCTG
TCTTTCGCGATCTAGCGCCAGCGTATCGGATCCGACTGCCAACGGAGAAG
GAATTGCAAGTCAAGGCATCGAAGGAGGTGAAGCAAACGAGGGAGTACGA
GCGCACATTCTTGTCGAGTTATCAAGCGTATCTGAAGCATTTGGAGAAGG
CGAGCAAGAAGCAAACGATTGCGTCCGGCAAAAAGACCGCCGCACAAGGG
AACTTGAGCACTCCAAACAACGTAATCGATGTGAGTAGCAGCGTGGCGGC
CAAGTGTCTATGCGAGCTGCTGACGGCGTTGGCGCATTTTAATTTTACGA
CCAATGTGCTTACCGCTGTGATACGCCTGGGGCTGGGCCCCGATGCCGCC
ACAAGAGTAAGGGCTGGCCAGGCGGTTCGACGGCTGTTGGAGAGAGATCA
GCAGGGGGATGTCTCTCTGACGGCGACAAAGCTAGTATGTAGGGAGGTGC
AGAATCGGCGATTGCATGCACCGGACGATATGGTAAGGGCCCTGCAGGCG
TTGAAGTTGCGGGTGAAAGAGGACGAGGCGGAGGAGGTCTTGCGCAAGGC
CAAAATGGAGGTTAAAAAAAAGAAGAGCAAGCATAGCAAAGAGACGGCGG
AGGAGGCGGAGGAGGAGGGACGGGGGGATATAATGGCTGGGTTGAAAGAG
GCGGAGGCGAGAGCAGACCCCGCGCTGAGAGCAAGGTGTCAGGCGGAGAG
CTTGCAGGAGGTGACCTTGTTGTATTTCCGTGTATTAAAGCAAGCAAAGA
AGCCCACATTGTTGCCCGCGGCTTTGGAGGGATTGAGTCGCGTGGCGCAT
TTGATCAATTTGGATACAGTAATTGATGTGTTGGATGTGTTGAAGGATTT
ACTGGACCCCTCGAGGCACTTGCCGTTAGAAGCGAGTTTGCATGCTGTGC
TGACGGCCTTGAGAACGTTGCAGGGCCCGGGACGAGAGCTCAAGGTGGAC
GACAAGGCTTTTTTGACGTTTTTATATCAGCAATTGGGGAGGATGGGGAT
GGATGGTGCAGTCAGTGGCATCAGCAGTGGCGGCAGTGCCAGCAGCAACA
GTAACCGGGCTGCCGTTTTCCCCCTGCTCATCACTTGCCTCCGCAGCGCT
CTGCTTGCGCGTCGTGAATTCTCCTTGGCGCGCGTTGCTGCCTTTTACAA
GCGCCTGACGGGACTCGCCCTTCAACTAAACTCGCCAAACGAGGCTCGAG
TTGTGCTCGGACTGATCAAAGAGCTCCCCACACGTTACCCCGGCCTTGAA
CAATTGTTGGACGGAGAAGCCGACCGAGTCGCCATGGGGGTATACCAACC
CGAGGCTCTAGAGCCCGAAATGAGCAACCCCCTTGCAAGTGGCGCCTGGG
AATTATCCTTGCTCAAGAGTCATCATTACCACCACGCGGTCAGAAAGGCA
GGAGCTGCAGCAGTAGTAGCAGCCCAAGCAGCAGGGGCCGCACATCAGAC
GGCGACCCCGTGGTCCTCCTCTTCCTTTCGGATACGGAGTCATTTTACGA
ATACGCATAAATATGGGGAGGTGAATATGGAGGAGGATTGGGATTTCCTG
AAGCATGGCTTTGGAGGAATGTTTTCTCATATGCCGCGTTTCAATCCATT
GCATGGCATGGTGCGACGGGCGGAGAGGGAGAGGAGGGGACAGCGGGTGA
AATTGTATTTCGTCCAGAAGTTTTCAAATCCGGAGGTAATGGAGGGGGGT
GTGAATGTGCACAAGGCGCGCCTTTTGCAGGGGACGGTGGCGGGGAGGAA
GGAAGGTAAGGAGGGAGAGGAGGGAGGGGAGGTGTCGTTTAGGACATTTT
TCCGGGAGACGAGGTCGCATACCAGAAAGTTATTTTTGTGCCGGAAATTG
CAGCGTTCTCGAGCTTTGCTCAAGAGGTACGAGTTGCATCGCGCTGTTGG
AGCTGGTGCTGGCAAGAAATAAGGAAGAGCGTGAAAGTAAAAGTAGCTAA
TGGATTACAATCGACGAAAGAAAAAGTACTGACCAAATAGGTG back to topCoding sequence (CDS) from alignment at scaffold_2:1060517..1063559- >mRNA_1033 ID=mRNA_1033|Name=jgi.p|Nanoce1779_2|575081|organism=Nannochloropsis oceanica|type=CDS|length=2961bp|location=Sequence derived from alignment at scaffold_2:1060517..1063559- (Nannochloropsis oceanica) ATGAAAAATCGGAGGACCACACAAAAGCCAGGTGCGCTTGCAAAAAGAGA CAGCGTCCCAGCAGCCAAGCGCAAGGGGACAGGAGGCAAGCCAATGCGCC ATCCCTCTCGCGCCGCCGCAACTAAAAGGCCCACACCCGAGCATAACCCT CCGGTAGAGGAAGAAGAAGAGGGCCAAGAAGTCGATGAGGAGGACCGCGT CTTTGTCGAGGAGCACTCAGCCTTTGCAGCCAGCTTGTTATCATTGTCTT CCGAGGGTTCCCATGAAAAACACAAGGGAAAGAAGAAGGACTCTATGCCT GCCCCACCCAAGCCCCCTGCCCCCATGAGTGCCAAGAAAAACAACCAAAA CTCTCATCTTAAAGACGAGGATGACAAAGTTGGTAAGGGATTCTTTATTG AGACTAAGACTATGCGACGTAATGCCTCTACGGAAGGATGGGACACGGCA CGGGGGAAGGGAAACAAGGTGATTAAGGAGCGGTTGCCTACCAAGACCAT TGACGGTGCCATTCATTTTTGCACCGAGGAGGTGGAAGAAAAGGAGGAAA AAGACATTGTAGTAGCGGAAATGGAAGTCGTTGGCCCTAAGCAAGGGGAG CCACAGCCCGAAGATAAGGAGGACGACGAGGATGAGGATGAGGATGAGGA CGAAGAGGATTATGACGACGGCAGCGTGGCCAGTTCGGACGCTTCGGAAA GCGAAGCCATCAGTCAACATCTGCGCAATGCCAGGGGTAAGGGCGATGAT AAAGACAATCTGTTGTCGTCGGGACGGTTGGCGGCGGTGGCGAGTAGCCT GTCCTTGGAGGCGTTTGGGGGGGACATGCGAGCGTTGCGACGGGCACGGT TGGAATTGAAGAAAGTGGAGATTGCGACGCTATGCGAAGCGATGCTGGAG CATCCGGAGACAGGTTTGTTGACTCGGTCGGGTAATGGGGGTGGAGGGGG AAAGGGGAGTAGGATGGCGGCGTTGCTTAGTTTATTGGAAGATGATGATG TCAAGGTGCAGGCATTAGCGATGGCGAGTTTGCTAGCTGTCTTTCGCGAT CTAGCGCCAGCGTATCGGATCCGACTGCCAACGGAGAAGGAATTGCAAGT CAAGGCATCGAAGGAGGTGAAGCAAACGAGGGAGTACGAGCGCACATTCT TGTCGAGTTATCAAGCGTATCTGAAGCATTTGGAGAAGGCGAGCAAGAAG CAAACGATTGCGTCCGGCAAAAAGACCGCCGCACAAGGGAACTTGAGCAC TCCAAACAACGTAATCGATGTGAGTAGCAGCGTGGCGGCCAAGTGTCTAT GCGAGCTGCTGACGGCGTTGGCGCATTTTAATTTTACGACCAATGTGCTT ACCGCTGTGATACGCCTGGGGCTGGGCCCCGATGCCGCCACAAGAGTAAG GGCTGGCCAGGCGGTTCGACGGCTGTTGGAGAGAGATCAGCAGGGGGATG TCTCTCTGACGGCGACAAAGCTAGTATGTAGGGAGGTGCAGAATCGGCGA TTGCATGCACCGGACGATATGGTAAGGGCCCTGCAGGCGTTGAAGTTGCG GGTGAAAGAGGACGAGGCGGAGGAGGTCTTGCGCAAGGCCAAAATGGAGG TTAAAAAAAAGAAGAGCAAGCATAGCAAAGAGACGGCGGAGGAGGCGGAG GAGGAGGGACGGGGGGATATAATGGCTGGGTTGAAAGAGGCGGAGGCGAG AGCAGACCCCGCGCTGAGAGCAAGGTGTCAGGCGGAGAGCTTGCAGGAGG TGACCTTGTTGTATTTCCGTGTATTAAAGCAAGCAAAGAAGCCCACATTG TTGCCCGCGGCTTTGGAGGGATTGAGTCGCGTGGCGCATTTGATCAATTT GGATACAGTAATTGATGTGTTGGATGTGTTGAAGGATTTACTGGACCCCT CGAGGCACTTGCCGTTAGAAGCGAGTTTGCATGCTGTGCTGACGGCCTTG AGAACGTTGCAGGGCCCGGGACGAGAGCTCAAGGTGGACGACAAGGCTTT TTTGACGTTTTTATATCAGCAATTGGGGAGGATGGGGATGGATGGTGCAG TCAGTGGCATCAGCAGTGGCGGCAGTGCCAGCAGCAACAGTAACCGGGCT GCCGTTTTCCCCCTGCTCATCACTTGCCTCCGCAGCGCTCTGCTTGCGCG TCGTGAATTCTCCTTGGCGCGCGTTGCTGCCTTTTACAAGCGCCTGACGG GACTCGCCCTTCAACTAAACTCGCCAAACGAGGCTCGAGTTGTGCTCGGA CTGATCAAAGAGCTCCCCACACGTTACCCCGGCCTTGAACAATTGTTGGA CGGAGAAGCCGACCGAGTCGCCATGGGGGTATACCAACCCGAGGCTCTAG AGCCCGAAATGAGCAACCCCCTTGCAAGTGGCGCCTGGGAATTATCCTTG CTCAAGAGTCATCATTACCACCACGCGGTCAGAAAGGCAGGAGCTGCAGC AGTAGTAGCAGCCCAAGCAGCAGGGGCCGCACATCAGACGGCGACCCCGT GGTCCTCCTCTTCCTTTCGGATACGGAGTCATTTTACGAATACGCATAAA TATGGGGAGGTGAATATGGAGGAGGATTGGGATTTCCTGAAGCATGGCTT TGGAGGAATGTTTTCTCATATGCCGCGTTTCAATCCATTGCATGGCATGG TGCGACGGGCGGAGAGGGAGAGGAGGGGACAGCGGGTGAAATTGTATTTC GTCCAGAAGTTTTCAAATCCGGAGGTAATGGAGGGGGGTGTGAATGTGCA CAAGGCGCGCCTTTTGCAGGGGACGGTGGCGGGGAGGAAGGAAGGTAAGG AGGGAGAGGAGGGAGGGGAGGTGTCGTTTAGGACATTTTTCCGGGAGACG AGGTCGCATACCAGAAAGTTATTTTTGTGCCGGAAATTGCAGCGTTCTCG AGCTTTGCTCAAGAGGTACGAGTTGCATCGCGCTGTTGGAGCTGGTGCTG GCAAGAAATAA back to top
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